Strain Fitness in Shewanella loihica PV-4 around Shew_0570

Experiment: Chloramphenicol 5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0569 and Shew_0570 are separated by 334 nucleotidesShew_0570 and Shew_0571 overlap by 1 nucleotides Shew_0569: Shew_0569 - HflC protein (RefSeq), at 644,958 to 645,836 _0569 Shew_0570: Shew_0570 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 646,171 to 646,761 _0570 Shew_0571: Shew_0571 - cytochrome b/b6 domain-containing protein (RefSeq), at 646,761 to 647,975 _0571 Position (kb) 646 647Strain fitness (log2 ratio) -1 0 1at 645.527 kb on + strand, within Shew_0569at 645.680 kb on + strand, within Shew_0569at 645.766 kb on + strandat 645.766 kb on + strandat 645.766 kb on + strandat 645.772 kb on + strandat 646.601 kb on - strand, within Shew_0570at 646.783 kb on + strandat 647.008 kb on - strand, within Shew_0571at 647.259 kb on - strand, within Shew_0571

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml
remove
645,527 + Shew_0569 0.65 -0.2
645,680 + Shew_0569 0.82 -0.1
645,766 + -0.1
645,766 + -0.4
645,766 + -0.8
645,772 + -0.2
646,601 - Shew_0570 0.73 -0.8
646,783 + +0.4
647,008 - Shew_0571 0.20 -0.2
647,259 - Shew_0571 0.41 -0.3

Or see this region's nucleotide sequence