Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5129

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5127 and Pf6N2E2_5128 overlap by 4 nucleotidesPf6N2E2_5128 and Pf6N2E2_5129 are separated by 130 nucleotidesPf6N2E2_5129 and Pf6N2E2_6146 are separated by 415 nucleotidesPf6N2E2_6146 and Pf6N2E2_6147 are separated by 10 nucleotidesPf6N2E2_6147 and Pf6N2E2_6148 are separated by 8 nucleotidesPf6N2E2_6148 and Pf6N2E2_6149 are separated by 96 nucleotidesPf6N2E2_6149 and Pf6N2E2_5130 overlap by 9 nucleotidesPf6N2E2_5130 and Pf6N2E2_5131 are separated by 30 nucleotides Pf6N2E2_5127 - Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70), at 5,911,362 to 5,912,282 _5127 Pf6N2E2_5128 - COG1496: Uncharacterized conserved protein, at 5,912,279 to 5,913,004 _5128 Pf6N2E2_5129 - ClpB protein, at 5,913,135 to 5,915,699 _5129 Pf6N2E2_6146 - tRNA-Asn-GTT, at 5,916,115 to 5,916,187 _6146 Pf6N2E2_6147 - tRNA-Pro-TGG, at 5,916,198 to 5,916,271 _6147 Pf6N2E2_6148 - tRNA-Lys-TTT, at 5,916,280 to 5,916,352 _6148 Pf6N2E2_6149 - tRNA-Pro-TGG, at 5,916,449 to 5,916,522 _6149 Pf6N2E2_5130 - hypothetical protein, at 5,916,514 to 5,916,642 _5130 Pf6N2E2_5131 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 5,916,673 to 5,918,298 _5131 Position (kb) 5913 5914 5915 5916Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5912.472 kb on + strand, within Pf6N2E2_5128at 5912.851 kb on + strand, within Pf6N2E2_5128at 5912.855 kb on + strand, within Pf6N2E2_5128at 5912.855 kb on + strand, within Pf6N2E2_5128at 5912.856 kb on - strand, within Pf6N2E2_5128at 5912.856 kb on - strand, within Pf6N2E2_5128at 5912.903 kb on + strand, within Pf6N2E2_5128at 5913.003 kb on - strandat 5913.019 kb on + strandat 5913.020 kb on - strandat 5913.020 kb on - strandat 5913.062 kb on + strandat 5913.062 kb on + strandat 5913.062 kb on + strandat 5913.062 kb on + strandat 5913.062 kb on + strandat 5913.062 kb on + strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.063 kb on - strandat 5913.070 kb on + strandat 5913.071 kb on - strandat 5913.071 kb on - strandat 5913.071 kb on - strandat 5913.071 kb on - strandat 5913.121 kb on + strandat 5913.140 kb on + strandat 5913.140 kb on + strandat 5913.140 kb on + strandat 5913.140 kb on + strandat 5913.141 kb on - strandat 5913.141 kb on - strandat 5913.163 kb on + strandat 5913.163 kb on + strandat 5913.164 kb on - strandat 5913.164 kb on - strandat 5913.164 kb on - strandat 5913.164 kb on - strandat 5913.347 kb on - strandat 5913.552 kb on - strand, within Pf6N2E2_5129at 5913.624 kb on + strand, within Pf6N2E2_5129at 5913.624 kb on + strand, within Pf6N2E2_5129at 5913.624 kb on + strand, within Pf6N2E2_5129at 5913.624 kb on + strand, within Pf6N2E2_5129at 5913.624 kb on + strand, within Pf6N2E2_5129at 5913.625 kb on - strandat 5913.625 kb on - strand, within Pf6N2E2_5129at 5913.625 kb on - strand, within Pf6N2E2_5129at 5913.625 kb on - strand, within Pf6N2E2_5129at 5913.625 kb on - strand, within Pf6N2E2_5129at 5913.701 kb on + strand, within Pf6N2E2_5129at 5913.702 kb on - strand, within Pf6N2E2_5129at 5913.767 kb on + strand, within Pf6N2E2_5129at 5913.768 kb on - strand, within Pf6N2E2_5129at 5913.836 kb on + strand, within Pf6N2E2_5129at 5913.885 kb on + strand, within Pf6N2E2_5129at 5913.885 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.098 kb on + strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.099 kb on - strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.100 kb on + strand, within Pf6N2E2_5129at 5914.101 kb on - strand, within Pf6N2E2_5129at 5914.101 kb on - strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.102 kb on + strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.103 kb on - strand, within Pf6N2E2_5129at 5914.203 kb on + strand, within Pf6N2E2_5129at 5914.204 kb on - strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.272 kb on + strand, within Pf6N2E2_5129at 5914.273 kb on - strand, within Pf6N2E2_5129at 5914.273 kb on - strand, within Pf6N2E2_5129at 5914.607 kb on + strand, within Pf6N2E2_5129at 5914.641 kb on + strand, within Pf6N2E2_5129at 5914.642 kb on - strand, within Pf6N2E2_5129at 5915.091 kb on + strand, within Pf6N2E2_5129at 5915.100 kb on + strand, within Pf6N2E2_5129at 5915.101 kb on - strand, within Pf6N2E2_5129at 5915.115 kb on + strand, within Pf6N2E2_5129at 5915.116 kb on - strand, within Pf6N2E2_5129at 5915.563 kb on - strandat 5915.936 kb on + strandat 5915.936 kb on + strandat 5916.387 kb on + strandat 5916.526 kb on + strandat 5916.526 kb on + strandat 5916.526 kb on + strandat 5916.541 kb on + strand, within Pf6N2E2_5130at 5916.541 kb on + strand, within Pf6N2E2_5130at 5916.551 kb on + strand, within Pf6N2E2_5130at 5916.657 kb on - strandat 5916.672 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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5,912,472 + Pf6N2E2_5128 0.27 -3.7
5,912,851 + Pf6N2E2_5128 0.79 -2.7
5,912,855 + Pf6N2E2_5128 0.79 -1.2
5,912,855 + Pf6N2E2_5128 0.79 -0.8
5,912,856 - Pf6N2E2_5128 0.79 -0.6
5,912,856 - Pf6N2E2_5128 0.79 +0.8
5,912,903 + Pf6N2E2_5128 0.86 -2.7
5,913,003 - +0.8
5,913,019 + -0.4
5,913,020 - +0.3
5,913,020 - +1.7
5,913,062 + -0.4
5,913,062 + +1.2
5,913,062 + -0.0
5,913,062 + -0.0
5,913,062 + +0.4
5,913,062 + +0.7
5,913,063 - -3.3
5,913,063 - -2.9
5,913,063 - -1.5
5,913,063 - -3.6
5,913,063 - +0.2
5,913,063 - -1.9
5,913,063 - -3.1
5,913,063 - -1.0
5,913,063 - -2.9
5,913,063 - -1.8
5,913,070 + -0.3
5,913,071 - -2.2
5,913,071 - -1.6
5,913,071 - -1.5
5,913,071 - -2.8
5,913,121 + -1.1
5,913,140 + -1.1
5,913,140 + -1.4
5,913,140 + -2.4
5,913,140 + -3.0
5,913,141 - -1.5
5,913,141 - -1.9
5,913,163 + -0.3
5,913,163 + -1.2
5,913,164 - -2.1
5,913,164 - -0.7
5,913,164 - -0.5
5,913,164 - -0.0
5,913,347 - -1.6
5,913,552 - Pf6N2E2_5129 0.16 -2.3
5,913,624 + Pf6N2E2_5129 0.19 -2.8
5,913,624 + Pf6N2E2_5129 0.19 -2.5
5,913,624 + Pf6N2E2_5129 0.19 -2.6
5,913,624 + Pf6N2E2_5129 0.19 -1.9
5,913,624 + Pf6N2E2_5129 0.19 -2.6
5,913,625 - +1.3
5,913,625 - Pf6N2E2_5129 0.19 -2.5
