Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0264 and Shewana3_0265 are separated by 113 nucleotides Shewana3_0265 and Shewana3_0266 are separated by 299 nucleotides
Shewana3_0264: Shewana3_0264 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 295,103 to 297,058
_0264
Shewana3_0265: Shewana3_0265 - hypothetical protein (RefSeq), at 297,172 to 299,271
_0265
Shewana3_0266: Shewana3_0266 - 2OG-Fe(II) oxygenase (RefSeq), at 299,571 to 300,554
_0266
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 296.248 kb on + strand, within Shewana3_0264 at 296.364 kb on - strand, within Shewana3_0264 at 296.367 kb on + strand, within Shewana3_0264 at 296.418 kb on + strand, within Shewana3_0264 at 296.688 kb on + strand, within Shewana3_0264 at 296.730 kb on + strand, within Shewana3_0264 at 296.769 kb on - strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.788 kb on + strand, within Shewana3_0264 at 296.857 kb on + strand, within Shewana3_0264 at 296.858 kb on + strand, within Shewana3_0264 at 296.924 kb on + strand at 296.924 kb on + strand at 297.013 kb on - strand at 297.052 kb on + strand at 297.369 kb on - strand at 297.380 kb on + strand at 297.380 kb on + strand at 297.388 kb on - strand, within Shewana3_0265 at 297.388 kb on - strand, within Shewana3_0265 at 297.453 kb on - strand, within Shewana3_0265 at 297.482 kb on + strand, within Shewana3_0265 at 297.482 kb on - strand, within Shewana3_0265 at 297.511 kb on - strand, within Shewana3_0265 at 297.628 kb on + strand, within Shewana3_0265 at 297.637 kb on - strand, within Shewana3_0265 at 297.659 kb on + strand, within Shewana3_0265 at 297.723 kb on - strand, within Shewana3_0265 at 297.726 kb on + strand, within Shewana3_0265 at 297.774 kb on - strand, within Shewana3_0265 at 297.847 kb on - strand, within Shewana3_0265 at 297.901 kb on - strand, within Shewana3_0265 at 297.903 kb on + strand, within Shewana3_0265 at 297.911 kb on - strand, within Shewana3_0265 at 297.921 kb on + strand, within Shewana3_0265 at 298.045 kb on - strand, within Shewana3_0265 at 298.308 kb on + strand, within Shewana3_0265 at 298.358 kb on + strand, within Shewana3_0265 at 298.489 kb on + strand, within Shewana3_0265 at 298.584 kb on - strand, within Shewana3_0265 at 298.801 kb on - strand, within Shewana3_0265 at 298.933 kb on - strand, within Shewana3_0265 at 298.967 kb on - strand, within Shewana3_0265 at 299.008 kb on + strand, within Shewana3_0265 at 299.126 kb on + strand at 299.134 kb on - strand at 299.188 kb on + strand at 299.191 kb on - strand at 299.221 kb on + strand at 299.296 kb on - strand at 299.530 kb on - strand at 299.856 kb on - strand, within Shewana3_0266 at 299.883 kb on - strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.040 kb on + strand, within Shewana3_0266 at 300.057 kb on + strand, within Shewana3_0266 at 300.081 kb on + strand, within Shewana3_0266 at 300.135 kb on + strand, within Shewana3_0266 at 300.148 kb on - strand, within Shewana3_0266 at 300.223 kb on - strand, within Shewana3_0266
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 296,248 + Shewana3_0264 0.59 -0.1 296,364 - Shewana3_0264 0.64 -0.6 296,367 + Shewana3_0264 0.65 -0.4 296,418 + Shewana3_0264 0.67 -1.7 296,688 + Shewana3_0264 0.81 -0.7 296,730 + Shewana3_0264 0.83 +0.2 296,769 - Shewana3_0264 0.85 -1.1 296,788 + Shewana3_0264 0.86 -0.3 296,788 + Shewana3_0264 0.86 -0.2 296,857 + Shewana3_0264 0.90 +0.0 296,858 + Shewana3_0264 0.90 +0.1 296,924 + +0.3 296,924 + -0.2 297,013 - -0.9 297,052 + -1.4 297,369 - +0.0 297,380 + -0.3 297,380 + +0.1 297,388 - Shewana3_0265 0.10 +0.2 297,388 - Shewana3_0265 0.10 +0.6 297,453 - Shewana3_0265 0.13 -0.1 297,482 + Shewana3_0265 0.15 +0.1 297,482 - Shewana3_0265 0.15 -1.3 297,511 - Shewana3_0265 0.16 -0.5 297,628 + Shewana3_0265 0.22 -0.3 297,637 - Shewana3_0265 0.22 -2.5 297,659 + Shewana3_0265 0.23 -0.3 297,723 - Shewana3_0265 0.26 +0.2 297,726 + Shewana3_0265 0.26 -0.0 297,774 - Shewana3_0265 0.29 -0.3 297,847 - Shewana3_0265 0.32 -2.0 297,901 - Shewana3_0265 0.35 -1.3 297,903 + Shewana3_0265 0.35 +0.2 297,911 - Shewana3_0265 0.35 +0.0 297,921 + Shewana3_0265 0.36 +0.2 298,045 - Shewana3_0265 0.42 -0.6 298,308 + Shewana3_0265 0.54 +0.0 298,358 + Shewana3_0265 0.56 -0.8 298,489 + Shewana3_0265 0.63 +0.1 298,584 - Shewana3_0265 0.67 -0.6 298,801 - Shewana3_0265 0.78 +0.3 298,933 - Shewana3_0265 0.84 -1.7 298,967 - Shewana3_0265 0.85 -0.1 299,008 + Shewana3_0265 0.87 +0.3 299,126 + -0.2 299,134 - +0.2 299,188 + -0.4 299,191 - +0.1 299,221 + +0.2 299,296 - -0.6 299,530 - +0.5 299,856 - Shewana3_0266 0.29 -2.0 299,883 - Shewana3_0266 0.32 +0.0 300,040 + Shewana3_0266 0.48 -1.1 300,040 + Shewana3_0266 0.48 +0.2 300,057 + Shewana3_0266 0.49 +0.8 300,081 + Shewana3_0266 0.52 +0.3 300,135 + Shewana3_0266 0.57 -0.5 300,148 - Shewana3_0266 0.59 -0.1 300,223 - Shewana3_0266 0.66 -0.5
Or see this region's nucleotide sequence