Strain Fitness in Shewanella loihica PV-4 around Shew_0602

Experiment: Chloramphenicol 5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0601 and Shew_0602 are separated by 835 nucleotidesShew_0602 and Shew_0603 are separated by 24 nucleotidesShew_0603 and Shew_0604 are separated by 173 nucleotides Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669 _0601 Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158 _0602 Shew_0603: Shew_0603 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 682,183 to 682,602 _0603 Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251 _0604 Position (kb) 681 682 683Strain fitness (log2 ratio) -1 0 1at 680.532 kb on + strand, within Shew_0601at 680.538 kb on + strand, within Shew_0601at 680.546 kb on - strand, within Shew_0601at 680.561 kb on + strand, within Shew_0601at 680.574 kb on - strand, within Shew_0601at 680.660 kb on - strandat 680.706 kb on - strandat 680.725 kb on + strandat 680.733 kb on - strandat 680.733 kb on + strandat 680.733 kb on - strandat 680.733 kb on - strandat 680.992 kb on - strandat 681.145 kb on + strandat 681.153 kb on - strandat 681.153 kb on - strandat 681.153 kb on - strandat 681.153 kb on - strandat 681.156 kb on + strandat 681.166 kb on - strandat 681.225 kb on + strandat 681.288 kb on + strandat 681.293 kb on + strandat 681.695 kb on - strand, within Shew_0602at 681.793 kb on + strand, within Shew_0602at 681.950 kb on - strand, within Shew_0602at 681.999 kb on - strand, within Shew_0602at 682.135 kb on - strandat 682.140 kb on - strandat 682.229 kb on + strand, within Shew_0603at 682.309 kb on + strand, within Shew_0603at 682.318 kb on + strand, within Shew_0603at 682.813 kb on - strandat 682.938 kb on + strand, within Shew_0604at 682.946 kb on - strand, within Shew_0604at 682.990 kb on - strand, within Shew_0604at 683.068 kb on + strand, within Shew_0604at 683.107 kb on - strand, within Shew_0604

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml
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680,532 + Shew_0601 0.64 +0.2
680,538 + Shew_0601 0.66 -0.5
680,546 - Shew_0601 0.68 +0.1
680,561 + Shew_0601 0.72 -0.7
680,574 - Shew_0601 0.75 +0.9
680,660 - -0.0
680,706 - +0.0
680,725 + +0.8
680,733 - +0.1
680,733 + +0.2
680,733 - +0.2
680,733 - +0.2
680,992 - +0.0
681,145 + +0.3
681,153 - +1.1
681,153 - +1.0
681,153 - +0.2
681,153 - +0.5
681,156 + +0.4
681,166 - +0.7
681,225 + +0.3
681,288 + -0.3
681,293 + -0.1
681,695 - Shew_0602 0.29 -0.3
681,793 + Shew_0602 0.44 -1.6
681,950 - Shew_0602 0.68 -0.1
681,999 - Shew_0602 0.76 +0.0
682,135 - +0.1
682,140 - -0.5
682,229 + Shew_0603 0.11 +0.4
682,309 + Shew_0603 0.30 -0.2
682,318 + Shew_0603 0.32 -0.0
682,813 - +0.2
682,938 + Shew_0604 0.11 -0.7
682,946 - Shew_0604 0.12 +0.2
682,990 - Shew_0604 0.14 +0.5
683,068 + Shew_0604 0.20 +0.3
683,107 - Shew_0604 0.22 +0.7

Or see this region's nucleotide sequence