Experiment: Chloramphenicol 5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0071 and Shew_0072 are separated by 7 nucleotides Shew_0072 and Shew_0073 are separated by 373 nucleotides
Shew_0071: Shew_0071 - AraC family transcriptional regulator (RefSeq), at 85,050 to 85,916
_0071
Shew_0072: Shew_0072 - hypothetical protein (RefSeq), at 85,924 to 86,445
_0072
Shew_0073: Shew_0073 - coproporphyrinogen III oxidase (RefSeq), at 86,819 to 88,162
_0073
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1 at 84.933 kb on - strand at 85.084 kb on + strand at 85.118 kb on - strand at 85.120 kb on + strand at 85.259 kb on + strand, within Shew_0071 at 85.267 kb on - strand, within Shew_0071 at 85.286 kb on + strand, within Shew_0071 at 85.385 kb on + strand, within Shew_0071 at 85.398 kb on - strand, within Shew_0071 at 85.460 kb on + strand, within Shew_0071 at 85.562 kb on + strand, within Shew_0071 at 85.570 kb on - strand, within Shew_0071 at 85.570 kb on - strand, within Shew_0071 at 85.585 kb on - strand, within Shew_0071 at 85.660 kb on + strand, within Shew_0071 at 85.696 kb on - strand, within Shew_0071 at 85.720 kb on + strand, within Shew_0071 at 85.728 kb on - strand, within Shew_0071 at 85.801 kb on + strand, within Shew_0071 at 85.894 kb on + strand at 86.224 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.231 kb on + strand, within Shew_0072 at 86.234 kb on - strand, within Shew_0072 at 86.239 kb on - strand, within Shew_0072 at 86.292 kb on + strand, within Shew_0072 at 86.389 kb on + strand, within Shew_0072 at 86.676 kb on - strand at 86.823 kb on - strand at 86.869 kb on + strand at 86.882 kb on - strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.929 kb on + strand at 86.937 kb on - strand at 87.033 kb on + strand, within Shew_0073 at 87.041 kb on - strand, within Shew_0073 at 87.296 kb on - strand, within Shew_0073 at 87.296 kb on - strand, within Shew_0073 at 87.302 kb on - strand, within Shew_0073
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 5 mg/ml remove 84,933 - +0.0 85,084 + +0.0 85,118 - +0.6 85,120 + +0.4 85,259 + Shew_0071 0.24 +0.0 85,267 - Shew_0071 0.25 +0.3 85,286 + Shew_0071 0.27 -0.3 85,385 + Shew_0071 0.39 +0.2 85,398 - Shew_0071 0.40 -0.2 85,460 + Shew_0071 0.47 -0.1 85,562 + Shew_0071 0.59 -0.1 85,570 - Shew_0071 0.60 -0.5 85,570 - Shew_0071 0.60 +1.4 85,585 - Shew_0071 0.62 +0.1 85,660 + Shew_0071 0.70 +0.2 85,696 - Shew_0071 0.75 -0.1 85,720 + Shew_0071 0.77 -0.9 85,728 - Shew_0071 0.78 -0.3 85,801 + Shew_0071 0.87 +0.2 85,894 + +0.5 86,224 + Shew_0072 0.57 -0.6 86,231 + Shew_0072 0.59 +0.3 86,231 + Shew_0072 0.59 +0.1 86,231 + Shew_0072 0.59 -0.9 86,231 + Shew_0072 0.59 +0.6 86,231 + Shew_0072 0.59 +0.2 86,234 - Shew_0072 0.59 -0.4 86,239 - Shew_0072 0.60 +0.2 86,292 + Shew_0072 0.70 -0.9 86,389 + Shew_0072 0.89 -0.7 86,676 - +0.1 86,823 - -0.5 86,869 + -0.2 86,882 - -1.3 86,929 + +0.1 86,929 + -0.1 86,929 + -0.0 86,937 - +0.0 87,033 + Shew_0073 0.16 -0.2 87,041 - Shew_0073 0.17 +0.2 87,296 - Shew_0073 0.35 -0.1 87,296 - Shew_0073 0.35 +0.9 87,302 - Shew_0073 0.36 +0.1
Or see this region's nucleotide sequence