Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4678

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4677 and Pf6N2E2_4678 overlap by 9 nucleotidesPf6N2E2_4678 and Pf6N2E2_4679 overlap by 19 nucleotides Pf6N2E2_4677 - Choline dehydrogenase (EC 1.1.99.1), at 5,410,297 to 5,412,000 _4677 Pf6N2E2_4678 - hypothetical protein, at 5,411,992 to 5,412,231 _4678 Pf6N2E2_4679 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 5,412,213 to 5,413,685 _4679 Position (kb) 5411 5412 5413Strain fitness (log2 ratio) -2 -1 0 1 2at 5411.033 kb on + strand, within Pf6N2E2_4677at 5411.052 kb on - strand, within Pf6N2E2_4677at 5411.078 kb on + strand, within Pf6N2E2_4677at 5411.078 kb on + strand, within Pf6N2E2_4677at 5411.079 kb on - strand, within Pf6N2E2_4677at 5411.079 kb on - strand, within Pf6N2E2_4677at 5411.079 kb on - strand, within Pf6N2E2_4677at 5411.087 kb on + strand, within Pf6N2E2_4677at 5411.087 kb on + strand, within Pf6N2E2_4677at 5411.087 kb on + strand, within Pf6N2E2_4677at 5411.087 kb on + strand, within Pf6N2E2_4677at 5411.088 kb on - strand, within Pf6N2E2_4677at 5411.088 kb on - strand, within Pf6N2E2_4677at 5411.384 kb on + strand, within Pf6N2E2_4677at 5411.385 kb on - strand, within Pf6N2E2_4677at 5411.497 kb on + strand, within Pf6N2E2_4677at 5411.498 kb on - strand, within Pf6N2E2_4677at 5411.625 kb on - strand, within Pf6N2E2_4677at 5411.625 kb on - strand, within Pf6N2E2_4677at 5411.642 kb on + strand, within Pf6N2E2_4677at 5411.642 kb on + strand, within Pf6N2E2_4677at 5411.643 kb on - strand, within Pf6N2E2_4677at 5411.643 kb on - strand, within Pf6N2E2_4677at 5411.643 kb on - strand, within Pf6N2E2_4677at 5411.684 kb on + strand, within Pf6N2E2_4677at 5411.685 kb on - strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.708 kb on + strand, within Pf6N2E2_4677at 5411.709 kb on - strand, within Pf6N2E2_4677at 5411.709 kb on - strand, within Pf6N2E2_4677at 5411.709 kb on - strand, within Pf6N2E2_4677at 5411.709 kb on - strand, within Pf6N2E2_4677at 5411.709 kb on - strand, within Pf6N2E2_4677at 5411.805 kb on - strand, within Pf6N2E2_4677at 5411.981 kb on + strandat 5411.981 kb on + strandat 5411.982 kb on - strandat 5411.989 kb on + strandat 5411.989 kb on + strandat 5411.990 kb on - strandat 5412.099 kb on - strand, within Pf6N2E2_4678at 5412.249 kb on + strandat 5412.319 kb on + strandat 5412.375 kb on - strand, within Pf6N2E2_4679at 5412.493 kb on + strand, within Pf6N2E2_4679at 5412.494 kb on - strand, within Pf6N2E2_4679at 5412.668 kb on - strand, within Pf6N2E2_4679at 5412.668 kb on - strand, within Pf6N2E2_4679at 5412.668 kb on - strand, within Pf6N2E2_4679at 5412.847 kb on + strand, within Pf6N2E2_4679at 5412.847 kb on + strand, within Pf6N2E2_4679at 5412.847 kb on + strand, within Pf6N2E2_4679at 5412.848 kb on - strand, within Pf6N2E2_4679at 5412.848 kb on - strand, within Pf6N2E2_4679at 5413.111 kb on + strand, within Pf6N2E2_4679at 5413.112 kb on - strand, within Pf6N2E2_4679at 5413.112 kb on - strand, within Pf6N2E2_4679at 5413.112 kb on - strand, within Pf6N2E2_4679

