Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4791

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4790 and Pf6N2E2_4791 are separated by 127 nucleotidesPf6N2E2_4791 and Pf6N2E2_4792 are separated by 67 nucleotides Pf6N2E2_4790 - sensory box/GGDEF domain/EAL domain protein, at 5,535,177 to 5,538,920 _4790 Pf6N2E2_4791 - RNA polymerase sigma factor RpoD, at 5,539,048 to 5,540,895 _4791 Pf6N2E2_4792 - DNA primase (EC 2.7.7.-), at 5,540,963 to 5,542,921 _4792 Position (kb) 5539 5540 5541Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5538.078 kb on + strand, within Pf6N2E2_4790at 5538.112 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.234 kb on + strand, within Pf6N2E2_4790at 5538.235 kb on - strand, within Pf6N2E2_4790at 5538.235 kb on - strand, within Pf6N2E2_4790at 5538.235 kb on - strand, within Pf6N2E2_4790at 5538.298 kb on + strand, within Pf6N2E2_4790at 5538.298 kb on + strand, within Pf6N2E2_4790at 5538.298 kb on + strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.299 kb on - strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.466 kb on + strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.467 kb on - strand, within Pf6N2E2_4790at 5538.497 kb on - strand, within Pf6N2E2_4790at 5538.514 kb on + strand, within Pf6N2E2_4790at 5538.514 kb on + strand, within Pf6N2E2_4790at 5538.514 kb on + strand, within Pf6N2E2_4790at 5538.575 kb on + strandat 5538.575 kb on + strandat 5538.587 kb on - strandat 5538.587 kb on - strandat 5538.630 kb on + strandat 5538.631 kb on - strandat 5538.631 kb on - strandat 5538.727 kb on + strandat 5538.727 kb on + strandat 5538.727 kb on + strandat 5538.727 kb on + strandat 5538.727 kb on + strandat 5538.728 kb on - strandat 5538.749 kb on - strandat 5538.960 kb on - strandat 5538.960 kb on - strandat 5538.960 kb on - strandat 5538.988 kb on - strandat 5539.002 kb on + strandat 5539.002 kb on + strandat 5539.002 kb on + strandat 5539.003 kb on - strandat 5539.003 kb on - strandat 5539.012 kb on + strandat 5539.013 kb on - strandat 5539.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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5,538,078 + Pf6N2E2_4790 0.77 -2.2
5,538,112 + Pf6N2E2_4790 0.78 +0.1
5,538,234 + Pf6N2E2_4790 0.82 -2.3
5,538,234 + Pf6N2E2_4790 0.82 -0.3
5,538,234 + Pf6N2E2_4790 0.82 -1.5
5,538,234 + Pf6N2E2_4790 0.82 +1.9
5,538,234 + Pf6N2E2_4790 0.82 +0.1
5,538,234 + Pf6N2E2_4790 0.82 +1.3
5,538,235 - Pf6N2E2_4790 0.82 -0.1
5,538,235 - Pf6N2E2_4790 0.82 -1.5
5,538,235 - Pf6N2E2_4790 0.82 -1.9
5,538,298 + Pf6N2E2_4790 0.83 -1.9
5,538,298 + Pf6N2E2_4790 0.83 +0.7
5,538,298 + Pf6N2E2_4790 0.83 +0.2
5,538,299 - Pf6N2E2_4790 0.83 +0.6
5,538,299 - Pf6N2E2_4790 0.83 -1.9
5,538,299 - Pf6N2E2_4790 0.83 +0.4
5,538,299 - Pf6N2E2_4790 0.83 -1.5
5,538,299 - Pf6N2E2_4790 0.83 +0.1
5,538,299 - Pf6N2E2_4790 0.83 +0.6
5,538,299 - Pf6N2E2_4790 0.83 -0.3
5,538,299 - Pf6N2E2_4790 0.83 +1.1
5,538,466 + Pf6N2E2_4790 0.88 +0.5
5,538,466 + Pf6N2E2_4790 0.88 +0.2
5,538,466 + Pf6N2E2_4790 0.88 +0.0
5,538,466 + Pf6N2E2_4790 0.88 -0.9
5,538,466 + Pf6N2E2_4790 0.88 +0.3
5,538,466 + Pf6N2E2_4790 0.88 +0.8
5,538,466 + Pf6N2E2_4790 0.88 +0.3
5,538,466 + Pf6N2E2_4790 0.88 +0.4
5,538,466 + Pf6N2E2_4790 0.88 +1.1
5,538,466 + Pf6N2E2_4790 0.88 +0.5
5,538,466 + Pf6N2E2_4790 0.88 +0.9
5,538,466 + Pf6N2E2_4790 0.88 -2.6
5,538,466 + Pf6N2E2_4790 0.88 +0.3
5,538,466 + Pf6N2E2_4790 0.88 -0.9
5,538,466 + Pf6N2E2_4790 0.88 -0.1
5,538,466 + Pf6N2E2_4790 0.88 +0.5
5,538,466 + Pf6N2E2_4790 0.88 +1.3
5,538,466 + Pf6N2E2_4790 0.88 -0.6
5,538,467 - Pf6N2E2_4790 0.88 -0.3
5,538,467 - Pf6N2E2_4790 0.88 +1.8
5,538,467 - Pf6N2E2_4790 0.88 +1.0
5,538,467 - Pf6N2E2_4790 0.88 +1.0
5,538,467 - Pf6N2E2_4790 0.88 +1.3
5,538,467 - Pf6N2E2_4790 0.88 -0.2
5,538,467 - Pf6N2E2_4790 0.88 -0.3
5,538,467 - Pf6N2E2_4790 0.88 +0.5
5,538,467 - Pf6N2E2_4790 0.88 -0.1
5,538,467 - Pf6N2E2_4790 0.88 +0.4
5,538,467 - Pf6N2E2_4790 0.88 -0.3
5,538,497 - Pf6N2E2_4790 0.89 -3.2
5,538,514 + Pf6N2E2_4790 0.89 -2.7
5,538,514 + Pf6N2E2_4790 0.89 -1.2
5,538,514 + Pf6N2E2_4790 0.89 -1.2
5,538,575 + -0.2
5,538,575 + +0.8
5,538,587 - +0.8
5,538,587 - +0.1
5,538,630 + +0.6
5,538,631 - -0.2
5,538,631 - +0.1
5,538,727 + -0.6
5,538,727 + +1.0
5,538,727 + -0.5
5,538,727 + +0.6
5,538,727 + -0.1
5,538,728 - -0.4
5,538,749 - +0.5
5,538,960 - +0.4
5,538,960 - +0.9
5,538,960 - -0.1
5,538,988 - -0.1
5,539,002 + +1.1
5,539,002 + -0.1
5,539,002 + -1.4
5,539,003 - +1.0
5,539,003 - +0.1
5,539,012 + +0.9
5,539,013 - -2.2
5,539,013 - +2.2

Or see this region's nucleotide sequence