Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2310

Experiment: inner cut, LB soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2308 and Pf6N2E2_2309 are separated by 395 nucleotidesPf6N2E2_2309 and Pf6N2E2_2310 overlap by 117 nucleotidesPf6N2E2_2310 and Pf6N2E2_2311 overlap by 1 nucleotidesPf6N2E2_2311 and Pf6N2E2_2312 are separated by 18 nucleotidesPf6N2E2_2312 and Pf6N2E2_2313 overlap by 4 nucleotides Pf6N2E2_2308 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 2,732,776 to 2,733,732 _2308 Pf6N2E2_2309 - hypothetical protein, at 2,734,128 to 2,734,358 _2309 Pf6N2E2_2310 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 2,734,242 to 2,735,684 _2310 Pf6N2E2_2311 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 2,735,684 to 2,736,292 _2311 Pf6N2E2_2312 - Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1), at 2,736,311 to 2,736,484 _2312 Pf6N2E2_2313 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 2,736,481 to 2,737,464 _2313 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2733.350 kb on + strand, within Pf6N2E2_2308at 2733.385 kb on + strand, within Pf6N2E2_2308at 2733.386 kb on - strand, within Pf6N2E2_2308at 2733.386 kb on - strand, within Pf6N2E2_2308at 2733.390 kb on - strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.554 kb on - strand, within Pf6N2E2_2308at 2733.609 kb on + strand, within Pf6N2E2_2308at 2733.610 kb on - strand, within Pf6N2E2_2308at 2733.610 kb on - strand, within Pf6N2E2_2308at 2733.633 kb on - strand, within Pf6N2E2_2308at 2733.664 kb on + strandat 2733.665 kb on - strandat 2733.670 kb on + strandat 2733.671 kb on - strandat 2733.730 kb on + strandat 2733.731 kb on - strandat 2733.873 kb on + strandat 2733.873 kb on + strandat 2733.873 kb on + strandat 2733.874 kb on - strandat 2733.874 kb on - strandat 2734.034 kb on - strandat 2734.212 kb on - strand, within Pf6N2E2_2309at 2734.214 kb on + strand, within Pf6N2E2_2309at 2734.239 kb on - strand, within Pf6N2E2_2309at 2734.239 kb on - strand, within Pf6N2E2_2309at 2734.270 kb on - strandat 2734.271 kb on + strandat 2734.271 kb on + strandat 2734.271 kb on + strandat 2734.271 kb on + strandat 2734.271 kb on + strandat 2734.272 kb on - strandat 2734.272 kb on - strandat 2734.275 kb on + strandat 2734.275 kb on + strandat 2734.275 kb on + strandat 2734.275 kb on + strandat 2734.275 kb on + strandat 2734.276 kb on - strandat 2734.276 kb on - strandat 2734.276 kb on - strandat 2734.276 kb on - strandat 2734.276 kb on - strandat 2734.278 kb on - strandat 2734.278 kb on - strandat 2734.283 kb on - strandat 2734.283 kb on - strandat 2734.283 kb on - strandat 2734.476 kb on + strand, within