Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1058

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1057 and Pf6N2E2_1058 are separated by 96 nucleotidesPf6N2E2_1058 and Pf6N2E2_1059 are separated by 90 nucleotides Pf6N2E2_1057 - hypothetical protein, at 1,232,417 to 1,233,883 _1057 Pf6N2E2_1058 - FIG000557: hypothetical protein co-occurring with RecR, at 1,233,980 to 1,235,377 _1058 Pf6N2E2_1059 - Phosphoglucomutase (EC 5.4.2.2), at 1,235,468 to 1,237,114 _1059 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1232.980 kb on + strand, within Pf6N2E2_1057at 1232.981 kb on - strand, within Pf6N2E2_1057at 1232.981 kb on - strand, within Pf6N2E2_1057at 1233.107 kb on - strand, within Pf6N2E2_1057at 1233.107 kb on - strand, within Pf6N2E2_1057at 1233.107 kb on - strand, within Pf6N2E2_1057at 1233.107 kb on - strand, within Pf6N2E2_1057at 1233.107 kb on - strand, within Pf6N2E2_1057at 1233.110 kb on + strand, within Pf6N2E2_1057at 1233.110 kb on + strand, within Pf6N2E2_1057at 1233.111 kb on - strand, within Pf6N2E2_1057at 1233.122 kb on + strand, within Pf6N2E2_1057at 1233.123 kb on - strand, within Pf6N2E2_1057at 1233.305 kb on + strand, within Pf6N2E2_1057at 1233.371 kb on + strand, within Pf6N2E2_1057at 1233.372 kb on - strand, within Pf6N2E2_1057at 1233.393 kb on - strand, within Pf6N2E2_1057at 1233.503 kb on + strand, within Pf6N2E2_1057at 1233.908 kb on + strandat 1233.908 kb on + strandat 1233.908 kb on + strandat 1233.908 kb on + strandat 1233.909 kb on - strandat 1233.929 kb on - strandat 1234.114 kb on - strandat 1234.139 kb on + strand, within Pf6N2E2_1058at 1234.139 kb on + strand, within Pf6N2E2_1058at 1234.140 kb on - strand, within Pf6N2E2_1058at 1234.169 kb on + strand, within Pf6N2E2_1058at 1234.170 kb on - strand, within Pf6N2E2_1058at 1234.193 kb on + strand, within Pf6N2E2_1058at 1234.194 kb on - strand, within Pf6N2E2_1058at 1234.256 kb on + strand, within Pf6N2E2_1058at 1234.256 kb on + strand, within Pf6N2E2_1058at 1234.257 kb on - strand, within Pf6N2E2_1058at 1234.257 kb on - strand, within Pf6N2E2_1058at 1234.257 kb on - strand, within Pf6N2E2_1058at 1234.257 kb on - strand, within Pf6N2E2_1058at 1234.257 kb on - strand, within Pf6N2E2_1058at 1234.481 kb on + strand, within Pf6N2E2_1058at 1234.481 kb on + strand, within Pf6N2E2_1058at 1234.481 kb on + strand, within Pf6N2E2_1058at 1234.481 kb on + strand, within Pf6N2E2_1058at 1234.481 kb on + strand, within Pf6N2E2_1058at 1234.482 kb on - strand, within Pf6N2E2_1058at 1234.482 kb on - strand, within Pf6N2E2_1058at 1234.482 kb on - strandat 1234.816 kb on + strand, within Pf6N2E2_1058at 