Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_585

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_584 and Pf6N2E2_585 overlap by 4 nucleotidesPf6N2E2_585 and Pf6N2E2_586 are separated by 267 nucleotides Pf6N2E2_584 - ABC transporter, periplasmic substrate-binding protein, at 659,542 to 661,395 _584 Pf6N2E2_585 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 661,392 to 663,206 _585 Pf6N2E2_586 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 663,474 to 664,874 _586 Position (kb) 661 662 663 664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 660.421 kb on + strand, within Pf6N2E2_584at 660.452 kb on + strand, within Pf6N2E2_584at 660.453 kb on - strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584at 660.536 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.629 kb on + strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.630 kb on - strand, within Pf6N2E2_584at 660.644 kb on - strand, within Pf6N2E2_584at 660.654 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.692 kb on + strand, within Pf6N2E2_584at 660.693 kb on - strand, within Pf6N2E2_584at 660.693 kb on - strand, within Pf6N2E2_584at 660.700 kb on + strand, within Pf6N2E2_584at 660.861 kb on + strand, within Pf6N2E2_584at 660.861 kb on + strand, within Pf6N2E2_584at 660.929 kb on + strand, within Pf6N2E2_584at 660.933 kb on - strand, within Pf6N2E2_584at 661.041 kb on - strand, within Pf6N2E2_584at 661.041 kb on - strand, within Pf6N2E2_584at 661.097 kb on + strand, within Pf6N2E2_584at 661.142 kb on + strand, within Pf6N2E2_584at 661.304 kb on + strandat 661.304 kb on + strandat 661.305 kb on - strandat 661.444 kb on + strandat 661.444 kb on + strandat 661.444 kb on + strandat 661.445 kb on - strandat 661.481 kb on - strandat 661.495 kb on + strandat 661.495 kb on + strandat 661.496 kb on - strandat 661.496 kb on - strandat 661.504 kb on + strandat 661.522 kb on + strandat 661.523 kb on - strandat 661.643 kb on - strand, within Pf6N2E2_585at 661.643 kb on - strand, within Pf6N2E2_585at 661.685 kb on - strand, within Pf6N2E2_585at 661.771 kb on + strand, within Pf6N2E2_585at 661.772 kb on - strand, within Pf6N2E2_585at 661.772 kb on - strand, within Pf6N2E2_585at 661.834 kb on + strand, within Pf6N2E2_585at 661.834 kb on + strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 661.835 kb on - strand, within Pf6N2E2_585at 662.122 kb on + strand, within Pf6N2E2_585at 662.123 kb on - strand, within Pf6N2E2_585at 662.123 kb on - strand, within Pf6N2E2_585at 662.140 kb on + strand, within Pf6N2E2_585at 662.141 kb on - strand, within Pf6N2E2_585at 662.141 kb on - strand, within Pf6N2E2_585at 662.205 kb on + strand, within Pf6N2E2_585at 662.206 kb on - strand, within Pf6N2E2_585at 