Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5186

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5184 and Pf6N2E2_5185 overlap by 4 nucleotidesPf6N2E2_5185 and Pf6N2E2_5186 overlap by 11 nucleotidesPf6N2E2_5186 and Pf6N2E2_5187 are separated by 82 nucleotidesPf6N2E2_5187 and Pf6N2E2_5188 overlap by 8 nucleotides Pf6N2E2_5184 - Chromosome segregation ATPases, at 5,978,960 to 5,981,800 _5184 Pf6N2E2_5185 - FIG00961017: hypothetical protein, at 5,981,797 to 5,982,498 _5185 Pf6N2E2_5186 - FIG00954491: hypothetical protein, at 5,982,488 to 5,983,867 _5186 Pf6N2E2_5187 - Periplasmic protein TonB, links inner and outer membranes, at 5,983,950 to 5,984,729 _5187 Pf6N2E2_5188 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 5,984,722 to 5,985,174 _5188 Position (kb) 5982 5983 5984Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5981.565 kb on + strandat 5981.565 kb on + strandat 5981.565 kb on + strandat 5981.565 kb on + strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.566 kb on - strandat 5981.586 kb on + strandat 5981.586 kb on + strandat 5981.587 kb on - strandat 5981.587 kb on - strandat 5981.587 kb on - strandat 5981.587 kb on - strandat 5981.613 kb on + strandat 5981.613 kb on + strandat 5981.613 kb on + strandat 5981.683 kb on + strandat 5981.703 kb on + strandat 5981.704 kb on - strandat 5981.896 kb on + strand, within Pf6N2E2_5185at 5981.897 kb on - strand, within Pf6N2E2_5185at 5981.897 kb on - strand, within Pf6N2E2_5185at 5982.038 kb on + strand, within Pf6N2E2_5185at 5982.038 kb on + strand, within Pf6N2E2_5185at 5982.039 kb on - strand, within Pf6N2E2_5185at 5982.118 kb on + strand, within Pf6N2E2_5185at 5982.314 kb on + strand, within Pf6N2E2_5185at 5982.314 kb on + strand, within Pf6N2E2_5185at 5982.314 kb on + strand, within Pf6N2E2_5185at 5982.314 kb on + strand, within Pf6N2E2_5185at 5982.314 kb on + strand, within Pf6N2E2_5185at 5982.315 kb on - strand, within Pf6N2E2_5185at 5982.315 kb on - strand, within Pf6N2E2_5185at 5982.315 kb on - strand, within Pf6N2E2_5185at 5982.317 kb on + strand, within Pf6N2E2_5185at 5982.317 kb on + strand, within Pf6N2E2_5185at 5982.317 kb on + strand, within Pf6N2E2_5185at 5982.317 kb on + strand, within Pf6N2E2_5185at 5982.318 kb on - strand, within Pf6N2E2_5185at 5982.375 kb on - strand, within Pf6N2E2_5185at 5982.405 kb on - strand, within Pf6N2E2_5185at 5982.434 kb on + strandat 5982.484 kb on + strandat 5982.485 kb on - strandat 5982.588 kb on + strandat 5982.588 kb on + strandat 5982.588 kb on + strandat 5982.846 kb on + strand, within Pf6N2E2_5186at 5982.846 kb on + strand, within Pf6N2E2_5186at 5982.846 kb on + strand, within Pf6N2E2_5186at 5982.846 kb on + strand, within Pf6N2E2_5186at 5982.846 kb on + strand, within Pf6N2E2_5186at 5982.847 kb on - strandat 5982.852 kb on + strand, within Pf6N2E2_5186at 5982.852 kb on + strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5982.853 kb on - strand, within Pf6N2E2_5186at 5983.230 kb on + strand, within Pf6N2E2_5186at 5983.231 kb on - strand, within Pf6N2E2_5186at 5983.231 kb on - strand, within Pf6N2E2_5186at 5983.231 kb on - strand, within Pf6N2E2_5186at 5983.231 kb on - strand, within Pf6N2E2_5186at 5983.260 kb on + strand, within Pf6N2E2_5186at 5983.260 kb on + strand, within Pf6N2E2_5186at 5983.432 kb on + strand, within Pf6N2E2_5186at 5983.432 kb on + strand, within Pf6N2E2_5186at 5983.434 kb on + strand, within Pf6N2E2_5186at 5983.434 kb on + strand, within Pf6N2E2_5186at 5983.434 kb on + strand, within Pf6N2E2_5186at 5983.464 kb on + strand, within Pf6N2E2_5186at 5983.464 kb on + strand, within Pf6N2E2_5186at 5983.464 kb on + strand, within Pf6N2E2_5186at 5983.512 kb on + strand, within Pf6N2E2_5186at 5983.793 kb on + strandat 5983.794 kb on - strandat 5983.794 kb on - strandat 5983.794 kb on - strandat 5983.808 kb on + strandat 5983.869 kb on + strandat 5983.870 kb on - strandat 5983.870 kb on - strandat 5983.870 kb on - strandat 5983.908 kb on + strandat 5984.735 kb on + strandat 5984.736 kb on - strandat 5984.788 kb on + strand, within Pf6N2E2_5188at 5984.788 kb on + strand, within Pf6N2E2_5188at 5984.797 kb on + strand, within Pf6N2E2_5188at 5984.798 kb on - strand, within Pf6N2E2_5188at 5984.846 kb on - strand, within Pf6N2E2_5188