1234.886 kb on + strand, within Pf6N2E2_1058at 1234.925 kb on + strand, within Pf6N2E2_1058at 1234.926 kb on - strand, within Pf6N2E2_1058at 1234.932 kb on - strand, within Pf6N2E2_1058at 1235.030 kb on + strand, within Pf6N2E2_1058at 1235.276 kb on + strandat 1235.277 kb on - strandat 1235.277 kb on - strandat 1235.287 kb on + strandat 1235.287 kb on + strandat 1235.287 kb on + strandat 1235.287 kb on + strandat 1235.287 kb on + strandat 1235.287 kb on + strandat 1235.288 kb on - strandat 1235.376 kb on - strandat 1235.439 kb on + strandat 1235.546 kb on + strandat 1235.547 kb on - strandat 1235.547 kb on - strandat 1235.547 kb on - strandat 1235.547 kb on - strandat 1235.769 kb on + strand, within Pf6N2E2_1059at 1235.769 kb on + strand, within Pf6N2E2_1059at 1235.770 kb on - strand, within Pf6N2E2_1059at 1235.770 kb on - strand, within Pf6N2E2_1059at 1235.794 kb on - strand, within Pf6N2E2_1059at 1235.816 kb on + strand, within Pf6N2E2_1059at 1235.816 kb on + strand, within Pf6N2E2_1059at 1235.855 kb on + strand, within Pf6N2E2_1059at 1235.939 kb on + strand, within Pf6N2E2_1059at 1235.939 kb on + strand, within Pf6N2E2_1059at 1235.940 kb on - strand, within Pf6N2E2_1059at 1235.940 kb on - strand, within Pf6N2E2_1059at 1235.948 kb on - strand, within Pf6N2E2_1059at 1235.975 kb on - strand, within Pf6N2E2_1059at 1236.089 kb on + strand, within Pf6N2E2_1059at 1236.089 kb on + strand, within Pf6N2E2_1059at 1236.089 kb on + strand, within Pf6N2E2_1059at 1236.090 kb on - strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.093 kb on + strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.094 kb on - strand, within Pf6N2E2_1059at 1236.101 kb on + strand, within Pf6N2E2_1059at 1236.102 kb on - strand, within Pf6N2E2_1059at 1236.102 kb on - strand, within Pf6N2E2_1059at 1236.222 kb on - strand, within Pf6N2E2_1059

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,232,980 + Pf6N2E2_1057 0.38 +2.5
1,232,981 - Pf6N2E2_1057 0.38 -0.4
1,232,981 - Pf6N2E2_1057 0.38 -1.0
1,233,107 - Pf6N2E2_1057 0.47 -0.7
1,233,107 - Pf6N2E2_1057 0.47 +0.2
1,233,107 - Pf6N2E2_1057 0.47 -0.3
1,233,107 - Pf6N2E2_1057 0.47 -0.3
1,233,107 - Pf6N2E2_1057 0.47 -1.3
1,233,110 + Pf6N2E2_1057 0.47 -0.5
1,233,110 + Pf6N2E2_1057 0.47 +1.0
1,233,111 - Pf6N2E2_1057 0.47 +0.4
1,233,122 + Pf6N2E2_1057 0.48 +0.4
1,233,123 - Pf6N2E2_1057 0.48 -0.1
1,233,305 + Pf6N2E2_1057 0.61 +3.2
1,233,371 + Pf6N2E2_1057 0.65 -0.3
1,233,372 - Pf6N2E2_1057 0.65 +0.3
1,233,393 - Pf6N2E2_1057 0.67 +2.7
1,233,503 + Pf6N2E2_1057 0.74 -0.4
1,233,908 + +1.1
1,233,908 + -1.0
1,233,908 + -0.9
1,233,908 + -1.5
1,233,909 - -1.1
