Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2563 and Pf6N2E2_2564 are separated by 1 nucleotides Pf6N2E2_2564 and Pf6N2E2_2565 are separated by 72 nucleotides Pf6N2E2_2565 and Pf6N2E2_2566 are separated by 33 nucleotides Pf6N2E2_2566 and Pf6N2E2_2567 are separated by 49 nucleotides
Pf6N2E2_2563 - FIG00953562: hypothetical protein, at 3,021,981 to 3,022,376
_2563
Pf6N2E2_2564 - Positive regulator of CheA protein activity (CheW), at 3,022,378 to 3,022,863
_2564
Pf6N2E2_2565 - CheW domain protein, at 3,022,936 to 3,023,874
_2565
Pf6N2E2_2566 - Chromosome (plasmid) partitioning protein ParA, at 3,023,908 to 3,024,699
_2566
Pf6N2E2_2567 - Flagellar motor rotation protein MotB, at 3,024,749 to 3,025,633
_2567
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.002 kb on - strand at 3022.002 kb on - strand at 3022.002 kb on - strand at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.363 kb on - strand at 3022.363 kb on - strand at 3022.363 kb on - strand at 3022.384 kb on - strand at 3022.384 kb on - strand at 3022.384 kb on - strand at 3022.539 kb on - strand, within Pf6N2E2_2564 at 3022.706 kb on + strand, within Pf6N2E2_2564 at 3022.707 kb on - strand, within Pf6N2E2_2564 at 3022.707 kb on - strand, within Pf6N2E2_2564 at 3022.741 kb on - strand, within Pf6N2E2_2564 at 3022.742 kb on + strand, within Pf6N2E2_2564 at 3022.742 kb on + strand, within Pf6N2E2_2564 at 3022.781 kb on + strand, within Pf6N2E2_2564 at 3022.781 kb on + strand, within Pf6N2E2_2564 at 3022.782 kb on - strand, within Pf6N2E2_2564 at 3022.782 kb on - strand, within Pf6N2E2_2564 at 3022.854 kb on + strand at 3022.854 kb on + strand at 3022.863 kb on + strand at 3022.864 kb on - strand at 3022.900 kb on + strand at 3022.900 kb on + strand at 3022.900 kb on + strand at 3022.900 kb on + strand at 3022.900 kb on + strand at 3022.900 kb on + strand at 3022.901 kb on - strand at 3022.901 kb on - strand at 3022.901 kb on - strand at 3022.937 kb on + strand at 3022.937 kb on + strand at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.037 kb on + strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.038 kb on - strand, within Pf6N2E2_2565 at 3023.052 kb on + strand, within Pf6N2E2_2565 at 3023.157 kb on - strand, within Pf6N2E2_2565 at 3023.177 kb on + strand, within Pf6N2E2_2565 at 3023.177 kb on + strand, within Pf6N2E2_2565 at 3023.178 kb on - strand, within Pf6N2E2_2565 at 3023.178 kb on - strand, within Pf6N2E2_2565 at 3023.606 kb on - strand, within Pf6N2E2_2565 at 3023.760 kb on - strand, within Pf6N2E2_2565 at 3023.760 kb on - strand, within Pf6N2E2_2565 at 3023.798 kb on - strand at 3023.811 kb on + strand at 3023.909 kb on + strand at 3024.055 kb on - strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.056 