Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2600 and Pf6N2E2_2601 are separated by 82 nucleotides Pf6N2E2_2601 and Pf6N2E2_2602 are separated by 66 nucleotides Pf6N2E2_2602 and Pf6N2E2_2603 are separated by 249 nucleotides Pf6N2E2_2603 and Pf6N2E2_2604 are separated by 83 nucleotides
Pf6N2E2_2600 - Flagellar hook-associated protein FliD, at 3,057,526 to 3,058,959
_2600
Pf6N2E2_2601 - Flagellin protein FlaG, at 3,059,042 to 3,059,413
_2601
Pf6N2E2_2602 - Flagellin protein FlaA, at 3,059,480 to 3,060,331
_2602
Pf6N2E2_2603 - hypothetical protein, at 3,060,581 to 3,060,763
_2603
Pf6N2E2_2604 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 3,060,847 to 3,062,139
_2604
Position (kb)
3059
3060
3061 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 3058.482 kb on + strand, within Pf6N2E2_2600 at 3058.482 kb on + strand, within Pf6N2E2_2600 at 3058.483 kb on - strand, within Pf6N2E2_2600 at 3058.508 kb on - strand, within Pf6N2E2_2600 at 3058.508 kb on - strand, within Pf6N2E2_2600 at 3058.528 kb on - strand, within Pf6N2E2_2600 at 3058.539 kb on - strand, within Pf6N2E2_2600 at 3058.545 kb on + strand, within Pf6N2E2_2600 at 3058.545 kb on + strand, within Pf6N2E2_2600 at 3058.580 kb on - strand, within Pf6N2E2_2600 at 3058.658 kb on + strand, within Pf6N2E2_2600 at 3058.658 kb on + strand, within Pf6N2E2_2600 at 3058.658 kb on + strand, within Pf6N2E2_2600 at 3058.658 kb on + strand, within Pf6N2E2_2600 at 3058.659 kb on - strand, within Pf6N2E2_2600 at 3058.734 kb on + strand, within Pf6N2E2_2600 at 3058.821 kb on + strand at 3058.822 kb on - strand at 3058.903 kb on - strand at 3058.928 kb on - strand at 3058.942 kb on + strand at 3059.000 kb on - strand at 3059.000 kb on - strand at 3059.000 kb on - strand at 3059.019 kb on - strand at 3059.019 kb on - strand at 3059.019 kb on - strand at 3059.087 kb on - strand, within Pf6N2E2_2601 at 3059.159 kb on - strand, within Pf6N2E2_2601 at 3059.165 kb on + strand, within Pf6N2E2_2601 at 3059.165 kb on + strand at 3059.166 kb on - strand, within Pf6N2E2_2601 at 3059.166 kb on - strand, within Pf6N2E2_2601 at 3059.166 kb on - strand, within Pf6N2E2_2601 at 3059.188 kb on + strand, within Pf6N2E2_2601 at 3059.188 kb on + strand, within Pf6N2E2_2601 at 3059.189 kb on - strand, within Pf6N2E2_2601 at 3059.189 kb on - strand, within Pf6N2E2_2601 at 3059.189 kb on - strand, within Pf6N2E2_2601 at 3059.304 kb on - strand, within Pf6N2E2_2601 at 3059.304 kb on - strand, within Pf6N2E2_2601 at 3059.304 kb on - strand, within Pf6N2E2_2601 at 3059.402 kb on - strand at 3059.443 kb on - strand at 3059.478 kb on + strand at 3059.478 kb on + strand at 3059.479 kb on - strand at 3059.479 kb on - strand at 3059.479 kb on - strand at 3059.479 kb on - strand at 3059.479 kb on - strand at 3059.479 kb on - strand at 3059.481 kb on + strand at 3059.481 kb on + strand at 3059.482 kb on - strand at 3059.482 kb on - strand at 3059.482 kb on - strand at 3059.498 kb on + strand at 3059.498 kb on + strand at 3059.499 kb on - strand at 3059.606 kb on + strand, within Pf6N2E2_2602 at 3059.607 kb on - strand, within Pf6N2E2_2602 at 3059.607 kb on - strand, within Pf6N2E2_2602 at 3059.607 kb on - strand, within Pf6N2E2_2602 at 3059.666 