Pf6N2E2_2310at 2734.476 kb on + strand, within Pf6N2E2_2310at 2734.477 kb on - strand, within Pf6N2E2_2310at 2734.477 kb on - strand, within Pf6N2E2_2310at 2734.480 kb on - strand, within Pf6N2E2_2310at 2734.480 kb on - strand, within Pf6N2E2_2310at 2734.480 kb on - strand, within Pf6N2E2_2310at 2734.480 kb on - strand, within Pf6N2E2_2310at 2734.480 kb on - strand, within Pf6N2E2_2310at 2734.594 kb on - strand, within Pf6N2E2_2310at 2734.612 kb on - strand, within Pf6N2E2_2310at 2734.665 kb on + strand, within Pf6N2E2_2310at 2734.666 kb on - strand, within Pf6N2E2_2310at 2734.666 kb on - strandat 2734.716 kb on + strand, within Pf6N2E2_2310at 2734.716 kb on + strand, within Pf6N2E2_2310at 2734.716 kb on + strand, within Pf6N2E2_2310at 2734.717 kb on - strand, within Pf6N2E2_2310at 2734.717 kb on - strand, within Pf6N2E2_2310at 2734.724 kb on + strand, within Pf6N2E2_2310at 2734.735 kb on - strand, within Pf6N2E2_2310at 2734.735 kb on - strand, within Pf6N2E2_2310at 2734.735 kb on - strand, within Pf6N2E2_2310at 2734.736 kb on - strand, within Pf6N2E2_2310at 2734.821 kb on + strand, within Pf6N2E2_2310at 2734.911 kb on + strand, within Pf6N2E2_2310at 2734.912 kb on - strand, within Pf6N2E2_2310at 2734.912 kb on - strand, within Pf6N2E2_2310at 2734.912 kb on - strand, within Pf6N2E2_2310at 2734.912 kb on - strand, within Pf6N2E2_2310at 2734.914 kb on + strand, within Pf6N2E2_2310at 2734.914 kb on + strand, within Pf6N2E2_2310at 2734.914 kb on + strand, within Pf6N2E2_2310at 2734.947 kb on + strand, within Pf6N2E2_2310at 2734.947 kb on + strand, within Pf6N2E2_2310at 2734.947 kb on + strand, within Pf6N2E2_2310at 2734.947 kb on + strand, within Pf6N2E2_2310at 2734.948 kb on - strand, within Pf6N2E2_2310at 2734.954 kb on - strand, within Pf6N2E2_2310at 2734.995 kb on + strand, within Pf6N2E2_2310at 2734.995 kb on + strand, within Pf6N2E2_2310at 2734.996 kb on - strand, within Pf6N2E2_2310at 2735.141 kb on + strand, within Pf6N2E2_2310at 2735.142 kb on - strand, within Pf6N2E2_2310at 2735.332 kb on - strand, within Pf6N2E2_2310at 2735.332 kb on - strand, within Pf6N2E2_2310at 2735.428 kb on - strand, within Pf6N2E2_2310at 2735.428 kb on - strand, within Pf6N2E2_2310at 2735.505 kb on + strand, within Pf6N2E2_2310at 2735.505 kb on + strand, within Pf6N2E2_2310at 2735.506 kb on - strand, within Pf6N2E2_2310at 2735.601 kb on + strandat 2735.601 kb on + strandat 2735.602 kb on - strandat 2735.602 kb on - strandat 2735.611 kb on - strandat 2735.669 kb on - strandat 2735.701 kb on - strandat 2735.797 kb on + strand, within Pf6N2E2_2311at 2735.798 kb on - strand, within Pf6N2E2_2311at 2735.858 kb on + strandat 