Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0505 and Shew_0506 are separated by 67 nucleotides Shew_0506 and Shew_0507 are separated by 127 nucleotides
Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503
_0505
Shew_0506: Shew_0506 - LysR family transcriptional regulator (RefSeq), at 564,571 to 565,488
_0506
Shew_0507: Shew_0507 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 565,616 to 566,707
_0507
Position (kb) 564
565
566 Strain fitness (log2 ratio) -1
0
1 at 563.607 kb on + strand, within Shew_0505 at 563.831 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.977 kb on - strand, within Shew_0505 at 563.988 kb on - strand, within Shew_0505 at 564.182 kb on - strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.419 kb on + strand at 564.433 kb on + strand at 564.478 kb on - strand at 564.583 kb on - strand at 564.723 kb on + strand, within Shew_0506 at 564.728 kb on + strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.736 kb on - strand, within Shew_0506 at 564.977 kb on - strand, within Shew_0506 at 565.411 kb on - strand at 565.443 kb on + strand at 565.830 kb on + strand, within Shew_0507 at 565.909 kb on + strand, within Shew_0507 at 565.917 kb on - strand, within Shew_0507 at 566.090 kb on + strand, within Shew_0507 at 566.103 kb on - strand, within Shew_0507 at 566.344 kb on - strand, within Shew_0507
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 563,607 + Shew_0505 0.34 +0.0 563,831 + Shew_0505 0.50 +0.9 563,969 + Shew_0505 0.61 +0.1 563,969 + Shew_0505 0.61 -0.2 563,977 - Shew_0505 0.61 +0.4 563,988 - Shew_0505 0.62 +0.2 564,182 - Shew_0505 0.76 -0.4 564,279 + Shew_0505 0.83 -0.0 564,279 + Shew_0505 0.83 -0.3 564,419 + -0.4 564,433 + -0.5 564,478 - -0.2 564,583 - +0.2 564,723 + Shew_0506 0.17 +0.5 564,728 + Shew_0506 0.17 -0.1 564,731 - Shew_0506 0.17 +0.1 564,731 - Shew_0506 0.17 +0.5 564,736 - Shew_0506 0.18 +0.9 564,977 - Shew_0506 0.44 +0.4 565,411 - +0.0 565,443 + -1.5 565,830 + Shew_0507 0.20 +0.2 565,909 + Shew_0507 0.27 +0.2 565,917 - Shew_0507 0.28 -0.1 566,090 + Shew_0507 0.43 +0.5 566,103 - Shew_0507 0.45 +0.3 566,344 - Shew_0507 0.67 +0.2
Or see this region's nucleotide sequence