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
5,981,565 + -1.2
5,981,565 + +0.5
5,981,565 + +0.4
5,981,565 + +0.7
5,981,566 - -2.4
5,981,566 - -1.1
5,981,566 - -1.9
5,981,566 - -1.4
5,981,566 - -2.9
5,981,566 - -0.4
5,981,566 - -1.7
5,981,586 + -2.2
5,981,586 + -1.1
5,981,587 - +2.6
5,981,587 - -1.4
5,981,587 - -1.9
5,981,587 - -2.2
5,981,613 + -2.4
5,981,613 + -1.4
5,981,613 + -1.6
5,981,683 + -1.7
5,981,703 + -1.2
5,981,704 - -0.5
5,981,896 + Pf6N2E2_5185 0.14 -1.6
5,981,897 - Pf6N2E2_5185 0.14 -0.3
5,981,897 - Pf6N2E2_5185 0.14 +0.6
5,982,038 + Pf6N2E2_5185 0.34 -1.3
5,982,038 + Pf6N2E2_5185 0.34 -3.1
5,982,039 - Pf6N2E2_5185 0.34 -3.4
5,982,118 + Pf6N2E2_5185 0.46 -2.1
5,982,314 + Pf6N2E2_5185 0.74 -1.8
5,982,314 + Pf6N2E2_5185 0.74 -0.2
5,982,314 + Pf6N2E2_5185 0.74 -1.3
5,982,314 + Pf6N2E2_5185 0.74 -2.1
5,982,314 + Pf6N2E2_5185 0.74 -1.6
5,982,315 - Pf6N2E2_5185 0.74 -2.9
5,982,315 - Pf6N2E2_5185 0.74 -2.8
5,982,315 - Pf6N2E2_5185 0.74 -2.0
5,982,317 + Pf6N2E2_5185 0.74 +0.2
5,982,317 + Pf6N2E2_5185 0.74 +0.1
5,982,317 + Pf6N2E2_5185 0.74 -1.4
5,982,317 + Pf6N2E2_5185 0.74 -0.8
5,982,318 - Pf6N2E2_5185 0.74 -0.2
5,982,375 - Pf6N2E2_5185 0.82 -3.1
5,982,405 - Pf6N2E2_5185 0.87 -0.4
5,982,434 + -1.9
5,982,484 + +1.5
5,982,485 - -2.1
5,982,588 + -2.5
5,982,588 + +0.7
5,982,588 + -3.3
5,982,846 + Pf6N2E2_5186 0.26 -2.6
5,982,846 + Pf6N2E2_5186 0.26 -0.5
5,982,846 + Pf6N2E2_5186 0.26 -2.6
5,982,846 + Pf6N2E2_5186 0.26 -2.5
5,982,846 + Pf6N2E2_5186 0.26 -0.9
5,982,847 - +2.1
5,982,852 + Pf6N2E2_5186 0.26 -1.6
5,982,852 + Pf6N2E2_5186 0.26 -2.4
5,982,853 - Pf6N2E2_5186 0.26 -0.4
5,982,853 - Pf6N2E2_5186 0.26 -3.0
5,982,853 - Pf6N2E2_5186 0.26 -0.5
5,982,853 - Pf6N2E2_5186 0.26 -1.4
5,982,853 - Pf6N2E2_5186 0.26 -0.5
5,982,853 - Pf6N2E2_5186 0.26 -2.2
5,982,853 - Pf6N2E2_5186 0.26 -1.8
5,983,230 + Pf6N2E2_5186 0.54 -0.7
5,983,231 - Pf6N2E2_5186 0.54 -2.9
5,983,231 - Pf6N2E2_5186 0.54 -1.3
5,983,231 - Pf6N2E2_5186 0.54 -1.7
5,983,231 - Pf6N2E2_5186 0.54 -2.4
5,983,260 + Pf6N2E2_5186 0.56 -2.9
5,983,260 + Pf6N2E2_5186 0.56 -2.4
5,983,432 + Pf6N2E2_5186 0.68 -2.2
5,983,432 + Pf6N2E2_5186 0.68 -1.9
5,983,434 + Pf6N2E2_5186 0.69 -3.3
5,983,434 + Pf6N2E2_5186 0.69 -2.7
5,983,434 + Pf6N2E2_5186 0.69 -4.0
5,983,464 + Pf6N2E2_5186 0.71 -0.9
5,983,464 + Pf6N2E2_5186 0.71 -0.7
5,983,464 + Pf6N2E2_5186 0.71 -2.5
5,983,512 + Pf6N2E2_5186 0.74 -1.6
5,983,793 + -1.1
5,983,794 - +0.7
5,983,794 - +0.4
5,983,794 - -1.0
5,983,808 + -0.2
5,983,869 + -0.3
5,983,870 - +0.2
5,983,870 - +1.3
5,983,870 - +0.8
5,983,908 + -0.1
5,984,735 + -1.2
5,984,736 - +0.7
5,984,788 + Pf6N2E2_5188 0.15 -0.3
5,984,788 + Pf6N2E2_5188 0.15 -2.2
5,984,797 + Pf6N2E2_5188 0.17 +0.3
5,984,798 - Pf6N2E2_5188 0.17 -1.2
5,984,846 - Pf6N2E2_5188 0.27 -2.8

Or see this region's nucleotide sequence