662.295 kb on + strand, within Pf6N2E2_585at 662.295 kb on + strand, within Pf6N2E2_585at 662.296 kb on - strand, within Pf6N2E2_585at 662.296 kb on - strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585at 662.362 kb on + strand, within Pf6N2E2_585at 662.416 kb on + strand, within Pf6N2E2_585at 662.416 kb on + strand, within Pf6N2E2_585at 662.440 kb on + strand, within Pf6N2E2_585at 662.440 kb on + strand, within Pf6N2E2_585at 662.440 kb on + strand, within Pf6N2E2_585at 662.441 kb on - strand, within Pf6N2E2_585at 662.447 kb on - strand, within Pf6N2E2_585at 662.706 kb on + strand, within Pf6N2E2_585at 662.782 kb on + strand, within Pf6N2E2_585at 662.782 kb on + strand, within Pf6N2E2_585at 662.887 kb on + strand, within Pf6N2E2_585at 662.887 kb on + strand, within Pf6N2E2_585at 662.887 kb on + strand, within Pf6N2E2_585at 663.016 kb on + strand, within Pf6N2E2_585at 663.142 kb on + strandat 663.219 kb on + strandat 663.219 kb on + strandat 663.219 kb on + strandat 663.219 kb on + strandat 663.220 kb on - strandat 663.220 kb on - strandat 663.220 kb on - strandat 663.257 kb on + strandat 663.266 kb on + strandat 663.266 kb on + strandat 663.267 kb on - strandat 663.267 kb on - strandat 663.271 kb on + strandat 663.281 kb on + strandat 663.391 kb on + strandat 663.488 kb on - strandat 663.586 kb on + strandat 663.586 kb on + strandat 663.586 kb on + strandat 663.587 kb on - strandat 663.587 kb on - strandat 663.587 kb on - strandat 663.587 kb on - strandat 663.587 kb on - strandat 663.613 kb on + strandat 663.614 kb on - strand, within Pf6N2E2_586at 663.614 kb on - strand, within Pf6N2E2_586at 663.614 kb on - strand, within Pf6N2E2_586at 663.826 kb on + strand, within Pf6N2E2_586at 664.139 kb on - strand, within Pf6N2E2_586at 664.189 kb on + strand, within Pf6N2E2_586at 664.189 kb on + strand, within Pf6N2E2_586at 664.189 kb on + strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586at 664.190 kb on - strand, within Pf6N2E2_586

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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660,421 + Pf6N2E2_584 0.47 -1.3
660,452 + Pf6N2E2_584 0.49 +0.1
660,453 - Pf6N2E2_584 0.49 -0.6
660,536 + Pf6N2E2_584 0.54 -3.7
660,536 + Pf6N2E2_584 0.54 -1.1
660,629 + Pf6N2E2_584 0.59 -0.7
660,629 + Pf6N2E2_584 0.59 -0.5
660,629 + Pf6N2E2_584 0.59 -1.3
660,630 - Pf6N2E2_584 0.59 -1.5
660,630 - Pf6N2E2_584 0.59 -1.7
660,630 - Pf6N2E2_584 0.59 -0.6
660,630 - Pf6N2E2_584 0.59 -1.9
660,644 - Pf6N2E2_584 0.59 -1.5
660,654 + Pf6N2E2_584 0.60 -3.0
660,692 + Pf6N2E2_584 0.62 -2.3
660,692 + Pf6N2E2_584 0.62 -1.7
660,692 + Pf6N2E2_584 0.62 -1.1
660,692 + Pf6N2E2_584 0.62 -1.0
660,693 - Pf6N2E2_584 0.62 -0.3
660,693 - Pf6N2E2_584 0.62 -1.5
