Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2625 and Pf6N2E2_2626 are separated by 9 nucleotides Pf6N2E2_2626 and Pf6N2E2_2627 are separated by 70 nucleotides Pf6N2E2_2627 and Pf6N2E2_2628 are separated by 49 nucleotides
Pf6N2E2_2625 - Flagellar P-ring protein FlgI, at 3,086,961 to 3,088,067
_2625
Pf6N2E2_2626 - Flagellar L-ring protein FlgH, at 3,088,077 to 3,088,772
_2626
Pf6N2E2_2627 - Flagellar basal-body rod protein FlgG, at 3,088,843 to 3,089,628
_2627
Pf6N2E2_2628 - Flagellar basal-body rod protein FlgF, at 3,089,678 to 3,090,415
_2628
Position (kb)
3088
3089 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3087.352 kb on + strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.353 kb on - strand, within Pf6N2E2_2625 at 3087.658 kb on + strand, within Pf6N2E2_2625 at 3087.658 kb on + strand, within Pf6N2E2_2625 at 3088.058 kb on + strand at 3088.058 kb on + strand at 3088.058 kb on + strand at 3088.059 kb on - strand at 3088.078 kb on + strand at 3088.079 kb on - strand at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.159 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.199 kb on + strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.200 kb on - strand, within Pf6N2E2_2626 at 3088.209 kb on - strand, within Pf6N2E2_2626 at 3088.597 kb on + strand, within Pf6N2E2_2626 at 3088.598 kb on - strand, within Pf6N2E2_2626 at 3088.624 kb on + strand, within Pf6N2E2_2626 at 3088.681 kb on + strand, within Pf6N2E2_2626 at 3088.681 kb on + strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.682 kb on - strand, within Pf6N2E2_2626 at 3088.684 kb on + strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.685 kb on - strand, within Pf6N2E2_2626 at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.758 kb on + strand at 3088.759 kb on - strand at 3088.759 kb on - strand at 3088.778 kb on + strand at 3088.778 kb on + strand at 3088.778 kb on + strand at 3088.779 kb on - strand at 3088.818 kb on + strand at 3088.818 kb on + strand at 3088.819 kb on - strand at 3088.819 kb on - strand at 3088.819 kb on - strand at 3088.910 kb on + strand at 3089.050 kb on + strand, within Pf6N2E2_2627 at 3089.274 kb on + strand, within Pf6N2E2_2627 at 3089.275 kb on - strand, within Pf6N2E2_2627 at 3089.275 kb on - strand, within Pf6N2E2_2627 at 3089.288 kb on + strand, within Pf6N2E2_2627 at 3089.288 kb on + strand, within Pf6N2E2_2627 at 3089.289 kb on - strand, within Pf6N2E2_2627 at 3089.485 kb on + strand, within Pf6N2E2_2627 at 3089.492 kb on + strand, within Pf6N2E2_2627 at 3089.492 kb on + strand, within Pf6N2E2_2627 at 3089.493 kb on - strand, within Pf6N2E2_2627 at 3089.565 kb on + strand at 3089.565 kb on + strand at 3089.566 kb on - strand at 3089.614 kb on + strand at 3089.642 kb on + strand at 3089.642 kb on + strand at 3089.672 kb on + strand at 3089.672 kb on + strand at 3089.672 kb on + strand at 3089.672 kb on + strand at 3089.673 kb on - strand at 3089.673 kb on - strand at 3089.679 kb on + strand at 3089.679 kb on + strand at 3089.