kb on + strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.057 kb on - strand, within Pf6N2E2_2566 at 3024.080 kb on + strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.081 kb on - strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.198 kb on + strand, within Pf6N2E2_2566 at 3024.199 kb on - strand, within Pf6N2E2_2566 at 3024.521 kb on + strand, within Pf6N2E2_2566 at 3024.560 kb on + strand, within Pf6N2E2_2566 at 3024.560 kb on + strand, within Pf6N2E2_2566 at 3024.741 kb on + strand at 3024.741 kb on + strand at 3024.750 kb on + strand at 3024.752 kb on + strand at 3024.753 kb on - strand at 3024.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 3,022,001 + -3.3 3,022,001 + -3.6 3,022,001 + +0.5 3,022,001 + -3.0 3,022,001 + -3.0 3,022,002 - -3.4 3,022,002 - -2.5 3,022,002 - -4.0 3,022,302 + Pf6N2E2_2563 0.81 -2.6 3,022,302 + Pf6N2E2_2563 0.81 -2.0 3,022,302 + Pf6N2E2_2563 0.81 -1.3 3,022,302 + Pf6N2E2_2563 0.81 -3.0 3,022,302 + Pf6N2E2_2563 0.81 -2.6 3,022,302 + Pf6N2E2_2563 0.81 -1.6 3,022,302 + Pf6N2E2_2563 0.81 -2.3 3,022,302 + Pf6N2E2_2563 0.81 -1.1 3,022,303 - Pf6N2E2_2563 0.81 -3.1 3,022,303 - Pf6N2E2_2563 0.81 -3.4 3,022,303 - Pf6N2E2_2563 0.81 -3.1 3,022,303 - Pf6N2E2_2563 0.81 -3.4 3,022,303 - Pf6N2E2_2563 0.81 -1.1 3,022,303 - Pf6N2E2_2563 0.81 -3.6 3,022,303 - Pf6N2E2_2563 0.81 -2.8 3,022,303 - Pf6N2E2_2563 0.81 -3.0 3,022,303 - Pf6N2E2_2563 0.81 -3.3 3,022,303 - Pf6N2E2_2563 0.81 -2.3 3,022,303 - Pf6N2E2_2563 0.81 -3.3 3,022,303 - Pf6N2E2_2563 0.81 -2.4 3,022,303 - Pf6N2E2_2563 0.81 -3.3 3,022,303 - Pf6N2E2_2563 0.81 -3.9 3,022,303 - Pf6N2E2_2563 0.81 -1.9 3,022,303 - Pf6N2E2_2563 0.81 -2.8 3,022,303 - Pf6N2E2_2563 0.81 -0.3 3,022,303 - Pf6N2E2_2563 0.81 -3.6 3,022,303 - Pf6N2E2_2563 0.81 -3.8 3,022,303 - Pf6N2E2_2563 0.81 -2.7 3,022,303 - Pf6N2E2_2563 0.81 -2.8 3,022,303 - Pf6N2E2_2563 0.81 +0.8 3,022,303 - Pf6N2E2_2563 0.81 -3.3 3,022,303 - Pf6N2E2_2563 0.81 -3.7 3,022,303 - Pf6N2E2_2563 0.81 -1.8 3,022,303 - Pf6N2E2_2563 0.81 -2.4 3,022,303 - Pf6N2E2_2563 0.81 -2.8 3,022,303 - Pf6N2E2_2563 0.81 -2.5 3,022,303 - Pf6N2E2_2563 0.81 -2.8 3,022,304 + Pf6N2E2_2563 0.82 -1.7 3,022,304 + Pf6N2E2_2563 0.82 -3.7 3,022,304 + Pf6N2E2_2563 0.82 -3.0 3,022,304 + Pf6N2E2_2563 0.82 -1.8 3,022,305 - Pf6N2E2_2563 0.82 -3.7 3,022,305 - Pf6N2E2_2563 0.82 -3.5 3,022,305 - Pf6N2E2_2563 0.82 -3.4 3,022,305 - Pf6N2E2_2563 0.82 -3.5 3,022,305 - Pf6N2E2_2563 0.82 -2.1 3,022,306 + Pf6N2E2_2563 0.82 -1.4 3,022,306 + Pf6N2E2_2563 0.82 -0.8 3,022,306 + Pf6N2E2_2563 0.82 +0.8 3,022,306 + Pf6N2E2_2563 0.82 -2.4 3,022,307 - Pf6N2E2_2563 0.82 -3.2 3,022,307 - Pf6N2E2_2563 0.82 -3.3 3,022,307 - Pf6N2E2_2563 0.82 -3.5 3,022,307 - Pf6N2E2_2563 0.82 -1.6 3,022,363 - -2.2 3,022,363 - -2.7 3,022,363 - +1.3 3,022,384 - -2.7 3,022,384 - -3.0 3,022,384 - -1.6 3,022,539 - Pf6N2E2_2564 0.33 -1.3 3,022,706 + Pf6N2E2_2564 0.67 -1.6 3,022,707 - Pf6N2E2_2564 0.68 -3.6 3,022,707 - Pf6N2E2_2564 0.68 -2.2 3,022,741 - Pf6N2E2_2564 0.75 -2.0 3,022,742 + Pf6N2E2_2564 0.75 -1.7 3,022,742 + Pf6N2E2_2564 0.75 -1.3 3,022,781 + Pf6N2E2_2564 0.83 -3.0 3,022,781 + Pf6N2E2_2564 0.83 -2.3 3,022,782 - Pf6N2E2_2564 0.83 -3.0 3,022,782 - Pf6N2E2_2564 0.83 -3.4 3,022,854 + -3.9 3,022,854 + -2.2 3,022,863 + -2.3 3,022,864 - -1.5 3,022,900 + -2.2 3,022,900 + -3.4 3,022,900 + -1.2 3,022,900 + -4.3 3,022,900 + -2.5 3,022,900 + -3.0 3,022,901 - +1.0 3,022,901 - -0.6 3,022,901 - -1.5 3,022,937 + -3.0 3,022,937 + -2.1 3,023,037 + Pf6N2E2_2565 0.11 -1.5 3,023,037 + Pf6N2E2_2565 0.11 -1.0 3,023,037 + Pf6N2E2_2565 0.11 -3.2 3,023,037 + Pf6N2E2_2565 0.11 -2.0 3,023,037 + Pf6N2E2_2565 0.11 -3.1 3,023,037 + Pf6N2E2_2565 0.11 -2.0 3,023,037 + Pf6N2E2_2565 0.11 -3.8 3,023,037 + Pf6N2E2_2565 0.11 -1.6 3,023,037 + Pf6N2E2_2565 0.11 -0.5 3,023,037 + Pf6N2E2_2565 0.11 -2.2 3,023,037 + Pf6N2E2_2565 0.11 -1.6 3,023,037 + Pf6N2E2_2565 0.11 -3.6 3,023,038 - Pf6N2E2_2565 0.11 -3.6 3,023,038 - Pf6N2E2_2565 0.11 -3.0 3,023,038 - Pf6N2E2_2565 0.11 -1.0 3,023,038 - Pf6N2E2_2565 0.11 -1.9 3,023,038 - Pf6N2E2_2565 0.11 -2.6 3,023,038 - Pf6N2E2_2565 0.11 -1.8 3,023,038 - Pf6N2E2_2565 0.11 -2.0 3,023,038 - Pf6N2E2_2565 0.11 -2.2 3,023,038 - Pf6N2E2_2565 0.11 -2.4 3,023,052 + Pf6N2E2_2565 0.12 -3.1 3,023,157 - Pf6N2E2_2565 0.24 -2.4 3,023,177 + Pf6N2E2_2565 0.26 -2.8 3,023,177 + Pf6N2E2_2565 0.26 -3.2 3,023,178 - Pf6N2E2_2565 0.26 -3.5 3,023,178 - Pf6N2E2_2565 0.26 -3.0 3,023,606 - Pf6N2E2_2565 0.71 +0.2 3,023,760 - Pf6N2E2_2565 0.88 -2.8 3,023,760 - Pf6N2E2_2565 0.88 -1.4 3,023,798 - -1.5 3,023,811 + -2.2 3,023,909 + -3.2 3,024,055 - Pf6N2E2_2566 0.19 -0.5 3,024,056 + Pf6N2E2_2566 0.19 -1.9 3,024,056 + Pf6N2E2_2566 0.19 -2.9 3,024,056 + Pf6N2E2_2566 0.19 -2.0 3,024,056 + Pf6N2E2_2566 0.19 +1.1 3,024,056 + Pf6N2E2_2566 0.19 -3.2 3,024,057 - Pf6N2E2_2566 0.19 +0.5 3,024,057 - Pf6N2E2_2566 0.19 +0.1 3,024,057 - Pf6N2E2_2566 0.19 -0.6 3,024,057 - Pf6N2E2_2566 0.19 +0.9 3,024,057 - Pf6N2E2_2566 0.19 -0.6 3,024,080 + Pf6N2E2_2566 0.22 -3.0 3,024,081 - Pf6N2E2_2566 0.22 -1.3 3,024,081 - Pf6N2E2_2566 0.22 -3.2 3,024,081 - Pf6N2E2_2566 0.22 -2.3 3,024,198 + Pf6N2E2_2566 0.37 -2.2 3,024,198 + Pf6N2E2_2566 0.37 -1.6 3,024,198 + Pf6N2E2_2566 0.37 -2.1 3,024,198 + Pf6N2E2_2566 0.37 -2.3 3,024,199 - Pf6N2E2_2566 0.37 -2.6 3,024,521 + Pf6N2E2_2566 0.77 -3.3 3,024,560 + Pf6N2E2_2566 0.82 -1.3 3,024,560 + Pf6N2E2_2566 0.82 -1.6 3,024,741 + -2.1 3,024,741 + -1.1 3,024,750 + -0.9 3,024,752 + -3.7 3,024,753 - +0.5 3,024,753 - -1.0
Or see this region's nucleotide sequence