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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5,411,033 + Pf6N2E2_4677 0.43 +0.8
5,411,052 - Pf6N2E2_4677 0.44 +0.5
5,411,078 + Pf6N2E2_4677 0.46 -0.2
5,411,078 + Pf6N2E2_4677 0.46 +0.6
5,411,079 - Pf6N2E2_4677 0.46 -1.7
5,411,079 - Pf6N2E2_4677 0.46 +0.4
5,411,079 - Pf6N2E2_4677 0.46 -1.3
5,411,087 + Pf6N2E2_4677 0.46 -0.4
5,411,087 + Pf6N2E2_4677 0.46 -0.9
5,411,087 + Pf6N2E2_4677 0.46 -1.1
5,411,087 + Pf6N2E2_4677 0.46 -1.8
5,411,088 - Pf6N2E2_4677 0.46 -2.1
5,411,088 - Pf6N2E2_4677 0.46 -0.4
5,411,384 + Pf6N2E2_4677 0.64 -1.4
5,411,385 - Pf6N2E2_4677 0.64 +0.1
5,411,497 + Pf6N2E2_4677 0.70 -2.6
5,411,498 - Pf6N2E2_4677 0.70 -0.3
5,411,625 - Pf6N2E2_4677 0.78 +0.7
5,411,625 - Pf6N2E2_4677 0.78 -0.6
5,411,642 + Pf6N2E2_4677 0.79 -0.6
5,411,642 + Pf6N2E2_4677 0.79 -1.1
5,411,643 - Pf6N2E2_4677 0.79 -1.9
5,411,643 - Pf6N2E2_4677 0.79 +0.3
5,411,643 - Pf6N2E2_4677 0.79 -0.1
5,411,684 + Pf6N2E2_4677 0.81 -1.7
5,411,685 - Pf6N2E2_4677 0.81 -2.2
5,411,708 + Pf6N2E2_4677 0.83 -0.5
5,411,708 + Pf6N2E2_4677 0.83 +0.3
5,411,708 + Pf6N2E2_4677 0.83 -1.9
5,411,708 + Pf6N2E2_4677 0.83 +0.2
5,411,708 + Pf6N2E2_4677 0.83 -0.0
5,411,708 + Pf6N2E2_4677 0.83 -1.5
5,411,708 + Pf6N2E2_4677 0.83 -0.2
5,411,708 + Pf6N2E2_4677 0.83 -0.3
5,411,709 - Pf6N2E2_4677 0.83 +1.4
5,411,709 - Pf6N2E2_4677 0.83 +0.1
5,411,709 - Pf6N2E2_4677 0.83 +1.6
5,411,709 - Pf6N2E2_4677 0.83 -0.9
5,411,709 - Pf6N2E2_4677 0.83 +1.9
5,411,805 - Pf6N2E2_4677 0.88 -0.8
5,411,981 + -1.9
5,411,981 + -0.4
5,411,982 - -0.4
5,411,989 + -1.5
5,411,989 + -1.0
5,411,990 - +0.4
5,412,099 - Pf6N2E2_4678 0.45 -2.3
5,412,249 + -0.3
5,412,319 + -1.6
5,412,375 - Pf6N2E2_4679 0.11 +0.9
5,412,493 + Pf6N2E2_4679 0.19 +1.7
5,412,494 - Pf6N2E2_4679 0.19 -0.8
5,412,668 - Pf6N2E2_4679 0.31 +0.5
5,412,668 - Pf6N2E2_4679 0.31 -1.4
5,412,668 - Pf6N2E2_4679 0.31 -2.6
5,412,847 + Pf6N2E2_4679 0.43 -0.4
5,412,847 + Pf6N2E2_4679 0.43 -0.7
5,412,847 + Pf6N2E2_4679 0.43 -0.8
5,412,848 - Pf6N2E2_4679 0.43 -1.2
5,412,848 - Pf6N2E2_4679 0.43 +0.5
5,413,111 + Pf6N2E2_4679 0.61 -1.6
5,413,112 - Pf6N2E2_4679 0.61 -2.7
5,413,112 - Pf6N2E2_4679 0.61 -0.8
5,413,112 - Pf6N2E2_4679 0.61 +1.6

Or see this region's nucleotide sequence