Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4180 and Pf6N2E2_4181 are separated by 491 nucleotides Pf6N2E2_4181 and Pf6N2E2_4182 are separated by 33 nucleotides Pf6N2E2_4182 and Pf6N2E2_4183 are separated by 115 nucleotides
Pf6N2E2_4180 - FIG00955126: hypothetical protein, at 4,864,499 to 4,865,623
_4180
Pf6N2E2_4181 - Organic hydroperoxide resistance protein, at 4,866,115 to 4,866,534
_4181
Pf6N2E2_4182 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,866,568 to 4,866,936
_4182
Pf6N2E2_4183 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,867,052 to 4,867,840
_4183
Position (kb)
4866
4867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4865.210 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.221 kb on + strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.222 kb on - strand, within Pf6N2E2_4180 at 4865.291 kb on + strand, within Pf6N2E2_4180 at 4865.291 kb on + strand, within Pf6N2E2_4180 at 4865.291 kb on + strand, within Pf6N2E2_4180 at 4865.291 kb on + strand, within Pf6N2E2_4180 at 4865.291 kb on + strand, within Pf6N2E2_4180 at 4865.292 kb on - strand, within Pf6N2E2_4180 at 4865.292 kb on - strand, within Pf6N2E2_4180 at 4865.292 kb on - strand, within Pf6N2E2_4180 at 4865.292 kb on - strand, within Pf6N2E2_4180 at 4865.459 kb on - strand, within Pf6N2E2_4180 at 4865.496 kb on + strand, within Pf6N2E2_4180 at 4865.496 kb on + strand, within Pf6N2E2_4180 at 4865.496 kb on + strand, within Pf6N2E2_4180 at 4865.533 kb on + strand at 4865.533 kb on + strand at 4865.534 kb on - strand at 4865.534 kb on - strand at 4865.536 kb on + strand at 4865.536 kb on + strand at 4865.536 kb on + strand at 4865.536 kb on + strand at 4865.537 kb on - strand at 4865.537 kb on - strand at 4865.537 kb on - strand at 4865.537 kb on - strand at 4865.602 kb on + strand at 4865.681 kb on - strand at 4865.833 kb on - strand at 4865.833 kb on - strand at 4865.833 kb on - strand at 4866.069 kb on + strand at 4866.102 kb on + strand at 4866.103 kb on - strand at 4866.103 kb on - strand at 4866.127 kb on + strand at 4866.127 kb on + strand at 4866.127 kb on + strand at 4866.127 kb on + strand at 4866.128 kb on - strand at 4866.274 kb on + strand, within Pf6N2E2_4181 at 4866.532 kb on + strand at 4866.532 kb on + strand at 4866.533 kb on - strand at 4866.552 kb on + strand at 4866.553 kb on - strand at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.651 kb on + strand, within Pf6N2E2_4182 at 4866.652 kb on - strand, within Pf6N2E2_4182 at 4866.652 kb on - strand, within Pf6N2E2_4182 at 4866.652 kb on - strand, within Pf6N2E2_4182 at 4866.652 kb on - strand, within Pf6N2E2_4182 at 4866.890 kb on + strand, within Pf6N2E2_4182 at 4866.891 kb on - strand, within Pf6N2E2_4182 at 4867.005 kb on + strand at 4867.005 kb on + strand at 4867.006 kb on - strand at 4867.006 kb on - strand at 4867.006 kb on - strand at 4867.006 kb on - strand at 4867.053 kb on + strand at 4867.053 kb on + strand at 4867.131 kb on + strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.132 kb on - strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.505 kb on + strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183 at 4867.506 kb on - strand, within Pf6N2E2_4183
