Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2621

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2619 and Pf6N2E2_2620 are separated by 284 nucleotidesPf6N2E2_2620 and Pf6N2E2_2621 are separated by 65 nucleotidesPf6N2E2_2621 and Pf6N2E2_2622 are separated by 94 nucleotides Pf6N2E2_2619 - Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33), at 3,077,280 to 3,078,038 _2619 Pf6N2E2_2620 - O-antigen biosynthesis protein, at 3,078,323 to 3,078,571 _2620 Pf6N2E2_2621 - glycosyl transferase, group 2 family protein, at 3,078,637 to 3,081,894 _2621 Pf6N2E2_2622 - Flagellar hook-associated protein FlgL, at 3,081,989 to 3,083,554 _2622 Position (kb) 3078 3079 3080 3081 3082Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3077.674 kb on + strand, within Pf6N2E2_2619at 3077.674 kb on + strand, within Pf6N2E2_2619at 3077.675 kb on - strand, within Pf6N2E2_2619at 3077.788 kb on + strand, within Pf6N2E2_2619at 3077.788 kb on + strand, within Pf6N2E2_2619at 3077.788 kb on + strand, within Pf6N2E2_2619at 3077.822 kb on + strand, within Pf6N2E2_2619at 3077.823 kb on - strand, within Pf6N2E2_2619at 3077.854 kb on + strand, within Pf6N2E2_2619at 3077.854 kb on + strand, within Pf6N2E2_2619at 3077.855 kb on - strand, within Pf6N2E2_2619at 3077.881 kb on + strand, within Pf6N2E2_2619at 3077.882 kb on - strand, within Pf6N2E2_2619at 3077.891 kb on - strand, within Pf6N2E2_2619at 3077.891 kb on - strand, within Pf6N2E2_2619at 3077.891 kb on - strand, within Pf6N2E2_2619at 3078.041 kb on + strandat 3078.042 kb on - strandat 3078.119 kb on - strandat 3078.170 kb on - strandat 3078.177 kb on + strandat 3078.178 kb on - strandat 3078.265 kb on - strandat 3078.282 kb on - strandat 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.378 kb on + strand, within Pf6N2E2_2620at 3078.379 kb on - strand, within Pf6N2E2_2620at 3078.379 kb on - strand, within Pf6N2E2_2620at 3078.420 kb on + strand, within Pf6N2E2_2620at 3078.421 kb on - strand, within Pf6N2E2_2620at 3078.421 kb on - strand, within Pf6N2E2_2620at 3078.424 kb on + strand, within Pf6N2E2_2620at 3078.424 kb on + strand, within Pf6N2E2_2620at 3078.496 kb on + strand, within Pf6N2E2_2620at 3078.660 kb on + strandat 3078.661 kb on - strandat 3078.697 kb on + strandat 3078.697 kb on + strandat 3078.698 kb on - strandat 3078.698 kb on - strandat 3078.698 kb on - strandat 3078.698 kb on - strandat 3078.841 kb on - strandat 3079.052 kb on + strand, within Pf6N2E2_2621at 3079.053 kb on - strand, within Pf6N2E2_2621at 3079.053 kb on - strand, within Pf6N2E2_2621at 3079.053 kb on - strand, within Pf6N2E2_2621at 3079.144 kb on + strand, within Pf6N2E2_2621at 3079.152 kb on + strand, within Pf6N2E2_2621at 3079.297 kb on + strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.298 kb on - strand, within Pf6N2E2_2621at 3079.603 kb on - strand, within Pf6N2E2_2621at 