660,700 + Pf6N2E2_584 0.62 -1.0
660,861 + Pf6N2E2_584 0.71 -3.0
660,861 + Pf6N2E2_584 0.71 -0.8
660,929 + Pf6N2E2_584 0.75 -1.2
660,933 - Pf6N2E2_584 0.75 -1.1
661,041 - Pf6N2E2_584 0.81 -1.0
661,041 - Pf6N2E2_584 0.81 -1.0
661,097 + Pf6N2E2_584 0.84 -1.1
661,142 + Pf6N2E2_584 0.86 -1.4
661,304 + -0.9
661,304 + -2.6
661,305 - -2.8
661,444 + -1.5
661,444 + -1.9
661,444 + -2.1
661,445 - -1.8
661,481 - +1.0
661,495 + -1.2
661,495 + -0.8
661,496 - -0.5
661,496 - -0.4
661,504 + -1.2
661,522 + -3.4
661,523 - +0.8
661,643 - Pf6N2E2_585 0.14 -0.8
661,643 - Pf6N2E2_585 0.14 +2.9
661,685 - Pf6N2E2_585 0.16 +0.3
661,771 + Pf6N2E2_585 0.21 -1.3
661,772 - Pf6N2E2_585 0.21 +0.0
661,772 - Pf6N2E2_585 0.21 +1.1
661,834 + Pf6N2E2_585 0.24 -2.9
661,834 + Pf6N2E2_585 0.24 -0.3
661,835 - Pf6N2E2_585 0.24 -0.3
661,835 - Pf6N2E2_585 0.24 +0.7
661,835 - Pf6N2E2_585 0.24 +0.0
661,835 - Pf6N2E2_585 0.24 -0.8
662,122 + Pf6N2E2_585 0.40 +0.2
662,123 - Pf6N2E2_585 0.40 -0.3
662,123 - Pf6N2E2_585 0.40 -0.1
662,140 + Pf6N2E2_585 0.41 -0.6
662,141 - Pf6N2E2_585 0.41 +0.5
662,141 - Pf6N2E2_585 0.41 +0.2
662,205 + Pf6N2E2_585 0.45 -1.7
662,206 - Pf6N2E2_585 0.45 +0.8
662,295 + Pf6N2E2_585 0.50 +0.0
662,295 + Pf6N2E2_585 0.50 -0.7
662,296 - Pf6N2E2_585 0.50 -0.5
662,296 - Pf6N2E2_585 0.50 -1.2
662,362 + Pf6N2E2_585 0.53 -0.6
662,362 + Pf6N2E2_585 0.53 -2.0
662,362 + Pf6N2E2_585 0.53 -1.8
662,416 + Pf6N2E2_585 0.56 -3.0
662,416 + Pf6N2E2_585 0.56 -0.7
662,440 + Pf6N2E2_585 0.58 -0.1
662,440 + Pf6N2E2_585 0.58 +0.9
662,440 + Pf6N2E2_585 0.58 -1.2
662,441 - Pf6N2E2_585 0.58 -0.5
662,447 - Pf6N2E2_585 0.58 -0.5
662,706 + Pf6N2E2_585 0.72 -0.2
662,782 + Pf6N2E2_585 0.77 -2.4
662,782 + Pf6N2E2_585 0.77 -2.0
662,887 + Pf6N2E2_585 0.82 -0.3
662,887 + Pf6N2E2_585 0.82 -0.9
662,887 + Pf6N2E2_585 0.82 -2.0
663,016 + Pf6N2E2_585 0.89 -1.3
663,142 + -1.2
663,219 + -0.5
663,219 + -1.1
663,219 + -1.6
663,219 + -1.4
663,220 - -0.2
663,220 - -0.1
663,220 - -3.2
663,257 + -2.0
663,266 + -0.7
663,266 + -1.9
663,267 - +0.4
663,267 - +0.6
663,271 + -0.0
663,281 + -0.1
663,391 + +0.0
663,488 - -1.0
663,586 + -0.8
663,586 + +0.4
663,586 + -0.2
663,587 - -0.9
663,587 - +0.1
663,587 - +0.2
663,587 - -1.4
663,587 - -0.8
663,613 + -0.3
663,614 - Pf6N2E2_586 0.10 +0.5
663,614 - Pf6N2E2_586 0.10 +0.8
663,614 - Pf6N2E2_586 0.10 +0.2
663,826 + Pf6N2E2_586 0.25 -1.9
664,139 - Pf6N2E2_586 0.47 -2.6
664,189 + Pf6N2E2_586 0.51 -0.3
664,189 + Pf6N2E2_586 0.51 -0.8
664,189 + Pf6N2E2_586 0.51 -3.4
664,190 - Pf6N2E2_586 0.51 -0.5
664,190 - Pf6N2E2_586 0.51 -2.9
664,190 - Pf6N2E2_586 0.51 -2.6
664,190 - Pf6N2E2_586 0.51 -1.3
664,190 - Pf6N2E2_586 0.51 -1.0
664,190 - Pf6N2E2_586 0.51 -0.7
664,190 - Pf6N2E2_586 0.51 -2.6

Or see this region's nucleotide sequence