Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0532 and Shew_0533 are separated by 132 nucleotides Shew_0533 and Shew_0534 are separated by 202 nucleotides
Shew_0532: Shew_0532 - peptidase M28 (RefSeq), at 602,600 to 603,628
_0532
Shew_0533: Shew_0533 - excinuclease ABC, A subunit (RefSeq), at 603,761 to 606,586
_0533
Shew_0534: Shew_0534 - major facilitator transporter (RefSeq), at 606,789 to 608,156
_0534
Position (kb) 603
604
605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.879 kb on - strand, within Shew_0532 at 602.879 kb on - strand, within Shew_0532 at 602.982 kb on + strand, within Shew_0532 at 602.982 kb on + strand, within Shew_0532 at 602.990 kb on - strand, within Shew_0532 at 602.990 kb on - strand, within Shew_0532 at 603.018 kb on + strand, within Shew_0532 at 603.112 kb on - strand, within Shew_0532 at 603.523 kb on + strand, within Shew_0532 at 603.528 kb on + strand at 603.528 kb on + strand at 603.711 kb on - strand at 604.062 kb on + strand, within Shew_0533 at 604.080 kb on - strand, within Shew_0533 at 604.462 kb on + strand, within Shew_0533 at 604.643 kb on - strand, within Shew_0533 at 604.643 kb on - strand, within Shew_0533 at 604.725 kb on - strand, within Shew_0533 at 604.817 kb on + strand, within Shew_0533 at 604.894 kb on + strand, within Shew_0533 at 604.902 kb on - strand, within Shew_0533 at 605.096 kb on + strand, within Shew_0533 at 605.152 kb on + strand, within Shew_0533 at 605.308 kb on + strand, within Shew_0533 at 605.308 kb on + strand, within Shew_0533 at 605.415 kb on + strand, within Shew_0533 at 605.444 kb on + strand, within Shew_0533 at 605.543 kb on + strand, within Shew_0533 at 605.543 kb on + strand, within Shew_0533 at 605.609 kb on - strand, within Shew_0533 at 605.738 kb on + strand, within Shew_0533 at 605.962 kb on + strand, within Shew_0533 at 606.076 kb on - strand, within Shew_0533 at 606.094 kb on - strand, within Shew_0533 at 606.370 kb on + strand at 606.442 kb on - strand at 606.466 kb on - strand at 606.493 kb on + strand at 606.571 kb on + strand at 606.593 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.806 kb on + strand at 606.814 kb on - strand at 606.814 kb on - strand at 607.367 kb on - strand, within Shew_0534
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 602,879 - Shew_0532 0.27 -0.7 602,879 - Shew_0532 0.27 -0.2 602,982 + Shew_0532 0.37 +0.4 602,982 + Shew_0532 0.37 -0.3 602,990 - Shew_0532 0.38 +0.1 602,990 - Shew_0532 0.38 +1.4 603,018 + Shew_0532 0.41 -0.0 603,112 - Shew_0532 0.50 -0.3 603,523 + Shew_0532 0.90 -0.0 603,528 + +0.5 603,528 + +0.0 603,711 - +0.2 604,062 + Shew_0533 0.11 -0.3 604,080 - Shew_0533 0.11 -0.1 604,462 + Shew_0533 0.25 -0.4 604,643 - Shew_0533 0.31 -1.2 604,643 - Shew_0533 0.31 -0.3 604,725 - Shew_0533 0.34 -0.6 604,817 + Shew_0533 0.37 -0.2 604,894 + Shew_0533 0.40 -0.2 604,902 - Shew_0533 0.40 -0.9 605,096 + Shew_0533 0.47 -1.0 605,152 + Shew_0533 0.49 -1.2 605,308 + Shew_0533 0.55 -0.3 605,308 + Shew_0533 0.55 -0.9 605,415 + Shew_0533 0.59 -0.2 605,444 + Shew_0533 0.60 -0.4 605,543 + Shew_0533 0.63 -0.1 605,543 + Shew_0533 0.63 -0.3 605,609 - Shew_0533 0.65 -1.6 605,738 + Shew_0533 0.70 -0.3 605,962 + Shew_0533 0.78 -0.3 606,076 - Shew_0533 0.82 -2.0 606,094 - Shew_0533 0.83 -0.3 606,370 + -2.1 606,442 - -0.2 606,466 - -0.3 606,493 + -1.3 606,571 + +0.1 606,593 + -0.2 606,806 + +0.1 606,806 + -0.2 606,806 + +1.0 606,806 + +1.4 606,806 + +1.8 606,806 + +1.1 606,814 - +0.9 606,814 - +1.6 607,367 - Shew_0534 0.42 +1.6
Or see this region's nucleotide sequence