3079.603 kb on - strand, within Pf6N2E2_2621at 3079.730 kb on + strand, within Pf6N2E2_2621at 3079.730 kb on + strand, within Pf6N2E2_2621at 3079.731 kb on - strand, within Pf6N2E2_2621at 3079.804 kb on + strand, within Pf6N2E2_2621at 3079.805 kb on - strand, within Pf6N2E2_2621at 3079.805 kb on - strand, within Pf6N2E2_2621at 3079.805 kb on - strand, within Pf6N2E2_2621at 3079.805 kb on - strand, within Pf6N2E2_2621at 3079.903 kb on + strand, within Pf6N2E2_2621at 3079.910 kb on + strand, within Pf6N2E2_2621at 3079.910 kb on + strand, within Pf6N2E2_2621at 3079.941 kb on + strand, within Pf6N2E2_2621at 3079.942 kb on - strand, within Pf6N2E2_2621at 3080.084 kb on + strand, within Pf6N2E2_2621at 3080.085 kb on - strand, within Pf6N2E2_2621at 3080.164 kb on + strand, within Pf6N2E2_2621at 3080.164 kb on + strand, within Pf6N2E2_2621at 3080.164 kb on + strand, within Pf6N2E2_2621at 3080.164 kb on + strand, within Pf6N2E2_2621at 3080.186 kb on + strand, within Pf6N2E2_2621at 3080.486 kb on + strand, within Pf6N2E2_2621at 3080.577 kb on - strand, within Pf6N2E2_2621at 3080.667 kb on - strand, within Pf6N2E2_2621at 3080.667 kb on - strand, within Pf6N2E2_2621at 3080.667 kb on - strand, within Pf6N2E2_2621at 3080.667 kb on - strand, within Pf6N2E2_2621at 3080.667 kb on - strand, within Pf6N2E2_2621at 3080.704 kb on - strand, within Pf6N2E2_2621at 3080.733 kb on - strand, within Pf6N2E2_2621at 3080.733 kb on - strand, within Pf6N2E2_2621at 3080.804 kb on + strand, within Pf6N2E2_2621at 3080.804 kb on + strand, within Pf6N2E2_2621at 3080.805 kb on - strand, within Pf6N2E2_2621at 3080.823 kb on + strand, within Pf6N2E2_2621at 3080.823 kb on + strand, within Pf6N2E2_2621at 3080.823 kb on + strand, within Pf6N2E2_2621at 3080.823 kb on + strand, within Pf6N2E2_2621at 3080.823 kb on + strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.824 kb on - strand, within Pf6N2E2_2621at 3080.827 kb on + strand, within Pf6N2E2_2621at 3080.827 kb on + strand, within Pf6N2E2_2621at 3080.827 kb on + strand, within Pf6N2E2_2621at 3080.827 kb on + strand, within Pf6N2E2_2621at 3080.828 kb on - strand, within Pf6N2E2_2621at 3080.828 kb on - strand, within Pf6N2E2_2621at 3080.878 kb on + strand, within Pf6N2E2_2621at 3080.878 kb on + strand, within Pf6N2E2_2621at 3080.879 kb on - strand, within Pf6N2E2_2621at 3080.985 kb on - strand, within Pf6N2E2_2621at 3080.985 kb on - strand, within Pf6N2E2_2621at 3081.178 kb on + strand, within Pf6N2E2_2621at 3081.179 kb on - strand, within Pf6N2E2_2621at 3081.247 kb on + strand, within Pf6N2E2_2621at 3081.247 kb on + strand, within Pf6N2E2_2621at 3081.247 kb on + strand, within Pf6N2E2_2621at 3081.248 kb on - strand, within Pf6N2E2_2621at 3081.248 kb on - strand, within Pf6N2E2_2621at 3081.248 kb on - strand, within Pf6N2E2_2621at 3081.248 kb on - strand, within Pf6N2E2_2621at 3081.248 