Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3625

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3624 and Pf6N2E2_3625 are separated by 3 nucleotidesPf6N2E2_3625 and Pf6N2E2_3626 are separated by 167 nucleotides Pf6N2E2_3624 - Flagellar motor rotation protein MotB, at 4,219,584 to 4,220,621 _3624 Pf6N2E2_3625 - Flagellar motor rotation protein MotA, at 4,220,625 to 4,221,476 _3625 Pf6N2E2_3626 - Predicted signal transduction protein, at 4,221,644 to 4,223,182 _3626 Position (kb) 4220 4221 4222Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 4219.829 kb on + strand, within Pf6N2E2_3624at 4219.830 kb on - strand, within Pf6N2E2_3624at 4220.002 kb on + strand, within Pf6N2E2_3624at 4220.018 kb on + strand, within Pf6N2E2_3624at 4220.092 kb on + strand, within Pf6N2E2_3624at 4220.093 kb on - strand, within Pf6N2E2_3624at 4220.404 kb on + strand, within Pf6N2E2_3624at 4220.404 kb on + strand, within Pf6N2E2_3624at 4220.405 kb on - strand, within Pf6N2E2_3624at 4220.405 kb on - strand, within Pf6N2E2_3624at 4220.405 kb on - strand, within Pf6N2E2_3624at 4220.405 kb on - strand, within Pf6N2E2_3624at 4220.446 kb on + strand, within Pf6N2E2_3624at 4220.447 kb on - strand, within Pf6N2E2_3624at 4220.447 kb on - strand, within Pf6N2E2_3624at 4220.627 kb on - strandat 4220.764 kb on + strand, within Pf6N2E2_3625at 4220.764 kb on + strand, within Pf6N2E2_3625at 4220.765 kb on - strand, within Pf6N2E2_3625at 4220.765 kb on - strand, within Pf6N2E2_3625at 4220.765 kb on - strand, within Pf6N2E2_3625at 4220.937 kb on + strand, within Pf6N2E2_3625at 4221.025 kb on + strand, within Pf6N2E2_3625at 4221.025 kb on + strand, within Pf6N2E2_3625at 4221.026 kb on - strand, within Pf6N2E2_3625at 4221.026 kb on - strand, within Pf6N2E2_3625at 4221.026 kb on - strand, within Pf6N2E2_3625at 4221.095 kb on - strand, within Pf6N2E2_3625at 4221.095 kb on - strand, within Pf6N2E2_3625at 4221.142 kb on + strand, within Pf6N2E2_3625at 4221.232 kb on + strand, within Pf6N2E2_3625at 4221.232 kb on + strand, within Pf6N2E2_3625at 4221.233 kb on - strand, within Pf6N2E2_3625at 4221.233 kb on - strand, within Pf6N2E2_3625at 4221.233 kb on - strand, within Pf6N2E2_3625at 4221.233 kb on - strand, within Pf6N2E2_3625at 4221.233 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.257 kb on - strand, within Pf6N2E2_3625at 4221.269 kb on + strand, within Pf6N2E2_3625at 4221.320 kb on + strand, within Pf6N2E2_3625at 4221.320 kb on + strand, within Pf6N2E2_3625at 4221.320 kb on + strand, within Pf6N2E2_3625at 4221.320 kb on + strand, within Pf6N2E2_3625at 4221.320 kb on + strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.321 kb on - strand, within Pf6N2E2_3625at 4221.322 kb on + strand, within Pf6N2E2_3625at 4221.322 kb on + strand, within Pf6N2E2_3625at 4221.322 kb on + strand, within Pf6N2E2_3625at 4221.322 kb on + strand, within Pf6N2E2_3625at 4221.323 kb on - strand, within Pf6N2E2_3625at 4221.323 kb on - strand, within Pf6N2E2_3625at 