Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4470

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4469 and Pf6N2E2_4470 are separated by 117 nucleotidesPf6N2E2_4470 and Pf6N2E2_4471 are separated by 67 nucleotides Pf6N2E2_4469 - Quinone oxidoreductase (EC 1.6.5.5), at 5,201,818 to 5,202,795 _4469 Pf6N2E2_4470 - Flagellar biosynthesis protein FliL, at 5,202,913 to 5,203,362 _4470 Pf6N2E2_4471 - ABC-type multidrug transport system, permease component, at 5,203,430 to 5,204,548 _4471 Position (kb) 5202 5203 5204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5202.159 kb on - strand, within Pf6N2E2_4469at 5202.159 kb on - strand, within Pf6N2E2_4469at 5202.224 kb on + strand, within Pf6N2E2_4469at 5202.225 kb on - strand, within Pf6N2E2_4469at 5202.225 kb on - strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.425 kb on + strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.426 kb on - strand, within Pf6N2E2_4469at 5202.488 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.644 kb on + strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.645 kb on - strand, within Pf6N2E2_4469at 5202.802 kb on + strandat 5202.803 kb on - strandat 5202.826 kb on + strandat 5202.826 kb on + strandat 5202.827 kb on - strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.832 kb on + strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.833 kb on - strandat 5202.883 kb on + strandat 5202.883 kb on + strandat 5202.884 kb on - strandat 5202.884 kb on - strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.885 kb on + strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.886 kb on - strandat 5202.913 kb on - strandat 5203.044 kb on + strand, within Pf6N2E2_4470at 5203.045 kb on - strand, within Pf6N2E2_4470at 5203.045 kb on - strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.048 kb on + strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.049 kb on - strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.081 kb on + strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.082 kb on - strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.114 kb on + strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.115 kb on - strand, within Pf6N2E2_4470at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.569 kb on + strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.570 kb on - strand, within Pf6N2E2_4471at 5203.633 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.752 kb on + strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5203.753 kb on - strand, within Pf6N2E2_4471at 5204.044 kb on + strand, within Pf6N2E2_4471at 5204.045 kb on - strand, within Pf6N2E2_4471at 5204.109 kb on + strand, within Pf6N2E2_4471at 5204.109 kb on + strand, within Pf6N2E2_4471at 5204.109 kb on + strand, within Pf6N2E2_4471at 5204.109 kb on + strand, within Pf6N2E2_4471at 5204.109 kb on + strand, within Pf6N2E2_4471at 5204.110 kb on - strand, within Pf6N2E2_4471