kb on - strand, within Pf6N2E2_2621at 3081.622 kb on + strandat 3081.854 kb on + strandat 3081.854 kb on + strandat 3081.854 kb on + strandat 3081.855 kb on - strandat 3081.855 kb on - strandat 3081.954 kb on - strandat 3082.190 kb on + strand, within Pf6N2E2_2622at 3082.297 kb on + strand, within Pf6N2E2_2622at 3082.418 kb on + strand, within Pf6N2E2_2622at 3082.419 kb on - strand, within Pf6N2E2_2622at 3082.437 kb on - strand, within Pf6N2E2_2622at 3082.437 kb on - strand, within Pf6N2E2_2622at 3082.453 kb on + strand, within Pf6N2E2_2622at 3082.454 kb on - strand, within Pf6N2E2_2622at 3082.669 kb on + strand, within Pf6N2E2_2622at 3082.669 kb on + strand, within Pf6N2E2_2622at 3082.670 kb on - strand, within Pf6N2E2_2622at 3082.831 kb on + strand, within Pf6N2E2_2622at 3082.870 kb on - strand, within Pf6N2E2_2622

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,077,674 + Pf6N2E2_2619 0.52 +1.9
3,077,674 + Pf6N2E2_2619 0.52 +1.7
3,077,675 - Pf6N2E2_2619 0.52 +1.0
3,077,788 + Pf6N2E2_2619 0.67 +1.3
3,077,788 + Pf6N2E2_2619 0.67 -0.2
3,077,788 + Pf6N2E2_2619 0.67 +1.3
3,077,822 + Pf6N2E2_2619 0.71 -0.4
3,077,823 - Pf6N2E2_2619 0.72 -1.8
3,077,854 + Pf6N2E2_2619 0.76 +1.5
3,077,854 + Pf6N2E2_2619 0.76 -0.9
3,077,855 - Pf6N2E2_2619 0.76 +0.2
3,077,881 + Pf6N2E2_2619 0.79 +2.0
3,077,882 - Pf6N2E2_2619 0.79 +0.4
3,077,891 - Pf6N2E2_2619 0.81 +0.9
3,077,891 - Pf6N2E2_2619 0.81 -0.0
3,077,891 - Pf6N2E2_2619 0.81 -0.9
3,078,041 + +2.2
3,078,042 - -0.4
3,078,119 - -0.2
3,078,170 - +0.5
3,078,177 + +0.4
3,078,178 - +0.0
3,078,265 - +0.5
3,078,282 - +0.7
3,078,378 + Pf6N2E2_2620 0.22 +3.0
3,078,378 + Pf6N2E2_2620 0.22 +1.0
3,078,378 + Pf6N2E2_2620 0.22 +1.3
3,078,378 + Pf6N2E2_2620 0.22 +1.1
3,078,378 + Pf6N2E2_2620 0.22 +2.0
3,078,378 + Pf6N2E2_2620 0.22 +1.4
3,078,379 - Pf6N2E2_2620 0.22 -1.0
3,078,379 - Pf6N2E2_2620 0.22 +2.6
3,078,420 + Pf6N2E2_2620 0.39 -0.3
3,078,421 - Pf6N2E2_2620 0.39 -0.2
3,078,421 - Pf6N2E2_2620 0.39 +1.5
3,078,424 + Pf6N2E2_2620 0.41 +2.0
3,078,424 + Pf6N2E2_2620 0.41 +2.2
3,078,496 + Pf6N2E2_2620 0.69 -0.4
3,078,660 + +1.6
3,078,661 - +2.5
3,078,697 + -0.4
3,078,697 + +2.3
3,078,698 - +2.9
3,078,698 - +0.6
3,078,698 - +1.9
3,078,698 - -0.1
3,078,841 - +1.6
3,079,052 + Pf6N2E2_2621 0.13 -0.8
3,079,053 - Pf6N2E2_2621 0.13 +1.2
3,079,053 - Pf6N2E2_2621 0.13 -0.7
3,079,053 - Pf6N2E2_2621 0.13 +2.5
3,079,144 + Pf6N2E2_2621 0.16 +2.2
3,079,152 + Pf6N2E2_2621 0.16 +1.0
3,079,297 + Pf6N2E2_2621 0.20 -0.2
3,079,298 - Pf6N2E2_2621 0.20 +1.0
3,079,298 - Pf6N2E2_2621 0.20 -0.2
3,079,298 - Pf6N2E2_2621 0.20 -1.2
3,079,298 - Pf6N2E2_2621 0.20 -1.9
3,079,298 - Pf6N2E2_2621 0.20 +0.6
3,079,298 - Pf6N2E2_2621 0.20 -1.8
3,079,298 - Pf6N2E2_2621 0.20 +1.9
3,079,603 - Pf6N2E2_2621 0.30 +1.9
3,079,603 - Pf6N2E2_2621 0.30 +1.8
3,079,730 + Pf6N2E2_2621 0.34 +0.8
3,079,730 + Pf6N2E2_2621 0.34 +1.1
