Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4181

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4180 and Pf6N2E2_4181 are separated by 491 nucleotidesPf6N2E2_4181 and Pf6N2E2_4182 are separated by 33 nucleotidesPf6N2E2_4182 and Pf6N2E2_4183 are separated by 115 nucleotides Pf6N2E2_4180 - FIG00955126: hypothetical protein, at 4,864,499 to 4,865,623 _4180 Pf6N2E2_4181 - Organic hydroperoxide resistance protein, at 4,866,115 to 4,866,534 _4181 Pf6N2E2_4182 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,866,568 to 4,866,936 _4182 Pf6N2E2_4183 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,867,052 to 4,867,840 _4183 Position (kb) 4866 4867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4865.210 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.221 kb on + strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.222 kb on - strand, within Pf6N2E2_4180at 4865.291 kb on + strand, within Pf6N2E2_4180at 4865.291 kb on + strand, within Pf6N2E2_4180at 4865.291 kb on + strand, within Pf6N2E2_4180at 4865.291 kb on + strand, within Pf6N2E2_4180at 4865.291 kb on + strand, within Pf6N2E2_4180at 4865.292 kb on - strand, within Pf6N2E2_4180at 4865.292 kb on - strand, within Pf6N2E2_4180at 4865.292 kb on - strand, within Pf6N2E2_4180at 4865.292 kb on - strand, within Pf6N2E2_4180at 4865.459 kb on - strand, within Pf6N2E2_4180at 4865.496 kb on + strand, within Pf6N2E2_4180at 4865.496 kb on + strand, within Pf6N2E2_4180at 4865.496 kb on + strand, within Pf6N2E2_4180at 4865.533 kb on + strandat 4865.533 kb on + strandat 4865.534 kb on - strandat 4865.534 kb on - strandat 4865.536 kb on + strandat 4865.536 kb on + strandat 4865.536 kb on + strandat 4865.536 kb on + strandat 4865.537 kb on - strandat 4865.537 kb on - strandat 4865.537 kb on - strandat 4865.537 kb on - strandat 4865.602 kb on + strandat 4865.681 kb on - strandat 4865.833 kb on - strandat 4865.833 kb on - strandat 4865.833 kb on - strandat 4866.069 kb on + strandat 4866.102 kb on + strandat 4866.103 kb on - strandat 4866.103 kb on - strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.127 kb on + strandat 4866.128 kb on - strandat 4866.274 kb on + strand, within Pf6N2E2_4181at 4866.532 kb on + strandat 4866.532 kb on + strandat 4866.533 kb on - strandat 4866.552 kb on + strandat 4866.553 kb on - strandat 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.651 kb on + strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.652 kb on - strand, within Pf6N2E2_4182at 4866.890 kb on + strand, within Pf6N2E2_4182at 4866.891 kb on - strand, within Pf6N2E2_4182at 4867.005 kb on + strandat 4867.005 kb on + strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.006 kb on - strandat 4867.053 kb on + strandat 4867.053 kb on + strandat 4867.131 kb on + strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.132 kb on - strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.505 kb on + strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183at 4867.506 kb on - strand, within Pf6N2E2_4183

