Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4809 and Pf6N2E2_4810 overlap by 4 nucleotides Pf6N2E2_4810 and Pf6N2E2_4811 are separated by 112 nucleotides Pf6N2E2_4811 and Pf6N2E2_4812 are separated by 172 nucleotides
Pf6N2E2_4809 - COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases, at 5,560,627 to 5,561,652
_4809
Pf6N2E2_4810 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 5,561,649 to 5,562,320
_4810
Pf6N2E2_4811 - DnaJ-like protein DjlA, at 5,562,433 to 5,563,089
_4811
Pf6N2E2_4812 - FIG00953890: hypothetical protein, at 5,563,262 to 5,564,254
_4812
Position (kb)
5561
5562
5563 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5560.769 kb on - strand, within Pf6N2E2_4809 at 5560.851 kb on + strand, within Pf6N2E2_4809 at 5560.851 kb on + strand, within Pf6N2E2_4809 at 5560.881 kb on + strand, within Pf6N2E2_4809 at 5560.954 kb on + strand, within Pf6N2E2_4809 at 5560.954 kb on + strand, within Pf6N2E2_4809 at 5560.964 kb on + strand, within Pf6N2E2_4809 at 5560.964 kb on + strand, within Pf6N2E2_4809 at 5560.964 kb on + strand, within Pf6N2E2_4809 at 5560.964 kb on + strand, within Pf6N2E2_4809 at 5560.965 kb on - strand, within Pf6N2E2_4809 at 5560.991 kb on + strand, within Pf6N2E2_4809 at 5560.991 kb on + strand at 5560.991 kb on + strand, within Pf6N2E2_4809 at 5560.992 kb on - strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.059 kb on + strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.060 kb on - strand, within Pf6N2E2_4809 at 5561.061 kb on - strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.107 kb on + strand, within Pf6N2E2_4809 at 5561.108 kb on - strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.227 kb on + strand, within Pf6N2E2_4809 at 5561.228 kb on + strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.228 kb on - strand, within Pf6N2E2_4809 at 5561.293 kb on + strand, within Pf6N2E2_4809 at 5561.294 kb on - strand, within Pf6N2E2_4809 at 5561.294 kb on - strand, within Pf6N2E2_4809 at 5561.294 kb on - strand, within Pf6N2E2_4809 at 5561.294 kb on - strand, within Pf6N2E2_4809 at 5561.308 kb on + strand, within Pf6N2E2_4809 at 5561.308 kb on + strand, within Pf6N2E2_4809 at 5561.308 kb on + strand, within Pf6N2E2_4809 at 5561.309 kb on - strand, within Pf6N2E2_4809 at 5561.309 kb on - strand, within Pf6N2E2_4809 at 5561.383 kb on + strand, within Pf6N2E2_4809 at 5561.384 kb on - strand, within Pf6N2E2_4809 at 5561.477 kb on + strand, within Pf6N2E2_4809 at 5561.477 kb on + strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.478 kb on - strand, within Pf6N2E2_4809 at 5561.530 kb on + strand, within Pf6N2E2_4809 at 5561.531 kb on - strand, within Pf6N2E2_4809 at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.560 kb on + strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.561 kb on - strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.562 kb on + strand at 5561.563 kb on - strand at 5561.563 kb on - strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.564 kb on + strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.565 kb on - strand at 5561.705 kb on + strand at 5561.706 kb on - strand at 5561.706 kb on - strand at 5561.754 kb on + strand, within Pf6N2E2_4810 at 5561.982 kb on + strand, within Pf6N2E2_4810 at 5561.983 kb on - strand, within Pf6N2E2_4810 at 5562.098 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.126 kb on + strand, within Pf6N2E2_4810 at 5562.127 kb on - strand, within Pf6N2E2_4810 at 5562.127 kb on - strand, within Pf6N2E2_4810 at 5562.127 kb on - strand, within Pf6N2E2_4810 at 5562.127 kb on - strand, within Pf6N2E2_4810 at 5562.127 kb on - strand, within Pf6N2E2_4810 at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.321 kb on + strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.322 kb on - strand at 5562.402 kb on - strand at 5562.404 kb on + strand at 5562.428 kb on + strand at 5562.659 kb on + strand, within Pf6N2E2_4811 at 5562.659 kb on + strand, within Pf6N2E2_4811 at 5562.659 kb on + strand, within Pf6N2E2_4811 at 5562.660 kb on - strand, within Pf6N2E2_4811 at 5562.660 kb on - strand, within Pf6N2E2_4811 at 5562.880 kb on + strand, within Pf6N2E2_4811 at 5562.880 kb on + strand, within Pf6N2E2_4811 at 5562.880 kb on + strand, within Pf6N2E2_4811 at 5562.881 kb on - strand, within Pf6N2E2_4811 at 5562.881 kb on - strand, within Pf6N2E2_4811 at 5563.158 kb on + strand at 5563.158 kb on + strand at 5563.158 kb on + strand at 5563.158 kb on + strand at 5563.158 kb on + strand at 5563.159 kb on - strand at 5563.159 kb on - strand at 5563.159 kb on - strand at 5563.263 kb on + strand at 5563.264 kb on - strand at 5563.264 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 5,560,769 - Pf6N2E2_4809 0.14 -1.6 5,560,851 + Pf6N2E2_4809 0.22 -1.5 5,560,851 + Pf6N2E2_4809 0.22 -4.0 5,560,881 + Pf6N2E2_4809 0.25 +0.3 5,560,954 + Pf6N2E2_4809 0.32 -2.0 5,560,954 + Pf6N2E2_4809 0.32 -1.3 5,560,964 + Pf6N2E2_4809 0.33 -0.7 5,560,964 + Pf6N2E2_4809 0.33 -1.6 5,560,964 + Pf6N2E2_4809 0.33 -1.7 5,560,964 + Pf6N2E2_4809 0.33 -1.7 5,560,965 - Pf6N2E2_4809 0.33 -2.1 5,560,991 + Pf6N2E2_4809 0.35 -2.2 5,560,991 + +2.1 5,560,991 + Pf6N2E2_4809 0.35 -0.1 5,560,992 - Pf6N2E2_4809 0.36 -1.3 5,561,059 + Pf6N2E2_4809 0.42 +0.6 5,561,059 + Pf6N2E2_4809 0.42 -2.0 5,561,059 + Pf6N2E2_4809 0.42 -1.8 5,561,059 + Pf6N2E2_4809 0.42 -1.6 5,561,059 + Pf6N2E2_4809 0.42 -0.7 5,561,059 + Pf6N2E2_4809 0.42 -2.0 5,561,059 + Pf6N2E2_4809 0.42 -1.6 5,561,059 + Pf6N2E2_4809 0.42 -0.7 5,561,059 + Pf6N2E2_4809 0.42 -0.8 5,561,059 + Pf6N2E2_4809 0.42 -3.0 5,561,060 - Pf6N2E2_4809 0.42 -2.6 5,561,060 - Pf6N2E2_4809 0.42 -1.5 5,561,060 - Pf6N2E2_4809 0.42 +0.5 5,561,060 - Pf6N2E2_4809 0.42 -2.5 5,561,060 - Pf6N2E2_4809 0.42 +0.6 5,561,060 - Pf6N2E2_4809 0.42 -2.4 5,561,060 - Pf6N2E2_4809 0.42 -1.5 5,561,061 - Pf6N2E2_4809 0.42 +1.8 5,561,107 + Pf6N2E2_4809 0.47 -0.7 5,561,107 + Pf6N2E2_4809 0.47 -2.2 5,561,107 + Pf6N2E2_4809 0.47 -2.2 5,561,107 + Pf6N2E2_4809 0.47 -1.5 5,561,107 + Pf6N2E2_4809 0.47 -3.5 5,561,107 + Pf6N2E2_4809 0.47 -3.1 5,561,108 - Pf6N2E2_4809 0.47 -3.2 5,561,227 + Pf6N2E2_4809 0.58 -1.3 5,561,227 + Pf6N2E2_4809 0.58 -1.2 5,561,227 + Pf6N2E2_4809 0.58 -1.6 5,561,227 + Pf6N2E2_4809 0.58 +0.2 5,561,227 + Pf6N2E2_4809 0.58 -0.9 5,561,227 + Pf6N2E2_4809 0.58 -1.7 5,561,227 + Pf6N2E2_4809 0.58 -3.0 5,561,227 + Pf6N2E2_4809 0.58 -3.6 5,561,227 + Pf6N2E2_4809 0.58 -1.4 5,561,228 + Pf6N2E2_4809 0.59 -1.6 5,561,228 - Pf6N2E2_4809 0.59 -2.1 5,561,228 - Pf6N2E2_4809 0.59 -1.5 5,561,228 - Pf6N2E2_4809 0.59 -3.4 5,561,228 - Pf6N2E2_4809 0.59 -1.5 5,561,228 - Pf6N2E2_4809 0.59 -0.6 5,561,228 - Pf6N2E2_4809 0.59 -0.2 5,561,228 - Pf6N2E2_4809 0.59 -2.8 5,561,228 - Pf6N2E2_4809 0.59 -2.5 5,561,228 - Pf6N2E2_4809 0.59 -1.0 5,561,293 + Pf6N2E2_4809 0.65 -3.2 5,561,294 - Pf6N2E2_4809 0.65 -2.5 5,561,294 - Pf6N2E2_4809 0.65 -0.6 5,561,294 - Pf6N2E2_4809 0.65 -0.7 5,561,294 - Pf6N2E2_4809 0.65 -2.4 5,561,308 + Pf6N2E2_4809 0.66 -2.5 5,561,308 + Pf6N2E2_4809 0.66 -1.4 5,561,308 + Pf6N2E2_4809 0.66 -1.2 5,561,309 - Pf6N2E2_4809 0.66 -2.6 5,561,309 - Pf6N2E2_4809 0.66 -2.3 5,561,383 + Pf6N2E2_4809 0.74 -2.3 5,561,384 - Pf6N2E2_4809 0.74 -1.3 5,561,477 + Pf6N2E2_4809 0.83 -1.0 5,561,477 + Pf6N2E2_4809 0.83 -1.5 5,561,478 - Pf6N2E2_4809 0.83 -2.4 5,561,478 - Pf6N2E2_4809 0.83 -2.1 5,561,478 - Pf6N2E2_4809 0.83 -2.4 5,561,478 - Pf6N2E2_4809 0.83 -2.4 5,561,478 - Pf6N2E2_4809 0.83 -1.4 5,561,478 - Pf6N2E2_4809 0.83 -1.6 5,561,530 + Pf6N2E2_4809 0.88 -0.9 5,561,531 - Pf6N2E2_4809 0.88 -2.7 5,561,560 + -0.6 5,561,560 + -0.0 