3,079,731 - Pf6N2E2_2621 0.34 +2.2
3,079,804 + Pf6N2E2_2621 0.36 -0.3
3,079,805 - Pf6N2E2_2621 0.36 +1.3
3,079,805 - Pf6N2E2_2621 0.36 +1.1
3,079,805 - Pf6N2E2_2621 0.36 +1.7
3,079,805 - Pf6N2E2_2621 0.36 +2.3
3,079,903 + Pf6N2E2_2621 0.39 +1.0
3,079,910 + Pf6N2E2_2621 0.39 +0.8
3,079,910 + Pf6N2E2_2621 0.39 +1.9
3,079,941 + Pf6N2E2_2621 0.40 +0.8
3,079,942 - Pf6N2E2_2621 0.40 +1.3
3,080,084 + Pf6N2E2_2621 0.44 +1.1
3,080,085 - Pf6N2E2_2621 0.44 +1.1
3,080,164 + Pf6N2E2_2621 0.47 -0.5
3,080,164 + Pf6N2E2_2621 0.47 +3.2
3,080,164 + Pf6N2E2_2621 0.47 +0.2
3,080,164 + Pf6N2E2_2621 0.47 -0.3
3,080,186 + Pf6N2E2_2621 0.48 +3.0
3,080,486 + Pf6N2E2_2621 0.57 +1.7
3,080,577 - Pf6N2E2_2621 0.60 -0.7
3,080,667 - Pf6N2E2_2621 0.62 +0.8
3,080,667 - Pf6N2E2_2621 0.62 +1.7
3,080,667 - Pf6N2E2_2621 0.62 +2.5
3,080,667 - Pf6N2E2_2621 0.62 -0.0
3,080,667 - Pf6N2E2_2621 0.62 +1.0
3,080,704 - Pf6N2E2_2621 0.63 +1.5
3,080,733 - Pf6N2E2_2621 0.64 +0.4
3,080,733 - Pf6N2E2_2621 0.64 +1.9
3,080,804 + Pf6N2E2_2621 0.67 +1.6
3,080,804 + Pf6N2E2_2621 0.67 +0.6
3,080,805 - Pf6N2E2_2621 0.67 -1.6
3,080,823 + Pf6N2E2_2621 0.67 +3.7
3,080,823 + Pf6N2E2_2621 0.67 +1.4
3,080,823 + Pf6N2E2_2621 0.67 +1.9
3,080,823 + Pf6N2E2_2621 0.67 +2.8
3,080,823 + Pf6N2E2_2621 0.67 +2.6
3,080,824 - Pf6N2E2_2621 0.67 +2.0
3,080,824 - Pf6N2E2_2621 0.67 -0.5
3,080,824 - Pf6N2E2_2621 0.67 -0.0
3,080,824 - Pf6N2E2_2621 0.67 +0.3
3,080,824 - Pf6N2E2_2621 0.67 +1.3
3,080,824 - Pf6N2E2_2621 0.67 +3.4
3,080,824 - Pf6N2E2_2621 0.67 +2.4
3,080,827 + Pf6N2E2_2621 0.67 +1.3
3,080,827 + Pf6N2E2_2621 0.67 +2.1
3,080,827 + Pf6N2E2_2621 0.67 -1.9
3,080,827 + Pf6N2E2_2621 0.67 +0.9
3,080,828 - Pf6N2E2_2621 0.67 +1.1
3,080,828 - Pf6N2E2_2621 0.67 -1.0
3,080,878 + Pf6N2E2_2621 0.69 +3.1
3,080,878 + Pf6N2E2_2621 0.69 +2.5
3,080,879 - Pf6N2E2_2621 0.69 -0.9
3,080,985 - Pf6N2E2_2621 0.72 +2.1
3,080,985 - Pf6N2E2_2621 0.72 +0.7
3,081,178 + Pf6N2E2_2621 0.78 +0.4
3,081,179 - Pf6N2E2_2621 0.78 +2.2
3,081,247 + Pf6N2E2_2621 0.80 +1.6
3,081,247 + Pf6N2E2_2621 0.80 +1.6
3,081,247 + Pf6N2E2_2621 0.80 +0.1
3,081,248 - Pf6N2E2_2621 0.80 +1.6
3,081,248 - Pf6N2E2_2621 0.80 -0.1
3,081,248 - Pf6N2E2_2621 0.80 +1.3
3,081,248 - Pf6N2E2_2621 0.80 +0.7
3,081,248 - Pf6N2E2_2621 0.80 +0.5
3,081,622 + +0.9
3,081,854 + +1.2
3,081,854 + +1.1
3,081,854 + -0.8
3,081,855 - +1.1
3,081,855 - +0.7
3,081,954 - +0.6
3,082,190 + Pf6N2E2_2622 0.13 -3.1
3,082,297 + Pf6N2E2_2622 0.20 -1.6
3,082,418 + Pf6N2E2_2622 0.27 -1.6
3,082,419 - Pf6N2E2_2622 0.27 -3.5
3,082,437 - Pf6N2E2_2622 0.29 -2.7
3,082,437 - Pf6N2E2_2622 0.29 -3.4
3,082,453 + Pf6N2E2_2622 0.30 -2.4
3,082,454 - Pf6N2E2_2622 0.30 -2.1
3,082,669 + Pf6N2E2_2622 0.43 -2.1
3,082,669 + Pf6N2E2_2622 0.43 -3.1
3,082,670 - Pf6N2E2_2622 0.43 -3.1
3,082,831 + Pf6N2E2_2622 0.54 -2.5
3,082,870 - Pf6N2E2_2622 0.56 -3.1

Or see this region's nucleotide sequence