4221.323 kb on - strand, within Pf6N2E2_3625at 4221.435 kb on + strandat 4221.436 kb on - strandat 4221.436 kb on - strandat 4221.464 kb on + strandat 4221.476 kb on + strandat 4221.476 kb on + strandat 4221.477 kb on - strandat 4221.477 kb on - strandat 4221.477 kb on - strandat 4221.481 kb on - strandat 4221.481 kb on - strandat 4221.487 kb on + strandat 4221.487 kb on + strandat 4221.488 kb on - strandat 4221.491 kb on + strandat 4221.491 kb on + strandat 4221.492 kb on - strandat 4221.492 kb on - strandat 4221.492 kb on - strandat 4221.492 kb on - strandat 4221.492 kb on - strandat 4221.492 kb on - strandat 4221.495 kb on + strandat 4221.495 kb on + strandat 4221.496 kb on - strandat 4221.496 kb on - strandat 4221.514 kb on + strandat 4221.514 kb on + strandat 4221.542 kb on + strandat 4221.542 kb on + strandat 4221.542 kb on + strandat 4221.542 kb on + strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.543 kb on - strandat 4221.547 kb on - strandat 4221.568 kb on + strandat 4221.568 kb on + strandat 4221.568 kb on + strandat 4221.569 kb on - strandat 4221.569 kb on - strandat 4221.570 kb on + strandat 4221.570 kb on + strandat 4221.570 kb on + strandat 4221.571 kb on - strandat 4221.571 kb on - strandat 4221.571 kb on - strandat 4221.613 kb on + strandat 4221.613 kb on + strandat 4221.614 kb on - strandat 4221.614 kb on - strandat 4221.614 kb on - strandat 4221.786 kb on + strandat 4221.786 kb on + strandat 4221.787 kb on - strandat 4221.787 kb on - strandat 4221.854 kb on + strand, within Pf6N2E2_3626at 4221.854 kb on + strand, within Pf6N2E2_3626at 4221.854 kb on + strand, within Pf6N2E2_3626at 4221.854 kb on + strand, within Pf6N2E2_3626at 4221.855 kb on - strand, within Pf6N2E2_3626at 4221.855 kb on - strand, within Pf6N2E2_3626at 4221.855 kb on - strand, within Pf6N2E2_3626at 4221.855 kb on - strand, within Pf6N2E2_3626at 4221.855 kb on - strand, within Pf6N2E2_3626at 4222.191 kb on + strand, within Pf6N2E2_3626at 4222.191 kb on + strand, within Pf6N2E2_3626at 4222.192 kb on - strand, within Pf6N2E2_3626at 4222.192 kb on - strand, within Pf6N2E2_3626

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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4,219,829 + Pf6N2E2_3624 0.24 +6.9
4,219,830 - Pf6N2E2_3624 0.24 +7.2
4,220,002 + Pf6N2E2_3624 0.40 +5.6
4,220,018 + Pf6N2E2_3624 0.42 +4.6
4,220,092 + Pf6N2E2_3624 0.49 +6.2
4,220,093 - Pf6N2E2_3624 0.49 +5.9
4,220,404 + Pf6N2E2_3624 0.79 +5.9
4,220,404 + Pf6N2E2_3624 0.79 +7.0
4,220,405 - Pf6N2E2_3624 0.79 +4.7
4,220,405 - Pf6N2E2_3624 0.79 +5.8
4,220,405 - Pf6N2E2_3624 0.79 +6.0
4,220,405 - Pf6N2E2_3624 0.79 +2.2
4,220,446 + Pf6N2E2_3624 0.83 +6.7
4,220,447 - Pf6N2E2_3624 0.83 +7.5
4,220,447 - Pf6N2E2_3624 0.83 +6.6
4,220,627 - +1.9
4,220,764 + Pf6N2E2_3625 0.16 +8.5
4,220,764 + Pf6N2E2_3625 0.16 +5.4
4,220,765 - Pf6N2E2_3625 0.16 +6.9
4,220,765 - Pf6N2E2_3625 0.16 +6.6
4,220,765 - Pf6N2E2_3625 0.16 +6.7
4,220,937 + Pf6N2E2_3625 0.37 +7.3
4,221,025 + Pf6N2E2_3625 0.47 +5.2
