Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2619 and Pf6N2E2_2620 are separated by 284 nucleotides Pf6N2E2_2620 and Pf6N2E2_2621 are separated by 65 nucleotides Pf6N2E2_2621 and Pf6N2E2_2622 are separated by 94 nucleotides
Pf6N2E2_2619 - Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33), at 3,077,280 to 3,078,038
_2619
Pf6N2E2_2620 - O-antigen biosynthesis protein, at 3,078,323 to 3,078,571
_2620
Pf6N2E2_2621 - glycosyl transferase, group 2 family protein, at 3,078,637 to 3,081,894
_2621
Pf6N2E2_2622 - Flagellar hook-associated protein FlgL, at 3,081,989 to 3,083,554
_2622
Position (kb)
3078
3079
3080
3081
3082 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3077.674 kb on + strand, within Pf6N2E2_2619 at 3077.674 kb on + strand, within Pf6N2E2_2619 at 3077.675 kb on - strand, within Pf6N2E2_2619 at 3077.788 kb on + strand, within Pf6N2E2_2619 at 3077.788 kb on + strand, within Pf6N2E2_2619 at 3077.788 kb on + strand, within Pf6N2E2_2619 at 3077.822 kb on + strand, within Pf6N2E2_2619 at 3077.823 kb on - strand, within Pf6N2E2_2619 at 3077.854 kb on + strand, within Pf6N2E2_2619 at 3077.854 kb on + strand, within Pf6N2E2_2619 at 3077.855 kb on - strand, within Pf6N2E2_2619 at 3077.881 kb on + strand, within Pf6N2E2_2619 at 3077.882 kb on - strand, within Pf6N2E2_2619 at 3077.891 kb on - strand, within Pf6N2E2_2619 at 3077.891 kb on - strand, within Pf6N2E2_2619 at 3077.891 kb on - strand, within Pf6N2E2_2619 at 3078.041 kb on + strand at 3078.042 kb on - strand at 3078.119 kb on - strand at 3078.170 kb on - strand at 3078.177 kb on + strand at 3078.178 kb on - strand at 3078.265 kb on - strand at 3078.282 kb on - strand at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.378 kb on + strand, within Pf6N2E2_2620 at 3078.379 kb on - strand, within Pf6N2E2_2620 at 3078.379 kb on - strand, within Pf6N2E2_2620 at 3078.420 kb on + strand, within Pf6N2E2_2620 at 3078.421 kb on - strand, within Pf6N2E2_2620 at 3078.421 kb on - strand, within Pf6N2E2_2620 at 3078.424 kb on + strand, within Pf6N2E2_2620 at 3078.424 kb on + strand, within Pf6N2E2_2620 at 3078.496 kb on + strand, within Pf6N2E2_2620 at 3078.660 kb on + strand at 3078.661 kb on - strand at 3078.697 kb on + strand at 3078.697 kb on + strand at 3078.698 kb on - strand at 3078.698 kb on - strand at 3078.698 kb on - strand at 3078.698 kb on - strand at 3078.841 kb on - strand at 3079.052 kb on + strand, within Pf6N2E2_2621 at 3079.053 kb on - strand, within Pf6N2E2_2621 at 3079.053 kb on - strand, within Pf6N2E2_2621 at 3079.053 kb on - strand, within Pf6N2E2_2621 at 3079.144 kb on + strand, within Pf6N2E2_2621 at 3079.152 kb on + strand, within Pf6N2E2_2621 at 3079.297 kb on + strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.298 kb on - strand, within Pf6N2E2_2621 at 3079.603 kb on - strand, within Pf6N2E2_2621 at 3079.603 kb on - strand, within