Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5006

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5005 and Pf6N2E2_5006 are separated by 151 nucleotidesPf6N2E2_5006 and Pf6N2E2_5007 are separated by 112 nucleotides Pf6N2E2_5005 - hypothetical protein, at 5,771,374 to 5,771,499 _5005 Pf6N2E2_5006 - Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13), at 5,771,651 to 5,772,595 _5006 Pf6N2E2_5007 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 5,772,708 to 5,774,030 _5007 Position (kb) 5771 5772 5773Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5770.818 kb on + strandat 5770.818 kb on + strandat 5770.819 kb on - strandat 5770.881 kb on + strandat 5770.882 kb on - strandat 5770.882 kb on - strandat 5770.884 kb on - strandat 5770.884 kb on - strandat 5770.898 kb on - strandat 5770.898 kb on - strandat 5770.950 kb on + strandat 5770.950 kb on + strandat 5770.950 kb on + strandat 5770.951 kb on - strandat 5770.951 kb on - strandat 5771.048 kb on + strandat 5771.048 kb on + strandat 5771.049 kb on - strandat 5771.057 kb on - strandat 5771.089 kb on - strandat 5771.103 kb on - strandat 5771.270 kb on - strandat 5771.363 kb on + strandat 5771.547 kb on + strandat 5771.578 kb on + strandat 5771.592 kb on + strandat 5771.592 kb on + strandat 5771.592 kb on + strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.593 kb on - strandat 5771.597 kb on - strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.620 kb on + strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.621 kb on - strandat 5771.628 kb on - strandat 5771.628 kb on - strandat 5771.628 kb on - strandat 5771.628 kb on - strandat 5771.628 kb on - strandat 5771.664 kb on - strandat 5771.664 kb on - strandat 5771.670 kb on + strandat 5771.831 kb on + strand, within Pf6N2E2_5006at 5771.831 kb on + strand, within Pf6N2E2_5006at 5771.831 kb on + strand, within Pf6N2E2_5006at 5771.832 kb on - strand, within Pf6N2E2_5006at 5771.832 kb on - strand, within Pf6N2E2_5006at 5771.832 kb on - strand, within Pf6N2E2_5006at 5771.853 kb on + strand, within Pf6N2E2_5006at 5771.854 kb on - strand, within Pf6N2E2_5006at 5771.854 kb on - strand, within Pf6N2E2_5006at 5771.991 kb on + strand, within Pf6N2E2_5006at 5771.991 kb on + strand, within Pf6N2E2_5006at 5771.996 kb on + strand, within Pf6N2E2_5006at 5771.997 kb on - strand, within Pf6N2E2_5006at 5772.159 kb on + strand, within Pf6N2E2_5006at 5772.159 kb on + strand, within Pf6N2E2_5006at 5772.160 kb on - strand, within Pf6N2E2_5006at 5772.160 kb on - strand, within Pf6N2E2_5006at 5772.160 kb on - strand, within Pf6N2E2_5006at 5772.176 kb on + strand, within Pf6N2E2_5006at 5772.176 kb on + strand, within Pf6N2E2_5006at 5772.177 kb on - strand, within Pf6N2E2_5006at 5772.323 kb on + strand, within Pf6N2E2_5006at 5772.378 kb on + strand, within Pf6N2E2_5006at 5772.594 kb on - strandat 5772.601 kb on + strandat 5772.602 kb on - strandat 5772.602 kb on - strandat 5772.700 kb on - strandat 5772.922 kb on + strand, within Pf6N2E2_5007at 5772.923 kb on - strand, within Pf6N2E2_5007at 5772.958 kb on - strand, within Pf6N2E2_5007at 5772.976 kb on + strand, within Pf6N2E2_5007at 5772.977 kb on - strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.994 kb on + strand, within Pf6N2E2_5007at 5772.995 kb on - strand, within Pf6N2E2_5007at 5773.111 kb on + strand, within Pf6N2E2_5007at 5773.112 kb on - strand, within Pf6N2E2_5007at 5773.177 kb on + strand, within Pf6N2E2_5007at 5773.250 kb on - strand, within Pf6N2E2_5007at 5773.250 kb on - strand, within Pf6N2E2_5007at 5773.336 kb on + strand, within Pf6N2E2_5007at 5773.336 kb on + strand, within Pf6N2E2_5007at 5773.336 kb on + strand, within Pf6N2E2_5007at 5773.336 kb on + strand, within Pf6N2E2_5007at 5773.336 kb on + strand, within Pf6N2E2_5007at 5773.337 kb on - strand, within Pf6N2E2_5007at 5773.337 kb on - strand, within Pf6N2E2_5007at 5773.337 kb on - strand, within Pf6N2E2_5007at 5773.514 kb on + strand, within Pf6N2E2_5007at 5773.514 kb on + strand, within Pf6N2E2_5007