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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5,202,159 - Pf6N2E2_4469 0.35 +2.3
5,202,159 - Pf6N2E2_4469 0.35 +1.6
5,202,224 + Pf6N2E2_4469 0.42 +0.7
5,202,225 - Pf6N2E2_4469 0.42 -1.2
5,202,225 - Pf6N2E2_4469 0.42 +0.1
5,202,425 + Pf6N2E2_4469 0.62 -2.0
5,202,425 + Pf6N2E2_4469 0.62 -2.4
5,202,425 + Pf6N2E2_4469 0.62 +0.7
5,202,425 + Pf6N2E2_4469 0.62 -0.1
5,202,425 + Pf6N2E2_4469 0.62 +1.6
5,202,426 - Pf6N2E2_4469 0.62 +2.8
5,202,426 - Pf6N2E2_4469 0.62 -0.6
5,202,426 - Pf6N2E2_4469 0.62 +0.3
5,202,426 - Pf6N2E2_4469 0.62 +2.1
5,202,426 - Pf6N2E2_4469 0.62 -0.8
5,202,426 - Pf6N2E2_4469 0.62 -2.1
5,202,426 - Pf6N2E2_4469 0.62 +0.4
5,202,426 - Pf6N2E2_4469 0.62 -0.3
5,202,488 + Pf6N2E2_4469 0.69 -0.3
5,202,644 + Pf6N2E2_4469 0.84 -0.6
5,202,644 + Pf6N2E2_4469 0.84 -0.5
5,202,644 + Pf6N2E2_4469 0.84 -0.7
5,202,644 + Pf6N2E2_4469 0.84 -1.0
5,202,645 - Pf6N2E2_4469 0.85 -0.8
5,202,645 - Pf6N2E2_4469 0.85 -1.5
5,202,645 - Pf6N2E2_4469 0.85 +1.8
5,202,802 + -0.9
5,202,803 - -0.7
5,202,826 + -1.4
5,202,826 + -0.9
5,202,827 - +0.5
5,202,832 + -1.3
5,202,832 + +1.9
5,202,832 + +0.2
5,202,832 + +0.1
5,202,832 + -0.6
5,202,832 + +0.1
5,202,833 - -0.5
5,202,833 - -2.3
5,202,833 - -0.9
5,202,833 - +0.4
5,202,833 - +0.1
5,202,833 - -0.3
5,202,833 - +0.5
5,202,833 - +1.2
5,202,883 + -0.1
5,202,883 + -0.1
5,202,884 - -0.5
5,202,884 - -0.6
5,202,885 + -0.1
5,202,885 + +0.4
5,202,885 + +1.0
5,202,885 + -1.2
5,202,886 - +0.3
5,202,886 - +0.1
5,202,886 - -0.3
5,202,886 - -0.6
5,202,886 - -0.9
5,202,913 - -0.3
5,203,044 + Pf6N2E2_4470 0.29 -0.5
5,203,045 - Pf6N2E2_4470 0.29 +1.0
5,203,045 - Pf6N2E2_4470 0.29 +0.4
5,203,048 + Pf6N2E2_4470 0.30 +0.2
5,203,048 + Pf6N2E2_4470 0.30 +0.7
5,203,048 + Pf6N2E2_4470 0.30 +1.5
5,203,048 + Pf6N2E2_4470 0.30 +0.5
5,203,048 + Pf6N2E2_4470 0.30 -0.2
5,203,048 + Pf6N2E2_4470 0.30 +0.6
5,203,048 + Pf6N2E2_4470 0.30 -0.4
5,203,048 + Pf6N2E2_4470 0.30 -0.5
5,203,048 + Pf6N2E2_4470 0.30 +0.6
5,203,048 + Pf6N2E2_4470 0.30 -0.1
5,203,048 + Pf6N2E2_4470 0.30 +1.5
5,203,049 - Pf6N2E2_4470 0.30 +0.9
5,203,049 - Pf6N2E2_4470 0.30 -0.1
5,203,049 - Pf6N2E2_4470 0.30 +1.3
5,203,049 - Pf6N2E2_4470 0.30 +1.3
5,203,049 - Pf6N2E2_4470 0.30 +1.6
5,203,049 - Pf6N2E2_4470 0.30 +0.8
5,203,049 - Pf6N2E2_4470 0.30 +1.5
5,203,049 - Pf6N2E2_4470 0.30 +0.7
5,203,049 - Pf6N2E2_4470 0.30 -1.5
5,203,049 - Pf6N2E2_4470 0.30 +0.7
5,203,081 + Pf6N2E2_4470 0.37 +0.9
5,203,081 + Pf6N2E2_4470 0.37 +0.6
5,203,081 + Pf6N2E2_4470 0.37 -0.2
5,203,081 + Pf6N2E2_4470 0.37 +1.7
5,203,081 + Pf6N2E2_4470 0.37 +2.2
5,203,082 - Pf6N2E2_4470 0.38 +2.1
5,203,082 - Pf6N2E2_4470 0.38 -0.9
5,203,082 - Pf6N2E2_4470 0.38 +0.2
5,203,082 - Pf6N2E2_4470 0.38 -2.2
5,203,114 + Pf6N2E2_4470 0.45 -1.5
5,203,114 + Pf6N2E2_4470 0.45 +3.0
5,203,114 + Pf6N2E2_4470 0.45 -0.8
5,203,115 - Pf6N2E2_4470 0.45 +0.8
5,203,115 - Pf6N2E2_4470 0.45 +2.6
5,203,115 - Pf6N2E2_4470 0.45 -2.8
5,203,115 - Pf6N2E2_4470 0.45 -0.4
5,203,115 - Pf6N2E2_4470 0.45 +3.2
5,203,115 - Pf6N2E2_4470 0.45 +0.7
5,203,569 + Pf6N2E2_4471 0.12 -0.7
5,203,569 + Pf6N2E2_4471 0.12 -1.2
5,203,569 + Pf6N2E2_4471 0.12 -0.0
5,203,569 + Pf6N2E2_4471 0.12 +0.9
5,203,569 + Pf6N2E2_4471 0.12 +0.1
5,203,570 - Pf6N2E2_4471 0.13 +0.7
5,203,570 - Pf6N2E2_4471 0.13 -0.5
5,203,570 - Pf6N2E2_4471 0.13 -0.2
5,203,570 - Pf6N2E2_4471 0.13 -0.7
5,203,570 - Pf6N2E2_4471 0.13 +0.3
5,203,570 - Pf6N2E2_4471 0.13 +0.3
5,203,570 - Pf6N2E2_4471 0.13 -0.5
5,203,570 - Pf6N2E2_4471 0.13 -1.5
5,203,570 - Pf6N2E2_4471 0.13 +0.2
5,203,633 + Pf6N2E2_4471 0.18 -0.3
5,203,752 + Pf6N2E2_4471 0.29 -2.7
5,203,752 + Pf6N2E2_4471 0.29 -1.4
5,203,752 + Pf6N2E2_4471 0.29 -1.7
5,203,752 + Pf6N2E2_4471 0.29 +1.4
5,203,752 + Pf6N2E2_4471 0.29 -1.3
5,203,753 - Pf6N2E2_4471 0.29 +0.1
5,203,753 - Pf6N2E2_4471 0.29 +0.1
5,203,753 - Pf6N2E2_4471 0.29 +1.4
5,203,753 - Pf6N2E2_4471 0.29 -0.5
5,203,753 - Pf6N2E2_4471 0.29 -0.6
5,203,753 - Pf6N2E2_4471 0.29 +0.4
5,204,044 + Pf6N2E2_4471 0.55 +0.5
5,204,045 - Pf6N2E2_4471 0.55 +1.2
5,204,109 + Pf6N2E2_4471 0.61 -1.2
5,204,109 + Pf6N2E2_4471 0.61 -0.0
5,204,109 + Pf6N2E2_4471 0.61 -1.0
5,204,109 + Pf6N2E2_4471 0.61 -2.5
5,204,109 + Pf6N2E2_4471 0.61 +0.6
5,204,110 - Pf6N2E2_4471 0.61 +1.8

Or see this region's nucleotide sequence