1,233,929 - -0.4
1,234,114 - -0.9
1,234,139 + Pf6N2E2_1058 0.11 +0.6
1,234,139 + Pf6N2E2_1058 0.11 -0.5
1,234,140 - Pf6N2E2_1058 0.11 -0.9
1,234,169 + Pf6N2E2_1058 0.14 -0.9
1,234,170 - Pf6N2E2_1058 0.14 +0.4
1,234,193 + Pf6N2E2_1058 0.15 -0.8
1,234,194 - Pf6N2E2_1058 0.15 -1.2
1,234,256 + Pf6N2E2_1058 0.20 -0.6
1,234,256 + Pf6N2E2_1058 0.20 +1.4
1,234,257 - Pf6N2E2_1058 0.20 -1.7
1,234,257 - Pf6N2E2_1058 0.20 -1.7
1,234,257 - Pf6N2E2_1058 0.20 -1.1
1,234,257 - Pf6N2E2_1058 0.20 +0.4
1,234,257 - Pf6N2E2_1058 0.20 -0.9
1,234,481 + Pf6N2E2_1058 0.36 +0.2
1,234,481 + Pf6N2E2_1058 0.36 +1.3
1,234,481 + Pf6N2E2_1058 0.36 +0.2
1,234,481 + Pf6N2E2_1058 0.36 +0.1
1,234,481 + Pf6N2E2_1058 0.36 +0.6
1,234,482 - Pf6N2E2_1058 0.36 -0.2
1,234,482 - Pf6N2E2_1058 0.36 +0.6
1,234,482 - +0.5
1,234,816 + Pf6N2E2_1058 0.60 -0.9
1,234,886 + Pf6N2E2_1058 0.65 -0.8
1,234,925 + Pf6N2E2_1058 0.68 +0.1
1,234,926 - Pf6N2E2_1058 0.68 -0.0
1,234,932 - Pf6N2E2_1058 0.68 +0.2
1,235,030 + Pf6N2E2_1058 0.75 -1.0
1,235,276 + -2.5
1,235,277 - -0.9
1,235,277 - +0.0
1,235,287 + +1.7
1,235,287 + +0.9
1,235,287 + +0.5
1,235,287 + +1.4
1,235,287 + +0.3
1,235,287 + +0.1
1,235,288 - -1.6
1,235,376 - -0.6
1,235,439 + +0.2
1,235,546 + +0.3
1,235,547 - -0.2
1,235,547 - -1.1
1,235,547 - +1.2
1,235,547 - +1.5
1,235,769 + Pf6N2E2_1059 0.18 -0.9
1,235,769 + Pf6N2E2_1059 0.18 -0.7
1,235,770 - Pf6N2E2_1059 0.18 +1.3
1,235,770 - Pf6N2E2_1059 0.18 +0.5
1,235,794 - Pf6N2E2_1059 0.20 -1.7
1,235,816 + Pf6N2E2_1059 0.21 -1.3
1,235,816 + Pf6N2E2_1059 0.21 +1.5
1,235,855 + Pf6N2E2_1059 0.23 +2.7
1,235,939 + Pf6N2E2_1059 0.29 -1.1
1,235,939 + Pf6N2E2_1059 0.29 +0.7
1,235,940 - Pf6N2E2_1059 0.29 -0.9
1,235,940 - Pf6N2E2_1059 0.29 -1.7
1,235,948 - Pf6N2E2_1059 0.29 -0.5
1,235,975 - Pf6N2E2_1059 0.31 +0.3
1,236,089 + Pf6N2E2_1059 0.38 -0.5
1,236,089 + Pf6N2E2_1059 0.38 +0.7
1,236,089 + Pf6N2E2_1059 0.38 +1.7
1,236,090 - Pf6N2E2_1059 0.38 +0.6
1,236,093 + Pf6N2E2_1059 0.38 +0.5
1,236,093 + Pf6N2E2_1059 0.38 +0.3
1,236,093 + Pf6N2E2_1059 0.38 +1.3
1,236,093 + Pf6N2E2_1059 0.38 +0.0
1,236,093 + Pf6N2E2_1059 0.38 -0.1
1,236,093 + Pf6N2E2_1059 0.38 +0.5
1,236,093 + Pf6N2E2_1059 0.38 +0.6
1,236,093 + Pf6N2E2_1059 0.38 +0.0
1,236,094 - Pf6N2E2_1059 0.38 +0.1
1,236,094 - Pf6N2E2_1059 0.38 -3.4
1,236,094 - Pf6N2E2_1059 0.38 +0.3
1,236,094 - Pf6N2E2_1059 0.38 +0.3
1,236,094 - Pf6N2E2_1059 0.38 +0.5
1,236,094 - Pf6N2E2_1059 0.38 +1.0
1,236,094 - Pf6N2E2_1059 0.38 +0.0
1,236,101 + Pf6N2E2_1059 0.38 -1.2
1,236,102 - Pf6N2E2_1059 0.38 +0.4
1,236,102 - Pf6N2E2_1059 0.38 +1.0
1,236,222 - Pf6N2E2_1059 0.46 -0.2

Or see this region's nucleotide sequence