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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5,770,818 + -2.0
5,770,818 + +0.3
5,770,819 - -0.1
5,770,881 + +0.5
5,770,882 - +0.1
5,770,882 - -1.9
5,770,884 - +1.8
5,770,884 - +1.0
5,770,898 - -0.4
5,770,898 - +0.3
5,770,950 + +1.1
5,770,950 + -1.1
5,770,950 + -0.1
5,770,951 - +1.2
5,770,951 - +0.5
5,771,048 + -1.0
5,771,048 + +1.1
5,771,049 - +0.7
5,771,057 - +1.2
5,771,089 - +0.5
5,771,103 - +0.2
5,771,270 - +0.3
5,771,363 + -2.7
5,771,547 + +0.6
5,771,578 + -0.2
5,771,592 + +1.2
5,771,592 + +1.6
5,771,592 + -0.1
5,771,593 - -0.9
5,771,593 - -0.9
5,771,593 - -1.0
5,771,593 - -1.3
5,771,593 - -0.6
5,771,593 - -2.7
5,771,593 - +0.5
5,771,593 - -1.2
5,771,593 - -2.4
5,771,597 - -3.2
5,771,620 + -0.1
5,771,620 + +0.0
5,771,620 + +0.1
5,771,620 + -0.2
5,771,620 + -0.1
5,771,620 + +1.6
5,771,620 + -1.2
5,771,620 + -0.2
5,771,621 - +0.0
5,771,621 - -2.8
5,771,621 - -2.6
5,771,621 - +0.7
5,771,621 - -1.3
5,771,621 - +0.0
5,771,621 - -1.8
5,771,621 - -1.5
5,771,621 - +0.1
5,771,621 - -0.5
5,771,621 - -1.4
5,771,621 - -1.0
5,771,621 - -1.2
5,771,621 - -1.2
5,771,621 - +0.1
5,771,621 - +2.3
5,771,628 - -0.7
5,771,628 - +3.3
5,771,628 - -3.1
5,771,628 - -1.9
5,771,628 - -2.0
5,771,664 - -2.2
5,771,664 - -2.8
5,771,670 + -2.9
5,771,831 + Pf6N2E2_5006 0.19 -1.6
5,771,831 + Pf6N2E2_5006 0.19 -1.6
5,771,831 + Pf6N2E2_5006 0.19 -3.3
5,771,832 - Pf6N2E2_5006 0.19 -3.1
5,771,832 - Pf6N2E2_5006 0.19 -2.8
5,771,832 - Pf6N2E2_5006 0.19 -2.0
5,771,853 + Pf6N2E2_5006 0.21 -3.0
5,771,854 - Pf6N2E2_5006 0.21 +0.8
5,771,854 - Pf6N2E2_5006 0.21 -1.6
5,771,991 + Pf6N2E2_5006 0.36 -3.0
5,771,991 + Pf6N2E2_5006 0.36 -1.6
5,771,996 + Pf6N2E2_5006 0.37 -1.5
5,771,997 - Pf6N2E2_5006 0.37 -3.1
5,772,159 + Pf6N2E2_5006 0.54 -3.8
5,772,159 + Pf6N2E2_5006 0.54 -3.0
5,772,160 - Pf6N2E2_5006 0.54 -1.8
5,772,160 - Pf6N2E2_5006 0.54 -2.7
5,772,160 - Pf6N2E2_5006 0.54 -2.7
5,772,176 + Pf6N2E2_5006 0.56 -3.1
5,772,176 + Pf6N2E2_5006 0.56 -3.8
5,772,177 - Pf6N2E2_5006 0.56 -2.6
5,772,323 + Pf6N2E2_5006 0.71 -0.9
5,772,378 + Pf6N2E2_5006 0.77 +0.1
5,772,594 - +0.7
5,772,601 + +0.6
5,772,602 - -0.5
5,772,602 - -0.4
5,772,700 - -1.2
5,772,922 + Pf6N2E2_5007 0.16 -0.6
5,772,923 - Pf6N2E2_5007 0.16 +0.7
5,772,958 - Pf6N2E2_5007 0.19 +0.7
5,772,976 + Pf6N2E2_5007 0.20 -0.1
5,772,977 - Pf6N2E2_5007 0.20 +0.4
5,772,994 + Pf6N2E2_5007 0.22 +0.5
5,772,994 + Pf6N2E2_5007 0.22 +2.0
5,772,994 + Pf6N2E2_5007 0.22 -0.6
5,772,994 + Pf6N2E2_5007 0.22 +0.6
5,772,994 + Pf6N2E2_5007 0.22 +0.1
5,772,994 + Pf6N2E2_5007 0.22 +0.6
5,772,995 - Pf6N2E2_5007 0.22 +0.0
5,773,111 + Pf6N2E2_5007 0.30 +1.2
5,773,112 - Pf6N2E2_5007 0.31 -0.1
5,773,177 + Pf6N2E2_5007 0.35 +0.3
5,773,250 - Pf6N2E2_5007 0.41 +1.2
5,773,250 - Pf6N2E2_5007 0.41 +2.5
5,773,336 + Pf6N2E2_5007 0.47 -2.5
5,773,336 + Pf6N2E2_5007 0.47 -0.3
5,773,336 + Pf6N2E2_5007 0.47 -1.6
5,773,336 + Pf6N2E2_5007 0.47 -0.1
5,773,336 + Pf6N2E2_5007 0.47 -1.2
5,773,337 - Pf6N2E2_5007 0.48 -1.2
5,773,337 - Pf6N2E2_5007 0.48 -0.7
5,773,337 - Pf6N2E2_5007 0.48 +1.5
5,773,514 + Pf6N2E2_5007 0.61 +0.4
5,773,514 + Pf6N2E2_5007 0.61 +0.7

Or see this region's nucleotide sequence