Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2602

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2600 and Pf6N2E2_2601 are separated by 82 nucleotidesPf6N2E2_2601 and Pf6N2E2_2602 are separated by 66 nucleotidesPf6N2E2_2602 and Pf6N2E2_2603 are separated by 249 nucleotidesPf6N2E2_2603 and Pf6N2E2_2604 are separated by 83 nucleotides Pf6N2E2_2600 - Flagellar hook-associated protein FliD, at 3,057,526 to 3,058,959 _2600 Pf6N2E2_2601 - Flagellin protein FlaG, at 3,059,042 to 3,059,413 _2601 Pf6N2E2_2602 - Flagellin protein FlaA, at 3,059,480 to 3,060,331 _2602 Pf6N2E2_2603 - hypothetical protein, at 3,060,581 to 3,060,763 _2603 Pf6N2E2_2604 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 3,060,847 to 3,062,139 _2604 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3058.482 kb on + strand, within Pf6N2E2_2600at 3058.482 kb on + strand, within Pf6N2E2_2600at 3058.483 kb on - strand, within Pf6N2E2_2600at 3058.508 kb on - strand, within Pf6N2E2_2600at 3058.508 kb on - strand, within Pf6N2E2_2600at 3058.528 kb on - strand, within Pf6N2E2_2600at 3058.539 kb on - strand, within Pf6N2E2_2600at 3058.545 kb on + strand, within Pf6N2E2_2600at 3058.545 kb on + strand, within Pf6N2E2_2600at 3058.580 kb on - strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.658 kb on + strand, within Pf6N2E2_2600at 3058.659 kb on - strand, within Pf6N2E2_2600at 3058.734 kb on + strand, within Pf6N2E2_2600at 3058.821 kb on + strandat 3058.822 kb on - strandat 3058.903 kb on - strandat 3058.928 kb on - strandat 3058.942 kb on + strandat 3059.000 kb on - strandat 3059.000 kb on - strandat 3059.000 kb on - strandat 3059.019 kb on - strandat 3059.019 kb on - strandat 3059.019 kb on - strandat 3059.087 kb on - strand, within Pf6N2E2_2601at 3059.159 kb on - strand, within Pf6N2E2_2601at 3059.165 kb on + strand, within Pf6N2E2_2601at 3059.165 kb on + strandat 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.166 kb on - strand, within Pf6N2E2_2601at 3059.188 kb on + strand, within Pf6N2E2_2601at 3059.188 kb on + strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.189 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.304 kb on - strand, within Pf6N2E2_2601at 3059.402 kb on - strandat 3059.443 kb on - strandat 3059.478 kb on + strandat 3059.478 kb on + strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.479 kb on - strandat 3059.481 kb on + strandat 3059.481 kb on + strandat 3059.482 kb on - strandat 3059.482 kb on - strandat 3059.482 kb on - strandat 3059.498 kb on + strandat 3059.498 kb on + strandat 3059.499 kb on - strandat 3059.606 kb on + strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.607 kb on - strand, within Pf6N2E2_2602at 3059.666 kb on - strand, within Pf6N2E2_2602at 3059.666 kb on - strand, within Pf6N2E2_2602at 3059.899 kb on + strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3059.900 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.059 kb on - strand, within Pf6N2E2_2602at 3060.118 