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.858 kb on + strand, within Pf6N2E2_2311at 2735.859 kb on - strand, within Pf6N2E2_2311at 2735.859 kb on - strand, within Pf6N2E2_2311at 2735.859 kb on - strand, within Pf6N2E2_2311at 2735.859 kb on - strandat 2735.859 kb on - strand, within Pf6N2E2_2311at 2735.859 kb on - strand, within Pf6N2E2_2311at 2735.927 kb on + strand, within Pf6N2E2_2311at 2735.927 kb on + strand, within Pf6N2E2_2311at 2735.937 kb on - strand, within Pf6N2E2_2311at 2735.992 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.056 kb on + strand, within Pf6N2E2_2311at 2736.057 kb on - strand, within Pf6N2E2_2311at 2736.179 kb on + strand, within Pf6N2E2_2311at 2736.466 kb on + strand, within Pf6N2E2_2312at 2736.466 kb on + strand, within Pf6N2E2_2312at 2736.466 kb on + strand, within Pf6N2E2_2312at 2736.628 kb on + strand, within Pf6N2E2_2313

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
remove
2,733,350 + Pf6N2E2_2308 0.60 -1.4
2,733,385 + Pf6N2E2_2308 0.64 -2.6
2,733,386 - Pf6N2E2_2308 0.64 -1.7
2,733,386 - Pf6N2E2_2308 0.64 -2.6
2,733,390 - Pf6N2E2_2308 0.64 -0.5
2,733,553 + Pf6N2E2_2308 0.81 +0.5
2,733,553 + Pf6N2E2_2308 0.81 -0.9
2,733,553 + Pf6N2E2_2308 0.81 -0.6
2,733,554 - Pf6N2E2_2308 0.81 -1.7
2,733,609 + Pf6N2E2_2308 0.87 -0.4
2,733,610 - Pf6N2E2_2308 0.87 -1.7
2,733,610 - Pf6N2E2_2308 0.87 -1.3
2,733,633 - Pf6N2E2_2308 0.90 -0.2
2,733,664 + -2.2
2,733,665 - -1.3
2,733,670 + -2.3
2,733,671 - -0.5
2,733,730 + +0.6
2,733,731 - -0.6
2,733,873 + -1.5
2,733,873 + -0.8
2,733,873 + +0.3
2,733,874 - +1.1
2,733,874 - -2.1
2,734,034 - -0.7
2,734,212 - Pf6N2E2_2309 0.36 -3.2
2,734,214 + Pf6N2E2_2309 0.37 -0.6
2,734,239 - Pf6N2E2_2309 0.48 -2.2
2,734,239 - Pf6N2E2_2309 0.48 -1.0
2,734,270 - -2.3
2,734,271 + -1.6
2,734,271 + -1.7
2,734,271 + -1.9
2,734,271 + -1.7
2,734,271 + -2.9
2,734,272 - -1.6
2,734,272 - -2.1
2,734,275 + -2.3
2,734,275 + -1.9
2,734,275 + +2.4
2,734,275 + -1.0
2,734,275 + +0.6
2,734,276 - -1.9
2,734,276 - -1.8
2,734,276 - -3.7
2,734,276 - -2.2
2,734,276 - -1.5
2,734,278 - -1.6
2,734,278 - +0.3
2,734,283 - -1.4
2,734,283 - -2.6
2,734,283 - -1.0
2,734,476 + Pf6N2E2_2310 0.16 -1.1
2,734,476 + Pf6N2E2_2310 0.16 -0.7
2,734,477 - Pf6N2E2_2310 0.16 -1.4
2,734,477 - Pf6N2E2_2310 0.16 -2.4
2,734,480 - Pf6N2E2_2310 0.16 -1.5
2,734,480 - Pf6N2E2_2310 0.16 -1.0
2,734,480 - Pf6N2E2_2310 0.16 -1.4
2,734,480 - Pf6N2E2_2310 0.16 -2.3
2,734,480 - Pf6N2E2_2310 0.16 -2.2
2,734,594 - Pf6N2E2_2310 0.24 -1.2
2,734,612 - Pf6N2E2_2310 0.26 -3.0
2,734,665 + Pf6N2E2_2310 0.29 -2.3
2,734,666 - Pf6N2E2_2310 0.29 -1.8
2,734,666 - +1.4
2,734,716 + Pf6N2E2_2310 0.33 -0.4
2,734,716 + Pf6N2E2_2310 0.33 -2.2
