Strain Fitness in Shewanella loihica PV-4 around Shew_1978
Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Chloramphenicol 5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,287,343 | - | Shew_1977 | 0.40 | -0.5 | |
2,287,474 | + | Shew_1977 | 0.54 | +0.1 | |
2,287,509 | - | Shew_1977 | 0.58 | -0.1 | |
2,287,656 | + | Shew_1977 | 0.74 | -0.1 | |
2,287,721 | + | Shew_1977 | 0.81 | +1.0 | |
2,287,795 | + | Shew_1977 | 0.89 | -0.8 | |
2,287,930 | + | -0.4 | |||
2,287,950 | + | +0.7 | |||
2,287,964 | - | -0.2 | |||
2,288,100 | - | +0.6 | |||
2,288,227 | + | +1.2 | |||
2,288,314 | + | -1.4 | |||
2,288,322 | - | +0.1 | |||
2,288,322 | - | -0.3 | |||
2,288,836 | + | Shew_1978 | 0.56 | -0.8 | |
2,289,490 | + | Shew_1979 | 0.19 | +0.4 | |
2,289,912 | + | Shew_1979 | 0.64 | -0.2 |
Or see this region's nucleotide sequence