Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_687

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_686 and Pf6N2E2_687 are separated by 253 nucleotidesPf6N2E2_687 and Pf6N2E2_688 are separated by 126 nucleotides Pf6N2E2_686 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 792,843 to 793,577 _686 Pf6N2E2_687 - 4-oxalocrotonate tautomerase (EC 5.3.2.-), at 793,831 to 794,037 _687 Pf6N2E2_688 - Transcriptional regulator, LysR family, at 794,164 to 795,087 _688 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1 2at 792.844 kb on + strandat 792.916 kb on + strandat 792.916 kb on + strandat 792.917 kb on - strand, within Pf6N2E2_686at 792.917 kb on - strand, within Pf6N2E2_686at 793.229 kb on - strand, within Pf6N2E2_686at 793.257 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.490 kb on + strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.491 kb on - strand, within Pf6N2E2_686at 793.492 kb on + strand, within Pf6N2E2_686at 793.679 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strandat 793.691 kb on + strandat 793.833 kb on - strandat 793.888 kb on - strand, within Pf6N2E2_687at 793.888 kb on - strand, within Pf6N2E2_687at 793.888 kb on - strand, within Pf6N2E2_687at 794.013 kb on + strand, within Pf6N2E2_687at 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.097 kb on + strandat 794.098 kb on - strandat 794.098 kb on - strandat 794.098 kb on - strandat 794.101 kb on + strandat 794.101 kb on + strandat 794.102 kb on - strandat 794.102 kb on - strandat 794.156 kb on - strandat 794.156 kb on - strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.201 kb on + strandat 794.202 kb on - strandat 794.202 kb on - strandat 794.202 kb on - strandat 794.374 kb on + strand, within Pf6N2E2_688at 794.374 kb on + strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.375 kb on - strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.485 kb on + strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.486 kb on - strand, within Pf6N2E2_688at 794.692 kb on + strand, within Pf6N2E2_688at 794.693 kb on - strand, within Pf6N2E2_688at 794.822 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.839 kb on + strand, within Pf6N2E2_688at 794.840 kb on - strandat 794.840 kb on - strand, within Pf6N2E2_688at 794.840 kb on - strand, within Pf6N2E2_688at 794.840 kb on - strand, within Pf6N2E2_688at 794.908 kb on + strand, within Pf6N2E2_688at 794.909 kb on - strand, within Pf6N2E2_688at 794.951 kb on + strand, within Pf6N2E2_688at 794.952 kb on - strand, within Pf6N2E2_688at 795.001 kb on + strandat 795.017 kb on - strandat 795.017 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
792,844 + +0.4
792,916 + +0.7
792,916 + +0.3
792,917 - Pf6N2E2_686 0.10 +0.5
792,917 - Pf6N2E2_686 0.10 -2.4
793,229 - Pf6N2E2_686 0.53 +1.9
793,257 + Pf6N2E2_686 0.56 -1.9
793,490 + Pf6N2E2_686 0.88 -0.4
793,490 + Pf6N2E2_686 0.88 -0.1
793,490 + Pf6N2E2_686 0.88 -2.5
793,490 + Pf6N2E2_686 0.88 -0.2
793,491 - Pf6N2E2_686 0.88 -0.2
793,491 - Pf6N2E2_686 0.88 +0.4
793,491 - Pf6N2E2_686 0.88 +1.9
793,491 - Pf6N2E2_686 0.88 +1.4
793,491 - Pf6N2E2_686 0.88 -0.8
793,491 - Pf6N2E2_686 0.88 -0.0
793,491 - Pf6N2E2_686 0.88 -1.6
793,492 + Pf6N2E2_686 0.88 +0.6
793,679 + -0.0
793,691 + +0.1
793,691 + +0.8
793,691 + -0.7
793,833 - +0.2
793,888 - Pf6N2E2_687 0.28 -0.9
793,888 - Pf6N2E2_687 0.28 -0.4
793,888 - Pf6N2E2_687 0.28 -0.0
794,013 + Pf6N2E2_687 0.88 -1.5
794,097 + -0.4
794,097 + +1.3
794,097 + +1.5
794,097 + +0.3
794,097 + +1.2
794,097 + +0.9
794,097 + -1.3
794,098 - +1.3
794,098 - +0.2
794,098 - -0.7
794,101 + +0.7
794,101 + +0.4
794,102 - +0.6
794,102 - +0.4
794,156 - +0.6
794,156 - +0.9
794,201 + +0.4
794,201 + -0.6
794,201 + -2.2
794,201 + +1.0
794,201 + -0.6
794,201 + -2.6
794,202 - +0.5
794,202 - +0.6
794,202 - +0.6
794,374 + Pf6N2E2_688 0.23 -1.4
794,374 + Pf6N2E2_688 0.23 -1.7
794,375 - Pf6N2E2_688 0.23 +0.4
794,375 - Pf6N2E2_688 0.23 +2.0
794,485 + Pf6N2E2_688 0.35 +1.8
794,485 + Pf6N2E2_688 0.35 +0.1
794,485 + Pf6N2E2_688 0.35 +0.3
794,485 + Pf6N2E2_688 0.35 -2.5
794,486 - Pf6N2E2_688 0.35 -0.3
794,486 - Pf6N2E2_688 0.35 +1.0
794,486 - Pf6N2E2_688 0.35 -0.8
794,486 - Pf6N2E2_688 0.35 +1.8
794,692 + Pf6N2E2_688 0.57 +1.0
794,693 - Pf6N2E2_688 0.57 -0.5
794,822 + Pf6N2E2_688 0.71 +0.5
794,839 + Pf6N2E2_688 0.73 -1.0
794,839 + Pf6N2E2_688 0.73 -0.6
794,839 + Pf6N2E2_688 0.73 -0.3
794,839 + Pf6N2E2_688 0.73 +1.4
794,839 + Pf6N2E2_688 0.73 +1.3
794,840 - +1.9
794,840 - Pf6N2E2_688 0.73 -1.0
794,840 - Pf6N2E2_688 0.73 -2.0
794,840 - Pf6N2E2_688 0.73 -1.1
794,908 + Pf6N2E2_688 0.81 -0.2
794,909 - Pf6N2E2_688 0.81 +0.6
794,951 + Pf6N2E2_688 0.85 +0.6
794,952 - Pf6N2E2_688 0.85 -0.3
795,001 + +0.5
795,017 - -0.9
795,017 - +1.1

Or see this region's nucleotide sequence