kb on + strand, within Pf6N2E2_2602at 3060.118 kb on + strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.119 kb on - strand, within Pf6N2E2_2602at 3060.172 kb on + strand, within Pf6N2E2_2602at 3060.173 kb on - strand, within Pf6N2E2_2602at 3060.317 kb on + strandat 3060.323 kb on + strandat 3060.393 kb on + strandat 3060.394 kb on - strandat 3060.407 kb on - strandat 3060.409 kb on + strandat 3060.409 kb on + strandat 3060.409 kb on + strandat 3060.410 kb on - strandat 3060.410 kb on - strandat 3060.410 kb on - strandat 3060.413 kb on + strandat 3060.414 kb on - strandat 3060.414 kb on - strandat 3060.437 kb on + strandat 3060.437 kb on + strandat 3060.505 kb on - strandat 3060.622 kb on - strand, within Pf6N2E2_2603at 3060.622 kb on - strand, within Pf6N2E2_2603at 3060.622 kb on - strand, within Pf6N2E2_2603at 3060.631 kb on - strand, within Pf6N2E2_2603at 3060.671 kb on + strand, within Pf6N2E2_2603at 3060.671 kb on + strand, within Pf6N2E2_2603at 3060.672 kb on - strand, within Pf6N2E2_2603at 3060.672 kb on - strand, within Pf6N2E2_2603at 3060.672 kb on - strand, within Pf6N2E2_2603at 3060.672 kb on - strand, within Pf6N2E2_2603at 3060.672 kb on - strand, within Pf6N2E2_2603at 3060.686 kb on + strand, within Pf6N2E2_2603at 3060.686 kb on + strand, within Pf6N2E2_2603at 3060.687 kb on - strand, within Pf6N2E2_2603at 3060.687 kb on - strand, within Pf6N2E2_2603at 3060.687 kb on - strand, within Pf6N2E2_2603at 3060.687 kb on - strand, within Pf6N2E2_2603at 3060.687 kb on - strand, within Pf6N2E2_2603at 3060.858 kb on - strandat 3060.858 kb on - strandat 3060.962 kb on + strandat 3060.962 kb on + strandat 3060.963 kb on - strandat 3061.174 kb on + strand, within Pf6N2E2_2604at 3061.174 kb on + strand, within Pf6N2E2_2604at 3061.175 kb on - strand, within Pf6N2E2_2604at 3061.175 kb on - strand, within Pf6N2E2_2604at 3061.217 kb on + strand, within Pf6N2E2_2604at 3061.217 kb on + strand, within Pf6N2E2_2604at 3061.218 kb on - strand, within Pf6N2E2_2604at 3061.218 kb on - strand, within Pf6N2E2_2604at 3061.218 kb on - strand, within Pf6N2E2_2604at 3061.296 kb on - strand, within Pf6N2E2_2604

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,058,482 + Pf6N2E2_2600 0.67 -2.5
3,058,482 + Pf6N2E2_2600 0.67 -2.9
3,058,483 - Pf6N2E2_2600 0.67 -3.6
3,058,508 - Pf6N2E2_2600 0.68 +0.7
3,058,508 - Pf6N2E2_2600 0.68 -1.5
3,058,528 - Pf6N2E2_2600 0.70 -2.2
3,058,539 - Pf6N2E2_2600 0.71 -2.5
3,058,545 + Pf6N2E2_2600 0.71 -1.4
3,058,545 + Pf6N2E2_2600 0.71 -2.8
3,058,580 - Pf6N2E2_2600 0.74 -1.5
3,058,658 + Pf6N2E2_2600 0.79 -0.5
3,058,658 + Pf6N2E2_2600 0.79 -1.9
3,058,658 + Pf6N2E2_2600 0.79 -2.6
3,058,658 + Pf6N2E2_2600 0.79 -3.0
3,058,659 - Pf6N2E2_2600 0.79 -2.8
3,058,734 + Pf6N2E2_2600 0.84 -1.8
3,058,821 + -2.4
3,058,822 - -3.6
3,058,903 - -2.2
3,058,928 - -3.8
3,058,942 + -4.0
3,059,000 - +1.6
3,059,000 - +2.5
3,059,000 - +2.3
3,059,019 - +0.3
3,059,019 - +0.2
3,059,019 - +1.8
3,059,087 - Pf6N2E2_2601 0.12 +2.5
