Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2563

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2561 and Pf6N2E2_2562 overlap by 4 nucleotidesPf6N2E2_2562 and Pf6N2E2_2563 are separated by 252 nucleotidesPf6N2E2_2563 and Pf6N2E2_2564 are separated by 1 nucleotidesPf6N2E2_2564 and Pf6N2E2_2565 are separated by 72 nucleotides Pf6N2E2_2561 - FIG00955434: hypothetical protein, at 3,019,831 to 3,021,402 _2561 Pf6N2E2_2562 - FlhB domain protein, at 3,021,399 to 3,021,728 _2562 Pf6N2E2_2563 - FIG00953562: hypothetical protein, at 3,021,981 to 3,022,376 _2563 Pf6N2E2_2564 - Positive regulator of CheA protein activity (CheW), at 3,022,378 to 3,022,863 _2564 Pf6N2E2_2565 - CheW domain protein, at 3,022,936 to 3,023,874 _2565 Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3021.223 kb on - strand, within Pf6N2E2_2561at 3021.723 kb on + strandat 3021.724 kb on - strandat 3021.928 kb on + strandat 3021.928 kb on + strandat 3021.928 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.002 kb on - strandat 3022.002 kb on - strandat 3022.002 kb on - strandat 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.363 kb on - strandat 3022.363 kb on - strandat 3022.363 kb on - strandat 3022.384 kb on - strandat 3022.384 kb on - strandat 3022.384 kb on - strandat 3022.539 kb on - strand, within Pf6N2E2_2564at 3022.706 kb on + strand, within Pf6N2E2_2564at 3022.707 kb on - strand, within Pf6N2E2_2564at 3022.707 kb on - strand, within Pf6N2E2_2564at 3022.741 kb on - strand, within Pf6N2E2_2564at 3022.742 kb on + strand, within Pf6N2E2_2564at 3022.742 kb on + strand, within Pf6N2E2_2564at 3022.781 kb on + strand, within Pf6N2E2_2564at 3022.781 kb on + strand, within Pf6N2E2_2564at 3022.782 kb on - strand, within Pf6N2E2_2564at 3022.782 kb on - strand, within Pf6N2E2_2564at 3022.854 kb on + strandat 3022.854 kb on + strandat 3022.863 kb on + strandat 3022.864 kb on - strandat 3022.900 kb on + strandat 3022.900 kb on + strandat 3022.900 kb on + strandat 3022.900 kb on + strandat 3022.900 kb on + strandat 3022.900 kb on + strandat 3022.901 kb on - strandat 3022.901 kb on - strandat 3022.901 kb on - strandat 3022.937 kb on + strandat 3022.937 kb on + strandat 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.037 kb on + strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.038 kb on - strand, within Pf6N2E2_2565at 3023.052 kb on + strand, within Pf6N2E2_2565at 3023.157 kb on - strand, within Pf6N2E2_2565at 3023.177 kb on + strand, within Pf6N2E2_2565at 3023.177 kb on + strand, within Pf6N2E2_2565at 3023.178 kb on - strand, within Pf6N2E2_2565at 3023.178 kb on - strand, within Pf6N2E2_2565