5,913,625 - Pf6N2E2_5129 0.19 -1.7
5,913,625 - Pf6N2E2_5129 0.19 -0.5
5,913,625 - Pf6N2E2_5129 0.19 -3.3
5,913,701 + Pf6N2E2_5129 0.22 -0.5
5,913,702 - Pf6N2E2_5129 0.22 -1.9
5,913,767 + Pf6N2E2_5129 0.25 -2.1
5,913,768 - Pf6N2E2_5129 0.25 -1.7
5,913,836 + Pf6N2E2_5129 0.27 -2.8
5,913,885 + Pf6N2E2_5129 0.29 -2.9
5,913,885 + Pf6N2E2_5129 0.29 -1.6
5,914,098 + Pf6N2E2_5129 0.38 -1.9
5,914,098 + Pf6N2E2_5129 0.38 +0.7
5,914,098 + Pf6N2E2_5129 0.38 -1.5
5,914,098 + Pf6N2E2_5129 0.38 -2.1
5,914,098 + Pf6N2E2_5129 0.38 -2.0
5,914,098 + Pf6N2E2_5129 0.38 -1.5
5,914,098 + Pf6N2E2_5129 0.38 -0.8
5,914,098 + Pf6N2E2_5129 0.38 -3.3
5,914,098 + Pf6N2E2_5129 0.38 -2.0
5,914,098 + Pf6N2E2_5129 0.38 -1.8
5,914,099 - Pf6N2E2_5129 0.38 -0.1
5,914,099 - Pf6N2E2_5129 0.38 -2.1
5,914,099 - Pf6N2E2_5129 0.38 -2.7
5,914,099 - Pf6N2E2_5129 0.38 -3.2
5,914,099 - Pf6N2E2_5129 0.38 -2.0
5,914,099 - Pf6N2E2_5129 0.38 -1.2
5,914,099 - Pf6N2E2_5129 0.38 -3.3
5,914,099 - Pf6N2E2_5129 0.38 -2.8
5,914,099 - Pf6N2E2_5129 0.38 -2.3
5,914,100 + Pf6N2E2_5129 0.38 -1.3
5,914,100 + Pf6N2E2_5129 0.38 -1.4
5,914,100 + Pf6N2E2_5129 0.38 -1.7
5,914,100 + Pf6N2E2_5129 0.38 -2.9
5,914,100 + Pf6N2E2_5129 0.38 -3.5
5,914,100 + Pf6N2E2_5129 0.38 -0.5
5,914,100 + Pf6N2E2_5129 0.38 -1.8
5,914,100 + Pf6N2E2_5129 0.38 -3.2
5,914,100 + Pf6N2E2_5129 0.38 -2.7
5,914,100 + Pf6N2E2_5129 0.38 -2.1
5,914,101 - Pf6N2E2_5129 0.38 -3.4
5,914,101 - Pf6N2E2_5129 0.38 -1.9
5,914,102 + Pf6N2E2_5129 0.38 -0.7
5,914,102 + Pf6N2E2_5129 0.38 -2.4
5,914,102 + Pf6N2E2_5129 0.38 -3.8
5,914,102 + Pf6N2E2_5129 0.38 -1.9
5,914,102 + Pf6N2E2_5129 0.38 -2.2
5,914,102 + Pf6N2E2_5129 0.38 -1.6
5,914,102 + Pf6N2E2_5129 0.38 -3.7
5,914,102 + Pf6N2E2_5129 0.38 -3.1
5,914,102 + Pf6N2E2_5129 0.38 -1.5
5,914,102 + Pf6N2E2_5129 0.38 -2.6
5,914,103 - Pf6N2E2_5129 0.38 -2.7
5,914,103 - Pf6N2E2_5129 0.38 -0.9
5,914,103 - Pf6N2E2_5129 0.38 -2.7
5,914,103 - Pf6N2E2_5129 0.38 -2.6
5,914,103 - Pf6N2E2_5129 0.38 -1.9
5,914,103 - Pf6N2E2_5129 0.38 -1.6
5,914,103 - Pf6N2E2_5129 0.38 -2.9
5,914,103 - Pf6N2E2_5129 0.38 -1.7
5,914,203 + Pf6N2E2_5129 0.42 -2.6
5,914,204 - Pf6N2E2_5129 0.42 -2.5
5,914,272 + Pf6N2E2_5129 0.44 -1.7
5,914,272 + Pf6N2E2_5129 0.44 -1.7
5,914,272 + Pf6N2E2_5129 0.44 -0.5
5,914,272 + Pf6N2E2_5129 0.44 -2.9
5,914,272 + Pf6N2E2_5129 0.44 -3.9
5,914,272 + Pf6N2E2_5129 0.44 -2.3
5,914,273 - Pf6N2E2_5129 0.44 -2.4
5,914,273 - Pf6N2E2_5129 0.44 -2.5
5,914,607 + Pf6N2E2_5129 0.57 -1.9
5,914,641 + Pf6N2E2_5129 0.59 -2.9
5,914,642 - Pf6N2E2_5129 0.59 -2.8
5,915,091 + Pf6N2E2_5129 0.76 -2.6
5,915,100 + Pf6N2E2_5129 0.77 -1.6
5,915,101 - Pf6N2E2_5129 0.77 -1.2
5,915,115 + Pf6N2E2_5129 0.77 -2.7
5,915,116 - Pf6N2E2_5129 0.77 -1.7
5,915,563 - -1.7
5,915,936 + -0.1
5,915,936 + +1.0
5,916,387 + -0.3
5,916,526 + +0.5
5,916,526 + -2.1
5,916,526 + -0.9
5,916,541 + Pf6N2E2_5130 0.21 +0.6
5,916,541 + Pf6N2E2_5130 0.21 -2.8
5,916,551 + Pf6N2E2_5130 0.29 +0.3
5,916,657 - -1.1
5,916,672 + +1.7

Or see this region's nucleotide sequence