Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5893

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5892 and Pf6N2E2_5893 are separated by 196 nucleotidesPf6N2E2_5893 and Pf6N2E2_6166 are separated by 371 nucleotidesPf6N2E2_6166 and Pf6N2E2_6167 are separated by 5 nucleotidesPf6N2E2_6167 and Pf6N2E2_6168 are separated by 108 nucleotidesPf6N2E2_6168 and Pf6N2E2_6169 are separated by 6 nucleotides Pf6N2E2_5892 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 6,710,613 to 6,712,580 _5892 Pf6N2E2_5893 - FIG00956448: hypothetical protein, at 6,712,777 to 6,713,535 _5893 Pf6N2E2_6166 - tRNA-Glu-TTC, at 6,713,907 to 6,713,979 _6166 Pf6N2E2_6167 - tRNA-Gly-GCC, at 6,713,985 to 6,714,057 _6167 Pf6N2E2_6168 - tRNA-Glu-TTC, at 6,714,166 to 6,714,238 _6168 Pf6N2E2_6169 - tRNA-Gly-GCC, at 6,714,245 to 6,714,317 _6169 Position (kb) 6712 6713 6714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6711.983 kb on + strand, within Pf6N2E2_5892at 6711.983 kb on + strand, within Pf6N2E2_5892at 6711.983 kb on + strand, within Pf6N2E2_5892at 6711.983 kb on + strand, within Pf6N2E2_5892at 6711.984 kb on - strand, within Pf6N2E2_5892at 6712.333 kb on + strand, within Pf6N2E2_5892at 6712.333 kb on + strand, within Pf6N2E2_5892at 6712.333 kb on + strand, within Pf6N2E2_5892at 6712.359 kb on - strand, within Pf6N2E2_5892at 6712.631 kb on + strandat 6712.631 kb on + strandat 6712.632 kb on - strandat 6712.632 kb on - strandat 6712.639 kb on + strandat 6712.639 kb on + strandat 6712.645 kb on - strandat 6712.776 kb on - strandat 6712.785 kb on - strandat 6712.920 kb on - strand, within Pf6N2E2_5893at 6712.937 kb on + strand, within Pf6N2E2_5893at 6712.937 kb on + strand, within Pf6N2E2_5893at 6712.937 kb on + strand, within Pf6N2E2_5893at 6712.938 kb on - strand, within Pf6N2E2_5893at 6712.938 kb on - strand, within Pf6N2E2_5893at 6712.967 kb on + strand, within Pf6N2E2_5893at 6712.967 kb on + strand, within Pf6N2E2_5893at 6712.968 kb on - strand, within Pf6N2E2_5893at 6712.968 kb on - strand, within Pf6N2E2_5893at 6713.415 kb on + strand, within Pf6N2E2_5893at 6713.416 kb on - strand, within Pf6N2E2_5893at 6713.431 kb on + strand, within Pf6N2E2_5893at 6713.432 kb on - strand, within Pf6N2E2_5893at 6713.432 kb on - strand, within Pf6N2E2_5893at 6713.432 kb on - strand, within Pf6N2E2_5893at 6713.432 kb on - strand, within Pf6N2E2_5893at 6713.432 kb on - strand, within Pf6N2E2_5893at 6713.483 kb on + strandat 6713.483 kb on + strandat 6713.484 kb on - strandat 6713.484 kb on - strandat 6713.562 kb on + strandat 6713.588 kb on - strandat 6713.610 kb on + strandat 6713.610 kb on + strandat 6713.611 kb on - strandat 6713.630 kb on - strandat 6713.649 kb on + strandat 6713.651 kb on + strandat 6713.651 kb on + strandat 6713.651 kb on + strandat 6713.651 kb on + strandat 6713.652 kb on - strandat 6713.702 kb on + strandat 6713.702 kb on + strandat 6713.703 kb on - strandat 6713.704 kb on + strandat 6713.704 kb on + strandat 6713.704 kb on + strandat 6713.705 kb on - strandat 6713.727 kb on + strandat 6713.727 kb on + strandat 6713.727 kb on + strandat 6713.727 kb on + strandat 6713.728 kb on - strandat 6713.728 kb on - strandat 6713.729 kb on + strandat 6713.900 kb on + strandat 6713.900 kb on + strandat 6714.140 kb on + strandat 6714.140 kb on + strandat 6714.394 kb on + strandat 6714.465 kb on + strandat 6714.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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6,711,983 + Pf6N2E2_5892 0.70 -0.0
6,711,983 + Pf6N2E2_5892 0.70 -0.4
6,711,983 + Pf6N2E2_5892 0.70 -1.2
6,711,983 + Pf6N2E2_5892 0.70 -0.3
6,711,984 - Pf6N2E2_5892 0.70 -1.8
6,712,333 + Pf6N2E2_5892 0.87 -0.6
6,712,333 + Pf6N2E2_5892 0.87 -0.2
6,712,333 + Pf6N2E2_5892 0.87 -0.1
6,712,359 - Pf6N2E2_5892 0.89 +0.4
6,712,631 + +1.5
6,712,631 + -0.3
6,712,632 - +0.6
6,712,632 - -0.8
6,712,639 + +0.0
6,712,639 + -0.2
6,712,645 - +0.8
6,712,776 - -1.2
6,712,785 - -2.5
6,712,920 - Pf6N2E2_5893 0.19 -2.3
6,712,937 + Pf6N2E2_5893 0.21 -2.1
6,712,937 + Pf6N2E2_5893 0.21 -2.0
6,712,937 + Pf6N2E2_5893 0.21 -1.7
6,712,938 - Pf6N2E2_5893 0.21 -2.5
6,712,938 - Pf6N2E2_5893 0.21 -2.6
6,712,967 + Pf6N2E2_5893 0.25 -3.2
6,712,967 + Pf6N2E2_5893 0.25 -0.8
6,712,968 - Pf6N2E2_5893 0.25 -2.5
6,712,968 - Pf6N2E2_5893 0.25 -2.8
6,713,415 + Pf6N2E2_5893 0.84 -0.0
6,713,416 - Pf6N2E2_5893 0.84 -2.4
6,713,431 + Pf6N2E2_5893 0.86 -1.8
6,713,432 - Pf6N2E2_5893 0.86 -1.7
6,713,432 - Pf6N2E2_5893 0.86 -1.2
6,713,432 - Pf6N2E2_5893 0.86 -2.9
6,713,432 - Pf6N2E2_5893 0.86 -1.7
6,713,432 - Pf6N2E2_5893 0.86 -1.5
6,713,483 + +0.0
6,713,483 + -1.9
6,713,484 - +0.6
6,713,484 - -2.4
6,713,562 + -1.7
6,713,588 - -0.0
6,713,610 + -1.2
6,713,610 + -1.8
6,713,611 - -0.7
6,713,630 - -1.6
6,713,649 + -0.7
6,713,651 + +0.6
6,713,651 + -1.5
6,713,651 + +0.5
6,713,651 + +0.3
6,713,652 - +0.2
6,713,702 + +0.2
6,713,702 + -3.3
6,713,703 - +0.4
6,713,704 + -2.3
6,713,704 + -0.3
6,713,704 + -1.7
6,713,705 - +1.6
6,713,727 + +1.8
6,713,727 + -1.0
6,713,727 + -0.0
6,713,727 + -0.3
6,713,728 - -2.1
6,713,728 - +0.4
6,713,729 + +1.7
6,713,900 + -1.5
6,713,900 + -3.1
6,714,140 + -1.2
6,714,140 + -1.1
6,714,394 + -0.5
6,714,465 + +0.5
6,714,469 - -2.3

Or see this region's nucleotide sequence