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 3,087,352 + Pf6N2E2_2625 0.35 -2.8 3,087,353 - Pf6N2E2_2625 0.35 -2.8 3,087,353 - Pf6N2E2_2625 0.35 -3.4 3,087,353 - Pf6N2E2_2625 0.35 -1.0 3,087,353 - Pf6N2E2_2625 0.35 -3.2 3,087,658 + Pf6N2E2_2625 0.63 -3.0 3,087,658 + Pf6N2E2_2625 0.63 -1.5 3,088,058 + -2.4 3,088,058 + -1.5 3,088,058 + -2.6 3,088,059 - -1.4 3,088,078 + -0.7 3,088,079 - -2.9 3,088,159 + Pf6N2E2_2626 0.12 -3.6 3,088,159 + Pf6N2E2_2626 0.12 -1.6 3,088,159 + Pf6N2E2_2626 0.12 -2.1 3,088,199 + Pf6N2E2_2626 0.18 -2.1 3,088,199 + Pf6N2E2_2626 0.18 -1.5 3,088,199 + Pf6N2E2_2626 0.18 -2.9 3,088,199 + Pf6N2E2_2626 0.18 -3.2 3,088,199 + Pf6N2E2_2626 0.18 -2.4 3,088,199 + Pf6N2E2_2626 0.18 -0.7 3,088,199 + Pf6N2E2_2626 0.18 -2.5 3,088,200 - Pf6N2E2_2626 0.18 -3.0 3,088,200 - Pf6N2E2_2626 0.18 -1.8 3,088,200 - Pf6N2E2_2626 0.18 -2.2 3,088,200 - Pf6N2E2_2626 0.18 -3.0 3,088,209 - Pf6N2E2_2626 0.19 -3.0 3,088,597 + Pf6N2E2_2626 0.75 -3.6 3,088,598 - Pf6N2E2_2626 0.75 -4.1 3,088,624 + Pf6N2E2_2626 0.79 -4.0 3,088,681 + Pf6N2E2_2626 0.87 -3.7 3,088,681 + Pf6N2E2_2626 0.87 -2.0 3,088,682 - Pf6N2E2_2626 0.87 -2.7 3,088,682 - Pf6N2E2_2626 0.87 -3.2 3,088,682 - Pf6N2E2_2626 0.87 -4.8 3,088,684 + Pf6N2E2_2626 0.87 -2.2 3,088,685 - Pf6N2E2_2626 0.87 -3.4 3,088,685 - Pf6N2E2_2626 0.87 -1.3 3,088,685 - Pf6N2E2_2626 0.87 -3.7 3,088,758 + -1.5 3,088,758 + -2.8 3,088,758 + -3.3 3,088,758 + -3.5 3,088,759 - -2.0 3,088,759 - -1.6 3,088,778 + -2.3 3,088,778 + -2.0 3,088,778 + -3.4 3,088,779 - -3.2 3,088,818 + -3.5 3,088,818 + -2.8 3,088,819 - +0.0 3,088,819 - -0.5 3,088,819 - -0.4 3,088,910 + -1.8 3,089,050 + Pf6N2E2_2627 0.26 -2.9 3,089,274 + Pf6N2E2_2627 0.55 -0.8 3,089,275 - Pf6N2E2_2627 0.55 -1.2 3,089,275 - Pf6N2E2_2627 0.55 -2.9 3,089,288 + Pf6N2E2_2627 0.57 -3.3 3,089,288 + Pf6N2E2_2627 0.57 -2.8 3,089,289 - Pf6N2E2_2627 0.57 -3.6 3,089,485 + Pf6N2E2_2627 0.82 -3.9 3,089,492 + Pf6N2E2_2627 0.83 -2.4 3,089,492 + Pf6N2E2_2627 0.83 -3.8 3,089,493 - Pf6N2E2_2627 0.83 -4.3 3,089,565 + -1.3 3,089,565 + -2.1 3,089,566 - -2.6 3,089,614 + -0.2 3,089,642 + -1.5 3,089,642 + -1.1 3,089,672 + -1.7 3,089,672 + -3.4 3,089,672 + -2.8 3,089,672 + -3.1 3,089,673 - +2.6 3,089,673 - +3.2 3,089,679 + +0.4 3,089,679 + -1.1 3,089,679 + -1.9
Or see this region's nucleotide sequence