Pf6N2E2_2621 at 3079.730 kb on + strand, within Pf6N2E2_2621 at 3079.730 kb on + strand, within Pf6N2E2_2621 at 3079.731 kb on - strand, within Pf6N2E2_2621 at 3079.804 kb on + strand, within Pf6N2E2_2621 at 3079.805 kb on - strand, within Pf6N2E2_2621 at 3079.805 kb on - strand, within Pf6N2E2_2621 at 3079.805 kb on - strand, within Pf6N2E2_2621 at 3079.805 kb on - strand, within Pf6N2E2_2621 at 3079.903 kb on + strand, within Pf6N2E2_2621 at 3079.910 kb on + strand, within Pf6N2E2_2621 at 3079.910 kb on + strand, within Pf6N2E2_2621 at 3079.941 kb on + strand, within Pf6N2E2_2621 at 3079.942 kb on - strand, within Pf6N2E2_2621 at 3080.084 kb on + strand, within Pf6N2E2_2621 at 3080.085 kb on - strand, within Pf6N2E2_2621 at 3080.164 kb on + strand, within Pf6N2E2_2621 at 3080.164 kb on + strand, within Pf6N2E2_2621 at 3080.164 kb on + strand, within Pf6N2E2_2621 at 3080.164 kb on + strand, within Pf6N2E2_2621 at 3080.186 kb on + strand, within Pf6N2E2_2621 at 3080.486 kb on + strand, within Pf6N2E2_2621 at 3080.577 kb on - strand, within Pf6N2E2_2621 at 3080.667 kb on - strand, within Pf6N2E2_2621 at 3080.667 kb on - strand, within Pf6N2E2_2621 at 3080.667 kb on - strand, within Pf6N2E2_2621 at 3080.667 kb on - strand, within Pf6N2E2_2621 at 3080.667 kb on - strand, within Pf6N2E2_2621 at 3080.704 kb on - strand, within Pf6N2E2_2621 at 3080.733 kb on - strand, within Pf6N2E2_2621 at 3080.733 kb on - strand, within Pf6N2E2_2621 at 3080.804 kb on + strand, within Pf6N2E2_2621 at 3080.804 kb on + strand, within Pf6N2E2_2621 at 3080.805 kb on - strand, within Pf6N2E2_2621 at 3080.823 kb on + strand, within Pf6N2E2_2621 at 3080.823 kb on + strand, within Pf6N2E2_2621 at 3080.823 kb on + strand, within Pf6N2E2_2621 at 3080.823 kb on + strand, within Pf6N2E2_2621 at 3080.823 kb on + strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.824 kb on - strand, within Pf6N2E2_2621 at 3080.827 kb on + strand, within Pf6N2E2_2621 at 3080.827 kb on + strand, within Pf6N2E2_2621 at 3080.827 kb on + strand, within Pf6N2E2_2621 at 3080.827 kb on + strand, within Pf6N2E2_2621 at 3080.828 kb on - strand, within Pf6N2E2_2621 at 3080.828 kb on - strand, within Pf6N2E2_2621 at 3080.878 kb on + strand, within Pf6N2E2_2621 at 3080.878 kb on + strand, within Pf6N2E2_2621 at 3080.879 kb on - strand, within Pf6N2E2_2621 at 3080.985 kb on - strand, within Pf6N2E2_2621 at 3080.985 kb on - strand, within Pf6N2E2_2621 at 3081.178 kb on + strand, within Pf6N2E2_2621 at 3081.179 kb on - strand, within Pf6N2E2_2621 at 3081.247 kb on + strand, within Pf6N2E2_2621 at 3081.247 kb on + strand, within Pf6N2E2_2621 at 3081.247 kb on + strand, within Pf6N2E2_2621 at 3081.248 kb on - strand, within Pf6N2E2_2621 at 3081.248 kb on - strand, within Pf6N2E2_2621 at 3081.248 kb on - strand, within Pf6N2E2_2621 at 3081.248 kb on - strand, within Pf6N2E2_2621 