kb on - strand, within Pf6N2E2_2602 at 3059.666 kb on - strand, within Pf6N2E2_2602 at 3059.899 kb on + strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3059.900 kb on - strand, within Pf6N2E2_2602 at 3060.059 kb on - strand, within Pf6N2E2_2602 at 3060.059 kb on - strand, within Pf6N2E2_2602 at 3060.059 kb on - strand, within Pf6N2E2_2602 at 3060.118 kb on + strand, within Pf6N2E2_2602 at 3060.118 kb on + strand, within Pf6N2E2_2602 at 3060.119 kb on - strand, within Pf6N2E2_2602 at 3060.119 kb on - strand, within Pf6N2E2_2602 at 3060.119 kb on - strand, within Pf6N2E2_2602 at 3060.172 kb on + strand, within Pf6N2E2_2602 at 3060.173 kb on - strand, within Pf6N2E2_2602 at 3060.317 kb on + strand at 3060.323 kb on + strand at 3060.393 kb on + strand at 3060.394 kb on - strand at 3060.407 kb on - strand at 3060.409 kb on + strand at 3060.409 kb on + strand at 3060.409 kb on + strand at 3060.410 kb on - strand at 3060.410 kb on - strand at 3060.410 kb on - strand at 3060.413 kb on + strand at 3060.414 kb on - strand at 3060.414 kb on - strand at 3060.437 kb on + strand at 3060.437 kb on + strand at 3060.505 kb on - strand at 3060.622 kb on - strand, within Pf6N2E2_2603 at 3060.622 kb on - strand, within Pf6N2E2_2603 at 3060.622 kb on - strand, within Pf6N2E2_2603 at 3060.631 kb on - strand, within Pf6N2E2_2603 at 3060.671 kb on + strand, within Pf6N2E2_2603 at 3060.671 kb on + strand, within Pf6N2E2_2603 at 3060.672 kb on - strand, within Pf6N2E2_2603 at 3060.672 kb on - strand, within Pf6N2E2_2603 at 3060.672 kb on - strand, within Pf6N2E2_2603 at 3060.672 kb on - strand, within Pf6N2E2_2603 at 3060.672 kb on - strand, within Pf6N2E2_2603 at 3060.686 kb on + strand, within Pf6N2E2_2603 at 3060.686 kb on + strand, within Pf6N2E2_2603 at 3060.687 kb on - strand, within Pf6N2E2_2603 at 3060.687 kb on - strand, within Pf6N2E2_2603 at 3060.687 kb on - strand, within Pf6N2E2_2603 at 3060.687 kb on - strand, within Pf6N2E2_2603 at 3060.687 kb on - strand, within Pf6N2E2_2603 at 3060.858 kb on - strand at 3060.858 kb on - strand at 3060.962 kb on + strand at 3060.962 kb on + strand at 3060.963 kb on - strand at 3061.174 kb on + strand, within Pf6N2E2_2604 at 3061.174 kb on + strand, within Pf6N2E2_2604 at 3061.175 kb on - strand, within Pf6N2E2_2604 at 3061.175 kb on - strand, within Pf6N2E2_2604 at 3061.217 kb on + strand, within Pf6N2E2_2604 at 3061.217 kb on + strand, within Pf6N2E2_2604 at 3061.218 kb on - strand, within Pf6N2E2_2604 at 3061.218 kb on - strand, within Pf6N2E2_2604 at 3061.218 kb on - strand, within Pf6N2E2_2604 at 3061.296 kb on - strand, within Pf6N2E2_2604
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 3,058,482 + Pf6N2E2_2600 0.67 -2.5 3,058,482 + Pf6N2E2_2600 0.67 -2.9 3,058,483 - Pf6N2E2_2600 0.67 -3.6 3,058,508 - Pf6N2E2_2600 0.68 +0.7 3,058,508 - Pf6N2E2_2600 0.68 -1.5 3,058,528 - Pf6N2E2_2600 0.70 -2.2 3,058,539 - Pf6N2E2_2600 0.71 -2.5 3,058,545 + Pf6N2E2_2600 0.71 -1.4 3,058,545 + Pf6N2E2_2600 0.71 -2.8 3,058,580 - Pf6N2E2_2600 0.74 -1.5 3,058,658 + Pf6N2E2_2600 0.79 -0.5 3,058,658 + Pf6N2E2_2600 0.79 -1.9 3,058,658 + Pf6N2E2_2600 0.79 -2.6 3,058,658 + Pf6N2E2_2600 0.79 -3.0 3,058,659 - Pf6N2E2_2600 0.79 -2.8 3,058,734 + Pf6N2E2_2600 0.84 -1.8 3,058,821 + -2.4 3,058,822 - -3.6 3,058,903 - -2.2 3,058,928 - -3.8 3,058,942 + -4.0 3,059,000 - +1.6 3,059,000 - +2.5 3,059,000 - +2.3 3,059,019 - +0.3 3,059,019 - +0.2 3,059,019 - +1.8 3,059,087 - Pf6N2E2_2601 0.12 +2.5 3,059,159 - Pf6N2E2_2601 0.31 +0.8 3,059,165 + Pf6N2E2_2601 0.33 +2.4 3,059,165 + +2.7 3,059,166 - Pf6N2E2_2601 0.33 +1.9 3,059,166 - Pf6N2E2_2601 0.33 -0.3 3,059,166 - Pf6N2E2_2601 0.33 +1.9 3,059,188 + Pf6N2E2_2601 0.39 +6.6 3,059,188 + Pf6N2E2_2601 0.39 +3.9 3,059,189 - Pf6N2E2_2601 0.40 +2.4 3,059,189 - Pf6N2E2_2601 0.40 +2.3 3,059,189 - Pf6N2E2_2601 0.40 +1.3 3,059,304 - Pf6N2E2_2601 0.70 +2.4 3,059,304 - Pf6N2E2_2601 0.70 +0.6 3,059,304 - Pf6N2E2_2601 0.70 +2.5 3,059,402 - +0.2 3,059,443 - +2.4 3,059,478 + +2.2 3,059,478 + +1.9 3,059,479 - +5.7 3,059,479 - +4.2 3,059,479 - +3.4 3,059,479 - +2.9 3,059,479 - +1.9 3,059,479 - +1.8 3,059,481 + +4.5 3,059,481 + +3.8 3,059,482 - +0.6 3,059,482 - +0.8 3,059,482 - +4.7 3,059,498 + -2.1 3,059,498 + -3.9 3,059,499 - -2.2 3,059,606 + Pf6N2E2_2602 0.15 -1.4 3,059,607 - Pf6N2E2_2602 0.15 -3.6 3,059,607 - Pf6N2E2_2602 0.15 -3.2 3,059,607 - Pf6N2E2_2602 0.15 -3.5 3,059,666 - Pf6N2E2_2602 0.22 -2.1 3,059,666 - Pf6N2E2_2602 0.22 -2.5 3,059,899 + Pf6N2E2_2602 0.49 -2.2 3,059,900 - Pf6N2E2_2602 0.49 -3.3 3,059,900 - Pf6N2E2_2602 0.49 -3.6 3,059,900 - Pf6N2E2_2602 0.49 -2.8 3,059,900 - Pf6N2E2_2602 0.49 -4.1 3,059,900 - Pf6N2E2_2602 0.49 -3.4 3,059,900 - Pf6N2E2_2602 0.49 -3.3 3,060,059 - Pf6N2E2_2602 0.68 -2.0 3,060,059 - Pf6N2E2_2602 0.68 -3.7 3,060,059 - Pf6N2E2_2602 0.68 -1.6 3,060,118 + Pf6N2E2_2602 0.75 -1.9 3,060,118 + Pf6N2E2_2602 0.75 -1.6 3,060,119 - Pf6N2E2_2602 0.75 -3.2 3,060,119 - Pf6N2E2_2602 0.75 -1.7 3,060,119 - Pf6N2E2_2602 0.75 -1.8 3,060,172 + Pf6N2E2_2602 0.81 -1.0 3,060,173 - Pf6N2E2_2602 0.81 -1.2 3,060,317 + -2.2 3,060,323 + +0.7 3,060,393 + -4.0 3,060,394 - -1.7 3,060,407 - +1.9 3,060,409 + -2.3 3,060,409 + -3.1 3,060,409 + -2.0 3,060,410 - -1.0 3,060,410 - +0.8 3,060,410 - +0.8 3,060,413 + -2.3 3,060,414 - -2.4 3,060,414 - -3.6 3,060,437 + -1.2 3,060,437 + +0.2 3,060,505 - -0.1 3,060,622 - Pf6N2E2_2603 0.22 -0.8 3,060,622 - Pf6N2E2_2603 0.22 +0.3 3,060,622 - Pf6N2E2_2603 0.22 -2.4 3,060,631 - Pf6N2E2_2603 0.27 -1.2 3,060,671 + Pf6N2E2_2603 0.49 +3.3 3,060,671 + Pf6N2E2_2603 0.49 +3.5 3,060,672 - Pf6N2E2_2603 0.50 -1.3 3,060,672 - Pf6N2E2_2603 0.50 -1.6 3,060,672 - Pf6N2E2_2603 0.50 -1.1 3,060,672 - Pf6N2E2_2603 0.50 +1.0 3,060,672 - Pf6N2E2_2603 0.50 -0.2 3,060,686 + Pf6N2E2_2603 0.57 +2.5 3,060,686 + Pf6N2E2_2603 0.57 +3.4 3,060,687 - Pf6N2E2_2603 0.58 -1.8 3,060,687 - Pf6N2E2_2603 0.58 +0.5 3,060,687 - Pf6N2E2_2603 0.58 -2.2 3,060,687 - Pf6N2E2_2603 0.58 +1.1 3,060,687 - Pf6N2E2_2603 0.58 +0.3 3,060,858 - +0.5 3,060,858 - +0.6 3,060,962 + +1.7 3,060,962 + +1.8 3,060,963 - -1.2 3,061,174 + Pf6N2E2_2604 0.25 +1.5 3,061,174 + Pf6N2E2_2604 0.25 -1.1 3,061,175 - Pf6N2E2_2604 0.25 -0.8 3,061,175 - Pf6N2E2_2604 0.25 -1.2 3,061,217 + Pf6N2E2_2604 0.29 +2.5 3,061,217 + Pf6N2E2_2604 0.29 -0.6 3,061,218 - Pf6N2E2_2604 0.29 +1.8 3,061,218 - Pf6N2E2_2604 0.29 -0.4 3,061,218 - Pf6N2E2_2604 0.29 +0.9 3,061,296 - Pf6N2E2_2604 0.35 +0.6
Or see this region's nucleotide sequence