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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4,865,210 + Pf6N2E2_4180 0.63 +1.8
4,865,221 + Pf6N2E2_4180 0.64 -0.5
4,865,221 + Pf6N2E2_4180 0.64 +0.8
4,865,221 + Pf6N2E2_4180 0.64 +1.3
4,865,221 + Pf6N2E2_4180 0.64 -0.4
4,865,221 + Pf6N2E2_4180 0.64 +0.2
4,865,221 + Pf6N2E2_4180 0.64 +0.9
4,865,221 + Pf6N2E2_4180 0.64 -0.2
4,865,221 + Pf6N2E2_4180 0.64 +0.1
4,865,221 + Pf6N2E2_4180 0.64 +1.9
4,865,222 - Pf6N2E2_4180 0.64 +0.8
4,865,222 - Pf6N2E2_4180 0.64 +1.3
4,865,222 - Pf6N2E2_4180 0.64 +0.4
4,865,222 - Pf6N2E2_4180 0.64 -0.4
4,865,222 - Pf6N2E2_4180 0.64 -1.0
4,865,222 - Pf6N2E2_4180 0.64 +1.1
4,865,222 - Pf6N2E2_4180 0.64 +1.0
4,865,291 + Pf6N2E2_4180 0.70 -0.1
4,865,291 + Pf6N2E2_4180 0.70 +0.1
4,865,291 + Pf6N2E2_4180 0.70 +0.6
4,865,291 + Pf6N2E2_4180 0.70 +2.1
4,865,291 + Pf6N2E2_4180 0.70 +3.1
4,865,292 - Pf6N2E2_4180 0.70 +3.0
4,865,292 - Pf6N2E2_4180 0.70 +0.5
4,865,292 - Pf6N2E2_4180 0.70 +0.7
4,865,292 - Pf6N2E2_4180 0.70 +1.0
4,865,459 - Pf6N2E2_4180 0.85 -1.0
4,865,496 + Pf6N2E2_4180 0.89 +0.2
4,865,496 + Pf6N2E2_4180 0.89 +0.6
4,865,496 + Pf6N2E2_4180 0.89 +1.5
4,865,533 + +0.4
4,865,533 + +0.9
4,865,534 - +1.1
4,865,534 - +1.3
4,865,536 + +0.3
4,865,536 + +1.5
4,865,536 + -0.2
4,865,536 + -0.2
4,865,537 - -0.1
4,865,537 - +0.5
4,865,537 - +1.6
4,865,537 - +1.9
4,865,602 + +0.9
4,865,681 - -0.7
4,865,833 - -0.6
4,865,833 - +0.3
4,865,833 - -1.3
4,866,069 + -0.6
4,866,102 + -2.9
4,866,103 - -0.9
4,866,103 - +1.6
4,866,127 + -2.0
4,866,127 + -1.0
4,866,127 + +0.1
4,866,127 + -2.8
4,866,128 - +2.3
4,866,274 + Pf6N2E2_4181 0.38 -3.1
4,866,532 + -2.8
4,866,532 + -2.7
4,866,533 - +1.5
4,866,552 + -0.4
4,866,553 - +1.3
4,866,651 + Pf6N2E2_4182 0.22 -2.0
4,866,651 + Pf6N2E2_4182 0.22 -0.5
4,866,651 + Pf6N2E2_4182 0.22 +2.5
4,866,651 + Pf6N2E2_4182 0.22 +0.1
4,866,651 + Pf6N2E2_4182 0.22 +1.3
4,866,651 + Pf6N2E2_4182 0.22 -0.7
4,866,652 - Pf6N2E2_4182 0.23 +0.8
4,866,652 - Pf6N2E2_4182 0.23 +0.8
4,866,652 - Pf6N2E2_4182 0.23 +0.2
4,866,652 - Pf6N2E2_4182 0.23 +0.2
4,866,890 + Pf6N2E2_4182 0.87 -0.3
4,866,891 - Pf6N2E2_4182 0.88 -1.0
4,867,005 + -2.0
4,867,005 + +0.2
4,867,006 - -0.4
4,867,006 - +1.5
4,867,006 - +1.3
4,867,006 - +0.9
4,867,053 + +0.6
4,867,053 + +1.6
4,867,131 + Pf6N2E2_4183 0.10 +0.2
4,867,132 - Pf6N2E2_4183 0.10 +1.4
4,867,132 - Pf6N2E2_4183 0.10 -2.7
4,867,132 - Pf6N2E2_4183 0.10 +1.0
4,867,132 - Pf6N2E2_4183 0.10 -0.6
4,867,132 - Pf6N2E2_4183 0.10 -0.1
4,867,132 - Pf6N2E2_4183 0.10 -2.2
4,867,505 + Pf6N2E2_4183 0.57 -0.1
4,867,505 + Pf6N2E2_4183 0.57 +0.3
4,867,505 + Pf6N2E2_4183 0.57 -0.2
4,867,505 + Pf6N2E2_4183 0.57 -1.4
4,867,505 + Pf6N2E2_4183 0.57 -0.7
4,867,505 + Pf6N2E2_4183 0.57 +1.9
4,867,505 + Pf6N2E2_4183 0.57 +2.2
4,867,505 + Pf6N2E2_4183 0.57 -0.5
4,867,505 + Pf6N2E2_4183 0.57 -0.2
4,867,505 + Pf6N2E2_4183 0.57 -0.3
4,867,505 + Pf6N2E2_4183 0.57 +0.3
4,867,506 - Pf6N2E2_4183 0.58 +0.1
4,867,506 - Pf6N2E2_4183 0.58 +1.0
4,867,506 - Pf6N2E2_4183 0.58 +1.0
4,867,506 - Pf6N2E2_4183 0.58 -0.9
4,867,506 - Pf6N2E2_4183 0.58 +1.2
4,867,506 - Pf6N2E2_4183 0.58 -1.4
4,867,506 - Pf6N2E2_4183 0.58 -2.2
4,867,506 - Pf6N2E2_4183 0.58 +1.4

Or see this region's nucleotide sequence