2,734,716 + Pf6N2E2_2310 0.33 -2.0
2,734,717 - Pf6N2E2_2310 0.33 -1.8
2,734,717 - Pf6N2E2_2310 0.33 -2.0
2,734,724 + Pf6N2E2_2310 0.33 -2.0
2,734,735 - Pf6N2E2_2310 0.34 -2.2
2,734,735 - Pf6N2E2_2310 0.34 -1.4
2,734,735 - Pf6N2E2_2310 0.34 +0.4
2,734,736 - Pf6N2E2_2310 0.34 -0.8
2,734,821 + Pf6N2E2_2310 0.40 -1.6
2,734,911 + Pf6N2E2_2310 0.46 -1.6
2,734,912 - Pf6N2E2_2310 0.46 -2.6
2,734,912 - Pf6N2E2_2310 0.46 -2.9
2,734,912 - Pf6N2E2_2310 0.46 -0.7
2,734,912 - Pf6N2E2_2310 0.46 -1.5
2,734,914 + Pf6N2E2_2310 0.47 -0.6
2,734,914 + Pf6N2E2_2310 0.47 -1.5
2,734,914 + Pf6N2E2_2310 0.47 -2.5
2,734,947 + Pf6N2E2_2310 0.49 -1.0
2,734,947 + Pf6N2E2_2310 0.49 -1.5
2,734,947 + Pf6N2E2_2310 0.49 -2.5
2,734,947 + Pf6N2E2_2310 0.49 -1.1
2,734,948 - Pf6N2E2_2310 0.49 -0.3
2,734,954 - Pf6N2E2_2310 0.49 -1.9
2,734,995 + Pf6N2E2_2310 0.52 -1.4
2,734,995 + Pf6N2E2_2310 0.52 -1.6
2,734,996 - Pf6N2E2_2310 0.52 -1.0
2,735,141 + Pf6N2E2_2310 0.62 -2.8
2,735,142 - Pf6N2E2_2310 0.62 -0.2
2,735,332 - Pf6N2E2_2310 0.76 -1.6
2,735,332 - Pf6N2E2_2310 0.76 -0.7
2,735,428 - Pf6N2E2_2310 0.82 -0.9
2,735,428 - Pf6N2E2_2310 0.82 -2.0
2,735,505 + Pf6N2E2_2310 0.88 -3.1
2,735,505 + Pf6N2E2_2310 0.88 -0.3
2,735,506 - Pf6N2E2_2310 0.88 -1.8
2,735,601 + -2.5
2,735,601 + -1.6
2,735,602 - -0.8
2,735,602 - -0.8
2,735,611 - -1.3
2,735,669 - -1.3
2,735,701 - -0.5
2,735,797 + Pf6N2E2_2311 0.19 -2.2
2,735,798 - Pf6N2E2_2311 0.19 -1.3
2,735,858 + +1.9
2,735,858 + Pf6N2E2_2311 0.29 -0.6
2,735,858 + Pf6N2E2_2311 0.29 -1.7
2,735,858 + Pf6N2E2_2311 0.29 -2.5
2,735,858 + Pf6N2E2_2311 0.29 -2.2
2,735,858 + Pf6N2E2_2311 0.29 -2.6
2,735,858 + Pf6N2E2_2311 0.29 -1.5
2,735,858 + Pf6N2E2_2311 0.29 -0.9
2,735,858 + Pf6N2E2_2311 0.29 -2.2
2,735,858 + Pf6N2E2_2311 0.29 -1.0
2,735,858 + Pf6N2E2_2311 0.29 -2.8
2,735,858 + Pf6N2E2_2311 0.29 +0.6
2,735,858 + Pf6N2E2_2311 0.29 -1.3
2,735,859 - Pf6N2E2_2311 0.29 -1.3
2,735,859 - Pf6N2E2_2311 0.29 -0.0
2,735,859 - Pf6N2E2_2311 0.29 -2.7
2,735,859 - +2.4
2,735,859 - Pf6N2E2_2311 0.29 -1.1
2,735,859 - Pf6N2E2_2311 0.29 -2.1
2,735,927 + Pf6N2E2_2311 0.40 -1.6
2,735,927 + Pf6N2E2_2311 0.40 -0.7
2,735,937 - Pf6N2E2_2311 0.42 -1.7
2,735,992 + Pf6N2E2_2311 0.51 -1.5
2,736,056 + Pf6N2E2_2311 0.61 -1.7
2,736,056 + Pf6N2E2_2311 0.61 -1.5
2,736,056 + Pf6N2E2_2311 0.61 -1.7
2,736,056 + Pf6N2E2_2311 0.61 +0.2
2,736,056 + Pf6N2E2_2311 0.61 +0.6
2,736,056 + Pf6N2E2_2311 0.61 -2.4
2,736,057 - Pf6N2E2_2311 0.61 -2.9
2,736,179 + Pf6N2E2_2311 0.81 -1.0
2,736,466 + Pf6N2E2_2312 0.89 -3.0
2,736,466 + Pf6N2E2_2312 0.89 -0.3
2,736,466 + Pf6N2E2_2312 0.89 -0.1
2,736,628 + Pf6N2E2_2313 0.15 -1.9

Or see this region's nucleotide sequence