5,561,560 + -1.5 5,561,560 + -2.1 5,561,560 + -2.8 5,561,560 + -3.2 5,561,560 + +0.1 5,561,560 + -1.2 5,561,560 + -2.1 5,561,560 + -1.7 5,561,560 + -0.9 5,561,560 + -2.4 5,561,560 + -0.4 5,561,561 - -3.2 5,561,561 - -2.2 5,561,561 - -0.7 5,561,561 - -2.8 5,561,561 - -1.0 5,561,561 - -3.5 5,561,561 - -0.6 5,561,561 - -3.0 5,561,561 - -1.0 5,561,562 + -0.9 5,561,562 + -1.6 5,561,562 + -1.3 5,561,562 + -1.6 5,561,562 + -1.3 5,561,562 + -2.7 5,561,562 + -1.4 5,561,562 + -2.0 5,561,562 + -0.7 5,561,563 - -3.6 5,561,563 - -2.4 5,561,564 + -3.0 5,561,564 + -0.6 5,561,564 + -0.4 5,561,564 + -0.7 5,561,564 + -2.4 5,561,564 + -1.5 5,561,564 + -1.0 5,561,564 + -1.8 5,561,564 + -1.0 5,561,564 + -3.4 5,561,564 + -0.2 5,561,564 + +0.4 5,561,564 + +0.4 5,561,564 + -2.0 5,561,564 + -1.7 5,561,565 - -0.4 5,561,565 - -0.9 5,561,565 - -0.8 5,561,565 - -1.6 5,561,565 - -1.7 5,561,565 - -2.0 5,561,565 - -2.8 5,561,565 - -2.7 5,561,565 - -1.6 5,561,565 - -1.0 5,561,565 - -1.5 5,561,565 - -3.2 5,561,705 + -0.5 5,561,706 - -2.1 5,561,706 - -0.8 5,561,754 + Pf6N2E2_4810 0.16 -1.0 5,561,982 + Pf6N2E2_4810 0.50 -1.3 5,561,983 - Pf6N2E2_4810 0.50 -2.1 5,562,098 + Pf6N2E2_4810 0.67 -2.7 5,562,126 + Pf6N2E2_4810 0.71 -2.9 5,562,126 + Pf6N2E2_4810 0.71 -2.4 5,562,126 + Pf6N2E2_4810 0.71 -1.6 5,562,126 + Pf6N2E2_4810 0.71 -1.4 5,562,126 + Pf6N2E2_4810 0.71 -2.2 5,562,126 + Pf6N2E2_4810 0.71 -0.7 5,562,126 + Pf6N2E2_4810 0.71 -1.7 5,562,127 - Pf6N2E2_4810 0.71 -0.9 5,562,127 - Pf6N2E2_4810 0.71 -1.7 5,562,127 - Pf6N2E2_4810 0.71 -2.9 5,562,127 - Pf6N2E2_4810 0.71 -1.6 5,562,127 - Pf6N2E2_4810 0.71 -2.6 5,562,321 + +0.1 5,562,321 + -2.9 5,562,321 + -0.1 5,562,321 + -1.3 5,562,321 + -0.6 5,562,321 + +1.1 5,562,321 + +1.1 5,562,321 + +0.1 5,562,321 + -0.9 5,562,322 - -0.9 5,562,322 - -2.7 5,562,322 - -0.9 5,562,322 - -1.0 5,562,322 - -1.2 5,562,322 - -1.6 5,562,322 - +0.4 5,562,322 - -0.6 5,562,402 - +0.2 5,562,404 + +0.6 5,562,428 + -0.6 5,562,659 + Pf6N2E2_4811 0.34 -2.6 5,562,659 + Pf6N2E2_4811 0.34 -2.8 5,562,659 + Pf6N2E2_4811 0.34 -2.1 5,562,660 - Pf6N2E2_4811 0.35 -1.4 5,562,660 - Pf6N2E2_4811 0.35 +0.9 5,562,880 + Pf6N2E2_4811 0.68 -0.7 5,562,880 + Pf6N2E2_4811 0.68 -2.2 5,562,880 + Pf6N2E2_4811 0.68 -1.5 5,562,881 - Pf6N2E2_4811 0.68 +0.3 5,562,881 - Pf6N2E2_4811 0.68 -0.3 5,563,158 + +0.6 5,563,158 + +0.4 5,563,158 + +1.0 5,563,158 + -0.9 5,563,158 + -0.6 5,563,159 - -1.3 5,563,159 - -1.7 5,563,159 - +0.7 5,563,263 + -0.5 5,563,264 - +0.7 5,563,264 - -0.4
Or see this region's nucleotide sequence