at 3081.248 kb on - strand, within Pf6N2E2_2621 at 3081.622 kb on + strand at 3081.854 kb on + strand at 3081.854 kb on + strand at 3081.854 kb on + strand at 3081.855 kb on - strand at 3081.855 kb on - strand at 3081.954 kb on - strand at 3082.190 kb on + strand, within Pf6N2E2_2622 at 3082.297 kb on + strand, within Pf6N2E2_2622 at 3082.418 kb on + strand, within Pf6N2E2_2622 at 3082.419 kb on - strand, within Pf6N2E2_2622 at 3082.437 kb on - strand, within Pf6N2E2_2622 at 3082.437 kb on - strand, within Pf6N2E2_2622 at 3082.453 kb on + strand, within Pf6N2E2_2622 at 3082.454 kb on - strand, within Pf6N2E2_2622 at 3082.669 kb on + strand, within Pf6N2E2_2622 at 3082.669 kb on + strand, within Pf6N2E2_2622 at 3082.670 kb on - strand, within Pf6N2E2_2622 at 3082.831 kb on + strand, within Pf6N2E2_2622 at 3082.870 kb on - strand, within Pf6N2E2_2622
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 3,077,674 + Pf6N2E2_2619 0.52 +1.9 3,077,674 + Pf6N2E2_2619 0.52 +1.7 3,077,675 - Pf6N2E2_2619 0.52 +1.0 3,077,788 + Pf6N2E2_2619 0.67 +1.3 3,077,788 + Pf6N2E2_2619 0.67 -0.2 3,077,788 + Pf6N2E2_2619 0.67 +1.3 3,077,822 + Pf6N2E2_2619 0.71 -0.4 3,077,823 - Pf6N2E2_2619 0.72 -1.8 3,077,854 + Pf6N2E2_2619 0.76 +1.5 3,077,854 + Pf6N2E2_2619 0.76 -0.9 3,077,855 - Pf6N2E2_2619 0.76 +0.2 3,077,881 + Pf6N2E2_2619 0.79 +2.0 3,077,882 - Pf6N2E2_2619 0.79 +0.4 3,077,891 - Pf6N2E2_2619 0.81 +0.9 3,077,891 - Pf6N2E2_2619 0.81 -0.0 3,077,891 - Pf6N2E2_2619 0.81 -0.9 3,078,041 + +2.2 3,078,042 - -0.4 3,078,119 - -0.2 3,078,170 - +0.5 3,078,177 + +0.4 3,078,178 - +0.0 3,078,265 - +0.5 3,078,282 - +0.7 3,078,378 + Pf6N2E2_2620 0.22 +3.0 3,078,378 + Pf6N2E2_2620 0.22 +1.0 3,078,378 + Pf6N2E2_2620 0.22 +1.3 3,078,378 + Pf6N2E2_2620 0.22 +1.1 3,078,378 + Pf6N2E2_2620 0.22 +2.0 3,078,378 + Pf6N2E2_2620 0.22 +1.4 3,078,379 - Pf6N2E2_2620 0.22 -1.0 3,078,379 - Pf6N2E2_2620 0.22 +2.6 3,078,420 + Pf6N2E2_2620 0.39 -0.3 3,078,421 - Pf6N2E2_2620 0.39 -0.2 3,078,421 - Pf6N2E2_2620 0.39 +1.5 3,078,424 + Pf6N2E2_2620 0.41 +2.0 3,078,424 + Pf6N2E2_2620 0.41 +2.2 3,078,496 + Pf6N2E2_2620 0.69 -0.4 3,078,660 + +1.6 3,078,661 - +2.5 3,078,697 + -0.4 3,078,697 + +2.3 3,078,698 - +2.9 3,078,698 - +0.6 3,078,698 - +1.9 3,078,698 - -0.1 3,078,841 - +1.6 3,079,052 + Pf6N2E2_2621 0.13 -0.8 3,079,053 - Pf6N2E2_2621 0.13 +1.2 3,079,053 - Pf6N2E2_2621 0.13 -0.7 3,079,053 - Pf6N2E2_2621 0.13 +2.5 3,079,144 + Pf6N2E2_2621 0.16 +2.2 3,079,152 + Pf6N2E2_2621 0.16 +1.0 3,079,297 + Pf6N2E2_2621 0.20 -0.2 3,079,298 - Pf6N2E2_2621 0.20 +1.0 3,079,298 - Pf6N2E2_2621 0.20 -0.2 3,079,298 - Pf6N2E2_2621 0.20 -1.2 3,079,298 - Pf6N2E2_2621 0.20 -1.9 3,079,298 - Pf6N2E2_2621 0.20 +0.6 3,079,298 - Pf6N2E2_2621 0.20 -1.8 3,079,298 - Pf6N2E2_2621 0.20 +1.9 3,079,603 - Pf6N2E2_2621 0.30 +1.9 3,079,603 - Pf6N2E2_2621 0.30 +1.8 3,079,730 + Pf6N2E2_2621 0.34 +0.8 3,079,730 + Pf6N2E2_2621 