Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2626

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2625 and Pf6N2E2_2626 are separated by 9 nucleotidesPf6N2E2_2626 and Pf6N2E2_2627 are separated by 70 nucleotidesPf6N2E2_2627 and Pf6N2E2_2628 are separated by 49 nucleotides Pf6N2E2_2625 - Flagellar P-ring protein FlgI, at 3,086,961 to 3,088,067 _2625 Pf6N2E2_2626 - Flagellar L-ring protein FlgH, at 3,088,077 to 3,088,772 _2626 Pf6N2E2_2627 - Flagellar basal-body rod protein FlgG, at 3,088,843 to 3,089,628 _2627 Pf6N2E2_2628 - Flagellar basal-body rod protein FlgF, at 3,089,678 to 3,090,415 _2628 Position (kb) 3088 3089Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3087.352 kb on + strand, within Pf6N2E2_2625at 3087.353 kb on - strand, within Pf6N2E2_2625at 3087.353 kb on - strand, within Pf6N2E2_2625at 3087.353 kb on - strand, within Pf6N2E2_2625at 3087.353 kb on - strand, within Pf6N2E2_2625at 3087.658 kb on + strand, within Pf6N2E2_2625at 3087.658 kb on + strand, within Pf6N2E2_2625at 3088.058 kb on + strandat 3088.058 kb on + strandat 3088.058 kb on + strandat 3088.059 kb on - strandat 3088.078 kb on + strandat 3088.079 kb on - strandat 3088.159 kb on + strand, within Pf6N2E2_2626at 3088.159 kb on + strand, within Pf6N2E2_2626at 3088.159 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.199 kb on + strand, within Pf6N2E2_2626at 3088.200 kb on - strand, within Pf6N2E2_2626at 3088.200 kb on - strand, within Pf6N2E2_2626at 3088.200 kb on - strand, within Pf6N2E2_2626at 3088.200 kb on - strand, within Pf6N2E2_2626at 3088.209 kb on - strand, within Pf6N2E2_2626at 3088.597 kb on + strand, within Pf6N2E2_2626at 3088.598 kb on - strand, within Pf6N2E2_2626at 3088.624 kb on + strand, within Pf6N2E2_2626at 3088.681 kb on + strand, within Pf6N2E2_2626at 3088.681 kb on + strand, within Pf6N2E2_2626at 3088.682 kb on - strand, within Pf6N2E2_2626at 3088.682 kb on - strand, within Pf6N2E2_2626at 3088.682 kb on - strand, within Pf6N2E2_2626at 3088.684 kb on + strand, within Pf6N2E2_2626at 3088.685 kb on - strand, within Pf6N2E2_2626at 3088.685 kb on - strand, within Pf6N2E2_2626at 3088.685 kb on - strand, within Pf6N2E2_2626at 3088.758 kb on + strandat 3088.758 kb on + strandat 3088.758 kb on + strandat 3088.758 kb on + strandat 3088.759 kb on - strandat 3088.759 kb on - strandat 3088.778 kb on + strandat 3088.778 kb on + strandat 3088.778 kb on + strandat 3088.779 kb on - strandat 3088.818 kb on + strandat 3088.818 kb on + strandat 3088.819 kb on - strandat 3088.819 kb on - strandat 3088.819 kb on - strandat 3088.910 kb on + strandat 3089.050 kb on + strand, within Pf6N2E2_2627at 3089.274 kb on + strand, within Pf6N2E2_2627at 3089.275 kb on - strand, within Pf6N2E2_2627at 3089.275 kb on - strand, within Pf6N2E2_2627at 3089.288 kb on + strand, within Pf6N2E2_2627at 3089.288 kb on + strand, within Pf6N2E2_2627at 3089.289 kb on - strand, within Pf6N2E2_2627at 3089.485 kb on + strand, within Pf6N2E2_2627at 3089.492 kb on + strand, within Pf6N2E2_2627at 3089.492 kb on + strand, within Pf6N2E2_2627at 3089.493 kb on - strand, within Pf6N2E2_2627at 3089.565 kb on + strandat 3089.565 kb on + strandat 3089.566 kb on - strandat 3089.614 kb on + strandat 3089.642 kb on + strandat 3089.642 kb on + strandat 3089.672 kb on + strandat 3089.672 kb on + strandat 3089.672 kb on + strandat 3089.672 kb on + strandat 3089.673 kb on - strandat 3089.673 kb on - strandat 3089.679 kb on + strandat 3089.679 kb on + strandat 3089.679 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,087,352 + Pf6N2E2_2625 0.35 -2.8
3,087,353 - Pf6N2E2_2625 0.35 -2.8
3,087,353 - Pf6N2E2_2625 0.35 -3.4
3,087,353 - Pf6N2E2_2625 0.35 -1.0
3,087,353 - Pf6N2E2_2625 0.35 -3.2
3,087,658 + Pf6N2E2_2625 0.63 -3.0
3,087,658 + Pf6N2E2_2625 0.63 -1.5
3,088,058 + -2.4
3,088,058 + -1.5
3,088,058 + -2.6
3,088,059 - -1.4
3,088,078 + -0.7
3,088,079 - -2.9
3,088,159 + Pf6N2E2_2626 0.12 -3.6
3,088,159 + Pf6N2E2_2626 0.12 -1.6
3,088,159 + Pf6N2E2_2626 0.12 -2.1
3,088,199 + Pf6N2E2_2626 0.18 -2.1
3,088,199 + Pf6N2E2_2626 0.18 -1.5
3,088,199 + Pf6N2E2_2626 0.18 -2.9
3,088,199 + Pf6N2E2_2626 0.18 -3.2
3,088,199 + Pf6N2E2_2626 0.18 -2.4
3,088,199 + Pf6N2E2_2626 0.18 -0.7
3,088,199 + Pf6N2E2_2626 0.18 -2.5
3,088,200 - Pf6N2E2_2626 0.18 -3.0
3,088,200 - Pf6N2E2_2626 0.18 -1.8
3,088,200 - Pf6N2E2_2626 0.18 -2.2
3,088,200 - Pf6N2E2_2626 0.18 -3.0
3,088,209 - Pf6N2E2_2626 0.19 -3.0
3,088,597 + Pf6N2E2_2626 0.75 -3.6
3,088,598 - Pf6N2E2_2626 0.75 -4.1
3,088,624 + Pf6N2E2_2626 0.79 -4.0
3,088,681 + Pf6N2E2_2626 0.87 -3.7
3,088,681 + Pf6N2E2_2626 0.87 -2.0
3,088,682 - Pf6N2E2_2626 0.87 -2.7
3,088,682 - Pf6N2E2_2626 0.87 -3.2
3,088,682 - Pf6N2E2_2626 0.87 -4.8
3,088,684 + Pf6N2E2_2626 0.87 -2.2
3,088,685 - Pf6N2E2_2626 0.87 -3.4
3,088,685 - Pf6N2E2_2626 0.87 -1.3
3,088,685 - Pf6N2E2_2626 0.87 -3.7
3,088,758 + -1.5
3,088,758 + -2.8
3,088,758 + -3.3
3,088,758 + -3.5
3,088,759 - -2.0
3,088,759 - -1.6
3,088,778 + -2.3
3,088,778 + -2.0
3,088,778 + -3.4
3,088,779 - -3.2
3,088,818 + -3.5
3,088,818 + -2.8
3,088,819 - +0.0
3,088,819 - -0.5
3,088,819 - -0.4
3,088,910 + -1.8
3,089,050 + Pf6N2E2_2627 0.26 -2.9
3,089,274 + Pf6N2E2_2627 0.55 -0.8
3,089,275 - Pf6N2E2_2627 0.55 -1.2
3,089,275 - Pf6N2E2_2627 0.55 -2.9
3,089,288 + Pf6N2E2_2627 0.57 -3.3
3,089,288 + Pf6N2E2_2627 0.57 -2.8
3,089,289 - Pf6N2E2_2627 0.57 -3.6
3,089,485 + Pf6N2E2_2627 0.82 -3.9
3,089,492 + Pf6N2E2_2627 0.83 -2.4
3,089,492 + Pf6N2E2_2627 0.83 -3.8
3,089,493 - Pf6N2E2_2627 0.83 -4.3
3,089,565 + -1.3
3,089,565 + -2.1
3,089,566 - -2.6
3,089,614 + -0.2
3,089,642 + -1.5
3,089,642 + -1.1
3,089,672 + -1.7
3,089,672 + -3.4
3,089,672 + -2.8
3,089,672 + -3.1
3,089,673 - +2.6
3,089,673 - +3.2
3,089,679 + +0.4
3,089,679 + -1.1
3,089,679 + -1.9

Or see this region's nucleotide sequence