Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4254 and Shewana3_4255 are separated by 423 nucleotides Shewana3_4255 and Shewana3_4256 are separated by 9 nucleotides Shewana3_4256 and Shewana3_4257 are separated by 0 nucleotides Shewana3_4257 and Shewana3_4258 are separated by 3 nucleotides
Shewana3_4254: Shewana3_4254 - phage integrase family protein (RefSeq), at 131,864 to 133,129
_4254
Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855
_4255
Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134
_4256
Shewana3_4257: Shewana3_4257 - hypothetical protein (RefSeq), at 134,135 to 134,677
_4257
Shewana3_4258: Shewana3_4258 - TraB pilus assembly family protein (RefSeq), at 134,681 to 136,039
_4258
Position (kb) 133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 132.898 kb on + strand, within Shewana3_4254 at 132.909 kb on + strand, within Shewana3_4254 at 132.917 kb on - strand, within Shewana3_4254 at 132.997 kb on - strand, within Shewana3_4254 at 133.282 kb on + strand at 133.655 kb on - strand, within Shewana3_4255 at 133.858 kb on - strand at 133.873 kb on + strand at 133.921 kb on + strand, within Shewana3_4256 at 134.038 kb on - strand, within Shewana3_4256 at 134.275 kb on + strand, within Shewana3_4257 at 134.283 kb on - strand, within Shewana3_4257 at 134.345 kb on + strand, within Shewana3_4257 at 134.371 kb on + strand, within Shewana3_4257 at 134.379 kb on - strand, within Shewana3_4257 at 134.440 kb on - strand, within Shewana3_4257 at 134.540 kb on + strand, within Shewana3_4257 at 134.577 kb on + strand, within Shewana3_4257 at 134.814 kb on + strand at 134.916 kb on - strand, within Shewana3_4258 at 134.923 kb on - strand, within Shewana3_4258 at 135.011 kb on + strand, within Shewana3_4258 at 135.017 kb on + strand, within Shewana3_4258 at 135.111 kb on - strand, within Shewana3_4258
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 132,898 + Shewana3_4254 0.82 -0.2 132,909 + Shewana3_4254 0.83 -0.4 132,917 - Shewana3_4254 0.83 -0.1 132,997 - Shewana3_4254 0.89 -1.0 133,282 + -3.2 133,655 - Shewana3_4255 0.34 +0.2 133,858 - +0.3 133,873 + -0.7 133,921 + Shewana3_4256 0.21 -2.2 134,038 - Shewana3_4256 0.64 -0.4 134,275 + Shewana3_4257 0.26 -0.5 134,283 - Shewana3_4257 0.27 +0.1 134,345 + Shewana3_4257 0.39 -0.6 134,371 + Shewana3_4257 0.43 -0.3 134,379 - Shewana3_4257 0.45 +0.4 134,440 - Shewana3_4257 0.56 +0.6 134,540 + Shewana3_4257 0.75 +0.1 134,577 + Shewana3_4257 0.81 -0.5 134,814 + +1.2 134,916 - Shewana3_4258 0.17 +0.4 134,923 - Shewana3_4258 0.18 -1.5 135,011 + Shewana3_4258 0.24 -0.4 135,017 + Shewana3_4258 0.25 -0.8 135,111 - Shewana3_4258 0.32 +0.5
Or see this region's nucleotide sequence