Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1681 and Shew_1682 are separated by 42 nucleotides Shew_1682 and Shew_1683 are separated by 30 nucleotides Shew_1683 and Shew_1684 are separated by 31 nucleotides Shew_1684 and Shew_1685 are separated by 347 nucleotides
Shew_1681: Shew_1681 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 1,931,402 to 1,932,892
_1681
Shew_1682: Shew_1682 - ribonuclease H (RefSeq), at 1,932,935 to 1,933,699
_1682
Shew_1683: Shew_1683 - hypothetical protein (RefSeq), at 1,933,730 to 1,934,305
_1683
Shew_1684: Shew_1684 - lysine exporter protein LysE/YggA (RefSeq), at 1,934,337 to 1,934,933
_1684
Shew_1685: Shew_1685 - collagenase (RefSeq), at 1,935,281 to 1,938,187
_1685
Position (kb) 1933
1934
1935 Strain fitness (log2 ratio) -1
0
1 at 1933.016 kb on + strand, within Shew_1682 at 1933.258 kb on + strand, within Shew_1682 at 1933.929 kb on - strand, within Shew_1683 at 1934.472 kb on + strand, within Shew_1684 at 1934.480 kb on - strand, within Shew_1684 at 1934.480 kb on - strand, within Shew_1684 at 1934.693 kb on + strand, within Shew_1684 at 1934.759 kb on + strand, within Shew_1684
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 1,933,016 + Shew_1682 0.11 -0.2 1,933,258 + Shew_1682 0.42 -0.1 1,933,929 - Shew_1683 0.35 +0.8 1,934,472 + Shew_1684 0.23 -0.9 1,934,480 - Shew_1684 0.24 +0.7 1,934,480 - Shew_1684 0.24 +0.1 1,934,693 + Shew_1684 0.60 +0.4 1,934,759 + Shew_1684 0.71 +0.1
Or see this region's nucleotide sequence