Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0861 and Shew_0862 are separated by 157 nucleotides Shew_0862 and Shew_0863 are separated by 1 nucleotides
Shew_0861: Shew_0861 - extracellular solute-binding protein (RefSeq), at 981,749 to 982,756
_0861
Shew_0862: Shew_0862 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 982,914 to 984,545
_0862
Shew_0863: Shew_0863 - ABC transporter-related protein (RefSeq), at 984,547 to 985,575
_0863
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -1
0
1
2
3 at 981.925 kb on - strand, within Shew_0861 at 982.047 kb on + strand, within Shew_0861 at 982.060 kb on - strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.435 kb on + strand, within Shew_0861 at 982.443 kb on - strand, within Shew_0861 at 982.674 kb on - strand at 983.106 kb on - strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862 at 983.860 kb on + strand, within Shew_0862 at 984.130 kb on + strand, within Shew_0862 at 984.223 kb on + strand, within Shew_0862 at 984.560 kb on + strand at 984.608 kb on + strand at 984.616 kb on - strand at 984.902 kb on - strand, within Shew_0863 at 984.951 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.170 kb on + strand, within Shew_0863 at 985.192 kb on + strand, within Shew_0863 at 985.212 kb on + strand, within Shew_0863 at 985.282 kb on - strand, within Shew_0863 at 985.321 kb on + strand, within Shew_0863 at 985.421 kb on - strand, within Shew_0863 at 985.424 kb on + strand, within Shew_0863 at 985.430 kb on - strand, within Shew_0863
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 981,925 - Shew_0861 0.17 -0.1 982,047 + Shew_0861 0.30 +0.3 982,060 - Shew_0861 0.31 -0.9 982,131 + Shew_0861 0.38 -0.1 982,131 + Shew_0861 0.38 +0.1 982,435 + Shew_0861 0.68 -0.1 982,443 - Shew_0861 0.69 +0.5 982,674 - -0.7 983,106 - Shew_0862 0.12 -1.6 983,431 + Shew_0862 0.32 -0.8 983,431 + Shew_0862 0.32 -0.6 983,860 + Shew_0862 0.58 -0.4 984,130 + Shew_0862 0.75 +0.7 984,223 + Shew_0862 0.80 -0.0 984,560 + +1.8 984,608 + +0.6 984,616 - -1.4 984,902 - Shew_0863 0.34 -0.6 984,951 - Shew_0863 0.39 -1.0 985,096 - Shew_0863 0.53 -0.6 985,096 - Shew_0863 0.53 -1.1 985,170 + Shew_0863 0.61 +0.7 985,192 + Shew_0863 0.63 +1.0 985,212 + Shew_0863 0.65 +0.8 985,282 - Shew_0863 0.71 -0.3 985,321 + Shew_0863 0.75 +1.5 985,421 - Shew_0863 0.85 -0.0 985,424 + Shew_0863 0.85 +3.4 985,430 - Shew_0863 0.86 -0.7
Or see this region's nucleotide sequence