0.34 +1.1 3,079,731 - Pf6N2E2_2621 0.34 +2.2 3,079,804 + Pf6N2E2_2621 0.36 -0.3 3,079,805 - Pf6N2E2_2621 0.36 +1.3 3,079,805 - Pf6N2E2_2621 0.36 +1.1 3,079,805 - Pf6N2E2_2621 0.36 +1.7 3,079,805 - Pf6N2E2_2621 0.36 +2.3 3,079,903 + Pf6N2E2_2621 0.39 +1.0 3,079,910 + Pf6N2E2_2621 0.39 +0.8 3,079,910 + Pf6N2E2_2621 0.39 +1.9 3,079,941 + Pf6N2E2_2621 0.40 +0.8 3,079,942 - Pf6N2E2_2621 0.40 +1.3 3,080,084 + Pf6N2E2_2621 0.44 +1.1 3,080,085 - Pf6N2E2_2621 0.44 +1.1 3,080,164 + Pf6N2E2_2621 0.47 -0.5 3,080,164 + Pf6N2E2_2621 0.47 +3.2 3,080,164 + Pf6N2E2_2621 0.47 +0.2 3,080,164 + Pf6N2E2_2621 0.47 -0.3 3,080,186 + Pf6N2E2_2621 0.48 +3.0 3,080,486 + Pf6N2E2_2621 0.57 +1.7 3,080,577 - Pf6N2E2_2621 0.60 -0.7 3,080,667 - Pf6N2E2_2621 0.62 +0.8 3,080,667 - Pf6N2E2_2621 0.62 +1.7 3,080,667 - Pf6N2E2_2621 0.62 +2.5 3,080,667 - Pf6N2E2_2621 0.62 -0.0 3,080,667 - Pf6N2E2_2621 0.62 +1.0 3,080,704 - Pf6N2E2_2621 0.63 +1.5 3,080,733 - Pf6N2E2_2621 0.64 +0.4 3,080,733 - Pf6N2E2_2621 0.64 +1.9 3,080,804 + Pf6N2E2_2621 0.67 +1.6 3,080,804 + Pf6N2E2_2621 0.67 +0.6 3,080,805 - Pf6N2E2_2621 0.67 -1.6 3,080,823 + Pf6N2E2_2621 0.67 +3.7 3,080,823 + Pf6N2E2_2621 0.67 +1.4 3,080,823 + Pf6N2E2_2621 0.67 +1.9 3,080,823 + Pf6N2E2_2621 0.67 +2.8 3,080,823 + Pf6N2E2_2621 0.67 +2.6 3,080,824 - Pf6N2E2_2621 0.67 +2.0 3,080,824 - Pf6N2E2_2621 0.67 -0.5 3,080,824 - Pf6N2E2_2621 0.67 -0.0 3,080,824 - Pf6N2E2_2621 0.67 +0.3 3,080,824 - Pf6N2E2_2621 0.67 +1.3 3,080,824 - Pf6N2E2_2621 0.67 +3.4 3,080,824 - Pf6N2E2_2621 0.67 +2.4 3,080,827 + Pf6N2E2_2621 0.67 +1.3 3,080,827 + Pf6N2E2_2621 0.67 +2.1 3,080,827 + Pf6N2E2_2621 0.67 -1.9 3,080,827 + Pf6N2E2_2621 0.67 +0.9 3,080,828 - Pf6N2E2_2621 0.67 +1.1 3,080,828 - Pf6N2E2_2621 0.67 -1.0 3,080,878 + Pf6N2E2_2621 0.69 +3.1 3,080,878 + Pf6N2E2_2621 0.69 +2.5 3,080,879 - Pf6N2E2_2621 0.69 -0.9 3,080,985 - Pf6N2E2_2621 0.72 +2.1 3,080,985 - Pf6N2E2_2621 0.72 +0.7 3,081,178 + Pf6N2E2_2621 0.78 +0.4 3,081,179 - Pf6N2E2_2621 0.78 +2.2 3,081,247 + Pf6N2E2_2621 0.80 +1.6 3,081,247 + Pf6N2E2_2621 0.80 +1.6 3,081,247 + Pf6N2E2_2621 0.80 +0.1 3,081,248 - Pf6N2E2_2621 0.80 +1.6 3,081,248 - Pf6N2E2_2621 0.80 -0.1 3,081,248 - Pf6N2E2_2621 0.80 +1.3 3,081,248 - Pf6N2E2_2621 0.80 +0.7 3,081,248 - Pf6N2E2_2621 0.80 +0.5 3,081,622 + +0.9 3,081,854 + +1.2 3,081,854 + +1.1 3,081,854 + -0.8 3,081,855 - +1.1 3,081,855 - +0.7 3,081,954 - +0.6 3,082,190 + Pf6N2E2_2622 0.13 -3.1 3,082,297 + Pf6N2E2_2622 0.20 -1.6 3,082,418 + Pf6N2E2_2622 0.27 -1.6 3,082,419 - Pf6N2E2_2622 0.27 -3.5 3,082,437 - Pf6N2E2_2622 0.29 -2.7 3,082,437 - Pf6N2E2_2622 0.29 -3.4 3,082,453 + Pf6N2E2_2622 0.30 -2.4 3,082,454 - Pf6N2E2_2622 0.30 -2.1 3,082,669 + Pf6N2E2_2622 0.43 -2.1 3,082,669 + Pf6N2E2_2622 0.43 -3.1 3,082,670 - Pf6N2E2_2622 0.43 -3.1 3,082,831 + Pf6N2E2_2622 0.54 -2.5 3,082,870 - Pf6N2E2_2622 0.56 -3.1
Or see this region's nucleotide sequence