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 4,865,210 + Pf6N2E2_4180 0.63 +1.8 4,865,221 + Pf6N2E2_4180 0.64 -0.5 4,865,221 + Pf6N2E2_4180 0.64 +0.8 4,865,221 + Pf6N2E2_4180 0.64 +1.3 4,865,221 + Pf6N2E2_4180 0.64 -0.4 4,865,221 + Pf6N2E2_4180 0.64 +0.2 4,865,221 + Pf6N2E2_4180 0.64 +0.9 4,865,221 + Pf6N2E2_4180 0.64 -0.2 4,865,221 + Pf6N2E2_4180 0.64 +0.1 4,865,221 + Pf6N2E2_4180 0.64 +1.9 4,865,222 - Pf6N2E2_4180 0.64 +0.8 4,865,222 - Pf6N2E2_4180 0.64 +1.3 4,865,222 - Pf6N2E2_4180 0.64 +0.4 4,865,222 - Pf6N2E2_4180 0.64 -0.4 4,865,222 - Pf6N2E2_4180 0.64 -1.0 4,865,222 - Pf6N2E2_4180 0.64 +1.1 4,865,222 - Pf6N2E2_4180 0.64 +1.0 4,865,291 + Pf6N2E2_4180 0.70 -0.1 4,865,291 + Pf6N2E2_4180 0.70 +0.1 4,865,291 + Pf6N2E2_4180 0.70 +0.6 4,865,291 + Pf6N2E2_4180 0.70 +2.1 4,865,291 + Pf6N2E2_4180 0.70 +3.1 4,865,292 - Pf6N2E2_4180 0.70 +3.0 4,865,292 - Pf6N2E2_4180 0.70 +0.5 4,865,292 - Pf6N2E2_4180 0.70 +0.7 4,865,292 - Pf6N2E2_4180 0.70 +1.0 4,865,459 - Pf6N2E2_4180 0.85 -1.0 4,865,496 + Pf6N2E2_4180 0.89 +0.2 4,865,496 + Pf6N2E2_4180 0.89 +0.6 4,865,496 + Pf6N2E2_4180 0.89 +1.5 4,865,533 + +0.4 4,865,533 + +0.9 4,865,534 - +1.1 4,865,534 - +1.3 4,865,536 + +0.3 4,865,536 + +1.5 4,865,536 + -0.2 4,865,536 + -0.2 4,865,537 - -0.1 4,865,537 - +0.5 4,865,537 - +1.6 4,865,537 - +1.9 4,865,602 + +0.9 4,865,681 - -0.7 4,865,833 - -0.6 4,865,833 - +0.3 4,865,833 - -1.3 4,866,069 + -0.6 4,866,102 + -2.9 4,866,103 - -0.9 4,866,103 - +1.6 4,866,127 + -2.0 4,866,127 + -1.0 4,866,127 + +0.1 4,866,127 + -2.8 4,866,128 - +2.3 4,866,274 + Pf6N2E2_4181 0.38 -3.1 4,866,532 + -2.8 4,866,532 + -2.7 4,866,533 - +1.5 4,866,552 + -0.4 4,866,553 - +1.3 4,866,651 + Pf6N2E2_4182 0.22 -2.0 4,866,651 + Pf6N2E2_4182 0.22 -0.5 4,866,651 + Pf6N2E2_4182 0.22 +2.5 4,866,651 + Pf6N2E2_4182 0.22 +0.1 4,866,651 + Pf6N2E2_4182 0.22 +1.3 4,866,651 + Pf6N2E2_4182 0.22 -0.7 4,866,652 - Pf6N2E2_4182 0.23 +0.8 4,866,652 - Pf6N2E2_4182 0.23 +0.8 4,866,652 - Pf6N2E2_4182 0.23 +0.2 4,866,652 - Pf6N2E2_4182 0.23 +0.2 4,866,890 + Pf6N2E2_4182 0.87 -0.3 4,866,891 - Pf6N2E2_4182 0.88 -1.0 4,867,005 + -2.0 4,867,005 + +0.2 4,867,006 - -0.4 4,867,006 - +1.5 4,867,006 - +1.3 4,867,006 - +0.9 4,867,053 + +0.6 4,867,053 + +1.6 4,867,131 + Pf6N2E2_4183 0.10 +0.2 4,867,132 - Pf6N2E2_4183 0.10 +1.4 4,867,132 - Pf6N2E2_4183 0.10 -2.7 4,867,132 - Pf6N2E2_4183 0.10 +1.0 4,867,132 - Pf6N2E2_4183 0.10 -0.6 4,867,132 - Pf6N2E2_4183 0.10 -0.1 4,867,132 - Pf6N2E2_4183 0.10 -2.2 4,867,505 + Pf6N2E2_4183 0.57 -0.1 4,867,505 + Pf6N2E2_4183 0.57 +0.3 4,867,505 + Pf6N2E2_4183 0.57 -0.2 4,867,505 + Pf6N2E2_4183 0.57 -1.4 4,867,505 + Pf6N2E2_4183 0.57 -0.7 4,867,505 + Pf6N2E2_4183 0.57 +1.9 4,867,505 + Pf6N2E2_4183 0.57 +2.2 4,867,505 + Pf6N2E2_4183 0.57 -0.5 4,867,505 + Pf6N2E2_4183 0.57 -0.2 4,867,505 + Pf6N2E2_4183 0.57 -0.3 4,867,505 + Pf6N2E2_4183 0.57 +0.3 4,867,506 - Pf6N2E2_4183 0.58 +0.1 4,867,506 - Pf6N2E2_4183 0.58 +1.0 4,867,506 - Pf6N2E2_4183 0.58 +1.0 4,867,506 - Pf6N2E2_4183 0.58 -0.9 4,867,506 - Pf6N2E2_4183 0.58 +1.2 4,867,506 - Pf6N2E2_4183 0.58 -1.4 4,867,506 - Pf6N2E2_4183 0.58 -2.2 4,867,506 - Pf6N2E2_4183 0.58 +1.4
Or see this region's nucleotide sequence