4,221,025 + Pf6N2E2_3625 0.47 +7.2
4,221,026 - Pf6N2E2_3625 0.47 +7.5
4,221,026 - Pf6N2E2_3625 0.47 +3.8
4,221,026 - Pf6N2E2_3625 0.47 +5.3
4,221,095 - Pf6N2E2_3625 0.55 +7.5
4,221,095 - Pf6N2E2_3625 0.55 +6.8
4,221,142 + Pf6N2E2_3625 0.61 +8.1
4,221,232 + Pf6N2E2_3625 0.71 +6.4
4,221,232 + Pf6N2E2_3625 0.71 +5.4
4,221,233 - Pf6N2E2_3625 0.71 +6.6
4,221,233 - Pf6N2E2_3625 0.71 +8.4
4,221,233 - Pf6N2E2_3625 0.71 +8.1
4,221,233 - Pf6N2E2_3625 0.71 +6.4
4,221,233 - Pf6N2E2_3625 0.71 +7.2
4,221,257 - Pf6N2E2_3625 0.74 +7.8
4,221,257 - Pf6N2E2_3625 0.74 +7.9
4,221,257 - Pf6N2E2_3625 0.74 +7.0
4,221,257 - Pf6N2E2_3625 0.74 +6.5
4,221,257 - Pf6N2E2_3625 0.74 +6.1
4,221,257 - Pf6N2E2_3625 0.74 +7.3
4,221,269 + Pf6N2E2_3625 0.76 +3.8
4,221,320 + Pf6N2E2_3625 0.82 +7.6
4,221,320 + Pf6N2E2_3625 0.82 +4.0
4,221,320 + Pf6N2E2_3625 0.82 +7.7
4,221,320 + Pf6N2E2_3625 0.82 +7.5
4,221,320 + Pf6N2E2_3625 0.82 +7.2
4,221,321 - Pf6N2E2_3625 0.82 +6.8
4,221,321 - Pf6N2E2_3625 0.82 +6.5
4,221,321 - Pf6N2E2_3625 0.82 +7.3
4,221,321 - Pf6N2E2_3625 0.82 +7.7
4,221,321 - Pf6N2E2_3625 0.82 +7.5
4,221,321 - Pf6N2E2_3625 0.82 +5.1
4,221,321 - Pf6N2E2_3625 0.82 +5.1
4,221,321 - Pf6N2E2_3625 0.82 +7.5
4,221,322 + Pf6N2E2_3625 0.82 +7.1
4,221,322 + Pf6N2E2_3625 0.82 +7.8
4,221,322 + Pf6N2E2_3625 0.82 +6.7
4,221,322 + Pf6N2E2_3625 0.82 +7.8
4,221,323 - Pf6N2E2_3625 0.82 +7.9
4,221,323 - Pf6N2E2_3625 0.82 +6.5
4,221,323 - Pf6N2E2_3625 0.82 +7.6
4,221,435 + +8.9
4,221,436 - +6.7
4,221,436 - +7.6
4,221,464 + +9.1
4,221,476 + +9.2
4,221,476 + +7.6
4,221,477 - +4.6
4,221,477 - +3.8
4,221,477 - +8.1
4,221,481 - +4.3
4,221,481 - +4.5
4,221,487 + +6.6
4,221,487 + +8.1
4,221,488 - -1.0
4,221,491 + +8.0
4,221,491 + +5.6
4,221,492 - +0.0
4,221,492 - -0.7
4,221,492 - -0.3
4,221,492 - -0.3
4,221,492 - +0.2
4,221,492 - -0.9
4,221,495 + +6.3
4,221,495 + +5.9
4,221,496 - -0.9
4,221,496 - -1.3
4,221,514 + +8.0
4,221,514 + +7.7
4,221,542 + +7.1
4,221,542 + +6.7
4,221,542 + +8.3
4,221,542 + +8.2
4,221,543 - -0.7
4,221,543 - -1.5
4,221,543 - -1.8
4,221,543 - -0.3
4,221,543 - -0.3
4,221,543 - -1.5
4,221,543 - +0.2
4,221,543 - +0.8
4,221,547 - -0.9
4,221,568 + +7.7
4,221,568 + +8.2
4,221,568 + +7.2
4,221,569 - +0.4
4,221,569 - -1.0
4,221,570 + +8.1
4,221,570 + +7.2
4,221,570 + +7.0
4,221,571 - +0.4
4,221,571 - +0.4
4,221,571 - -2.1
4,221,613 + +7.9
4,221,613 + +7.9
4,221,614 - -1.6
4,221,614 - -0.6
4,221,614 - -1.8
4,221,786 + +7.9
4,221,786 + +6.5
4,221,787 - +0.7
4,221,787 - -0.7
4,221,854 + Pf6N2E2_3626 0.14 +7.3
4,221,854 + Pf6N2E2_3626 0.14 +5.5
4,221,854 + Pf6N2E2_3626 0.14 +5.9
4,221,854 + Pf6N2E2_3626 0.14 +6.0
4,221,855 - Pf6N2E2_3626 0.14 +0.1
4,221,855 - Pf6N2E2_3626 0.14 -1.6
4,221,855 - Pf6N2E2_3626 0.14 +0.0
4,221,855 - Pf6N2E2_3626 0.14 +1.5
4,221,855 - Pf6N2E2_3626 0.14 -1.2
4,222,191 + Pf6N2E2_3626 0.36 +1.9
4,222,191 + Pf6N2E2_3626 0.36 +1.4
4,222,192 - Pf6N2E2_3626 0.36 +0.6
4,222,192 - Pf6N2E2_3626 0.36 -1.1

Or see this region's nucleotide sequence