3,059,159 - Pf6N2E2_2601 0.31 +0.8
3,059,165 + Pf6N2E2_2601 0.33 +2.4
3,059,165 + +2.7
3,059,166 - Pf6N2E2_2601 0.33 +1.9
3,059,166 - Pf6N2E2_2601 0.33 -0.3
3,059,166 - Pf6N2E2_2601 0.33 +1.9
3,059,188 + Pf6N2E2_2601 0.39 +6.6
3,059,188 + Pf6N2E2_2601 0.39 +3.9
3,059,189 - Pf6N2E2_2601 0.40 +2.4
3,059,189 - Pf6N2E2_2601 0.40 +2.3
3,059,189 - Pf6N2E2_2601 0.40 +1.3
3,059,304 - Pf6N2E2_2601 0.70 +2.4
3,059,304 - Pf6N2E2_2601 0.70 +0.6
3,059,304 - Pf6N2E2_2601 0.70 +2.5
3,059,402 - +0.2
3,059,443 - +2.4
3,059,478 + +2.2
3,059,478 + +1.9
3,059,479 - +5.7
3,059,479 - +4.2
3,059,479 - +3.4
3,059,479 - +2.9
3,059,479 - +1.9
3,059,479 - +1.8
3,059,481 + +4.5
3,059,481 + +3.8
3,059,482 - +0.6
3,059,482 - +0.8
3,059,482 - +4.7
3,059,498 + -2.1
3,059,498 + -3.9
3,059,499 - -2.2
3,059,606 + Pf6N2E2_2602 0.15 -1.4
3,059,607 - Pf6N2E2_2602 0.15 -3.6
3,059,607 - Pf6N2E2_2602 0.15 -3.2
3,059,607 - Pf6N2E2_2602 0.15 -3.5
3,059,666 - Pf6N2E2_2602 0.22 -2.1
3,059,666 - Pf6N2E2_2602 0.22 -2.5
3,059,899 + Pf6N2E2_2602 0.49 -2.2
3,059,900 - Pf6N2E2_2602 0.49 -3.3
3,059,900 - Pf6N2E2_2602 0.49 -3.6
3,059,900 - Pf6N2E2_2602 0.49 -2.8
3,059,900 - Pf6N2E2_2602 0.49 -4.1
3,059,900 - Pf6N2E2_2602 0.49 -3.4
3,059,900 - Pf6N2E2_2602 0.49 -3.3
3,060,059 - Pf6N2E2_2602 0.68 -2.0
3,060,059 - Pf6N2E2_2602 0.68 -3.7
3,060,059 - Pf6N2E2_2602 0.68 -1.6
3,060,118 + Pf6N2E2_2602 0.75 -1.9
3,060,118 + Pf6N2E2_2602 0.75 -1.6
3,060,119 - Pf6N2E2_2602 0.75 -3.2
3,060,119 - Pf6N2E2_2602 0.75 -1.7
3,060,119 - Pf6N2E2_2602 0.75 -1.8
3,060,172 + Pf6N2E2_2602 0.81 -1.0
3,060,173 - Pf6N2E2_2602 0.81 -1.2
3,060,317 + -2.2
3,060,323 + +0.7
3,060,393 + -4.0
3,060,394 - -1.7
3,060,407 - +1.9
3,060,409 + -2.3
3,060,409 + -3.1
3,060,409 + -2.0
3,060,410 - -1.0
3,060,410 - +0.8
3,060,410 - +0.8
3,060,413 + -2.3
3,060,414 - -2.4
3,060,414 - -3.6
3,060,437 + -1.2
3,060,437 + +0.2
3,060,505 - -0.1
3,060,622 - Pf6N2E2_2603 0.22 -0.8
3,060,622 - Pf6N2E2_2603 0.22 +0.3
3,060,622 - Pf6N2E2_2603 0.22 -2.4
3,060,631 - Pf6N2E2_2603 0.27 -1.2
3,060,671 + Pf6N2E2_2603 0.49 +3.3
3,060,671 + Pf6N2E2_2603 0.49 +3.5
3,060,672 - Pf6N2E2_2603 0.50 -1.3
3,060,672 - Pf6N2E2_2603 0.50 -1.6
3,060,672 - Pf6N2E2_2603 0.50 -1.1
3,060,672 - Pf6N2E2_2603 0.50 +1.0
3,060,672 - Pf6N2E2_2603 0.50 -0.2
3,060,686 + Pf6N2E2_2603 0.57 +2.5
3,060,686 + Pf6N2E2_2603 0.57 +3.4
3,060,687 - Pf6N2E2_2603 0.58 -1.8
3,060,687 - Pf6N2E2_2603 0.58 +0.5
3,060,687 - Pf6N2E2_2603 0.58 -2.2
3,060,687 - Pf6N2E2_2603 0.58 +1.1
3,060,687 - Pf6N2E2_2603 0.58 +0.3
3,060,858 - +0.5
3,060,858 - +0.6
3,060,962 + +1.7
3,060,962 + +1.8
3,060,963 - -1.2
3,061,174 + Pf6N2E2_2604 0.25 +1.5
3,061,174 + Pf6N2E2_2604 0.25 -1.1
3,061,175 - Pf6N2E2_2604 0.25 -0.8
3,061,175 - Pf6N2E2_2604 0.25 -1.2
3,061,217 + Pf6N2E2_2604 0.29 +2.5
3,061,217 + Pf6N2E2_2604 0.29 -0.6
3,061,218 - Pf6N2E2_2604 0.29 +1.8
3,061,218 - Pf6N2E2_2604 0.29 -0.4
3,061,218 - Pf6N2E2_2604 0.29 +0.9
3,061,296 - Pf6N2E2_2604 0.35 +0.6

Or see this region's nucleotide sequence