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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3,021,223 - Pf6N2E2_2561 0.89 -1.5
3,021,723 + -0.9
3,021,724 - -1.7
3,021,928 + -0.1
3,021,928 + -1.3
3,021,928 + -1.5
3,022,001 + -3.3
3,022,001 + -3.6
3,022,001 + +0.5
3,022,001 + -3.0
3,022,001 + -3.0
3,022,002 - -3.4
3,022,002 - -2.5
3,022,002 - -4.0
3,022,302 + Pf6N2E2_2563 0.81 -2.6
3,022,302 + Pf6N2E2_2563 0.81 -2.0
3,022,302 + Pf6N2E2_2563 0.81 -1.3
3,022,302 + Pf6N2E2_2563 0.81 -3.0
3,022,302 + Pf6N2E2_2563 0.81 -2.6
3,022,302 + Pf6N2E2_2563 0.81 -1.6
3,022,302 + Pf6N2E2_2563 0.81 -2.3
3,022,302 + Pf6N2E2_2563 0.81 -1.1
3,022,303 - Pf6N2E2_2563 0.81 -3.1
3,022,303 - Pf6N2E2_2563 0.81 -3.4
3,022,303 - Pf6N2E2_2563 0.81 -3.1
3,022,303 - Pf6N2E2_2563 0.81 -3.4
3,022,303 - Pf6N2E2_2563 0.81 -1.1
3,022,303 - Pf6N2E2_2563 0.81 -3.6
3,022,303 - Pf6N2E2_2563 0.81 -2.8
3,022,303 - Pf6N2E2_2563 0.81 -3.0
3,022,303 - Pf6N2E2_2563 0.81 -3.3
3,022,303 - Pf6N2E2_2563 0.81 -2.3
3,022,303 - Pf6N2E2_2563 0.81 -3.3
3,022,303 - Pf6N2E2_2563 0.81 -2.4
3,022,303 - Pf6N2E2_2563 0.81 -3.3
3,022,303 - Pf6N2E2_2563 0.81 -3.9
3,022,303 - Pf6N2E2_2563 0.81 -1.9
3,022,303 - Pf6N2E2_2563 0.81 -2.8
3,022,303 - Pf6N2E2_2563 0.81 -0.3
3,022,303 - Pf6N2E2_2563 0.81 -3.6
3,022,303 - Pf6N2E2_2563 0.81 -3.8
3,022,303 - Pf6N2E2_2563 0.81 -2.7
3,022,303 - Pf6N2E2_2563 0.81 -2.8
3,022,303 - Pf6N2E2_2563 0.81 +0.8
3,022,303 - Pf6N2E2_2563 0.81 -3.3
3,022,303 - Pf6N2E2_2563 0.81 -3.7
3,022,303 - Pf6N2E2_2563 0.81 -1.8
3,022,303 - Pf6N2E2_2563 0.81 -2.4
3,022,303 - Pf6N2E2_2563 0.81 -2.8
3,022,303 - Pf6N2E2_2563 0.81 -2.5
3,022,303 - Pf6N2E2_2563 0.81 -2.8
3,022,304 + Pf6N2E2_2563 0.82 -1.7
3,022,304 + Pf6N2E2_2563 0.82 -3.7
3,022,304 + Pf6N2E2_2563 0.82 -3.0
3,022,304 + Pf6N2E2_2563 0.82 -1.8
3,022,305 - Pf6N2E2_2563 0.82 -3.7
3,022,305 - Pf6N2E2_2563 0.82 -3.5
3,022,305 - Pf6N2E2_2563 0.82 -3.4
3,022,305 - Pf6N2E2_2563 0.82 -3.5
3,022,305 - Pf6N2E2_2563 0.82 -2.1
3,022,306 + Pf6N2E2_2563 0.82 -1.4
3,022,306 + Pf6N2E2_2563 0.82 -0.8
3,022,306 + Pf6N2E2_2563 0.82 +0.8
3,022,306 + Pf6N2E2_2563 0.82 -2.4
3,022,307 - Pf6N2E2_2563 0.82 -3.2
3,022,307 - Pf6N2E2_2563 0.82 -3.3
3,022,307 - Pf6N2E2_2563 0.82 -3.5
3,022,307 - Pf6N2E2_2563 0.82 -1.6
3,022,363 - -2.2
3,022,363 - -2.7
3,022,363 - +1.3
3,022,384 - -2.7
3,022,384 - -3.0
3,022,384 - -1.6
3,022,539 - Pf6N2E2_2564 0.33 -1.3
3,022,706 + Pf6N2E2_2564 0.67 -1.6
3,022,707 - Pf6N2E2_2564 0.68 -3.6
3,022,707 - Pf6N2E2_2564 0.68 -2.2
3,022,741 - Pf6N2E2_2564 0.75 -2.0
3,022,742 + Pf6N2E2_2564 0.75 -1.7
3,022,742 + Pf6N2E2_2564 0.75 -1.3
3,022,781 + Pf6N2E2_2564 0.83 -3.0
3,022,781 + Pf6N2E2_2564 0.83 -2.3
3,022,782 - Pf6N2E2_2564 0.83 -3.0
3,022,782 - Pf6N2E2_2564 0.83 -3.4
3,022,854 + -3.9
3,022,854 + -2.2
3,022,863 + -2.3
3,022,864 - -1.5
3,022,900 + -2.2
3,022,900 + -3.4
3,022,900 + -1.2
3,022,900 + -4.3
3,022,900 + -2.5
3,022,900 + -3.0
3,022,901 - +1.0
3,022,901 - -0.6
3,022,901 - -1.5
3,022,937 + -3.0
3,022,937 + -2.1
3,023,037 + Pf6N2E2_2565 0.11 -1.5
3,023,037 + Pf6N2E2_2565 0.11 -1.0
3,023,037 + Pf6N2E2_2565 0.11 -3.2
3,023,037 + Pf6N2E2_2565 0.11 -2.0
3,023,037 + Pf6N2E2_2565 0.11 -3.1
3,023,037 + Pf6N2E2_2565 0.11 -2.0
3,023,037 + Pf6N2E2_2565 0.11 -3.8
3,023,037 + Pf6N2E2_2565 0.11 -1.6
3,023,037 + Pf6N2E2_2565 0.11 -0.5
3,023,037 + Pf6N2E2_2565 0.11 -2.2
3,023,037 + Pf6N2E2_2565 0.11 -1.6
3,023,037 + Pf6N2E2_2565 0.11 -3.6
3,023,038 - Pf6N2E2_2565 0.11 -3.6
3,023,038 - Pf6N2E2_2565 0.11 -3.0
3,023,038 - Pf6N2E2_2565 0.11 -1.0
3,023,038 - Pf6N2E2_2565 0.11 -1.9
3,023,038 - Pf6N2E2_2565 0.11 -2.6
3,023,038 - Pf6N2E2_2565 0.11 -1.8
3,023,038 - Pf6N2E2_2565 0.11 -2.0
3,023,038 - Pf6N2E2_2565 0.11 -2.2
3,023,038 - Pf6N2E2_2565 0.11 -2.4
3,023,052 + Pf6N2E2_2565 0.12 -3.1
3,023,157 - Pf6N2E2_2565 0.24 -2.4
3,023,177 + Pf6N2E2_2565 0.26 -2.8
3,023,177 + Pf6N2E2_2565 0.26 -3.2
3,023,178 - Pf6N2E2_2565 0.26 -3.5
3,023,178 - Pf6N2E2_2565 0.26 -3.0

Or see this region's nucleotide sequence