Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29280

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
6,504,048	+				+0.8
6,504,051	-				+0.4
6,504,069	+				-2.9
6,504,069	+				+0.1
6,504,069	+				-2.4
6,504,069	+				+0.5
6,504,069	+				-1.0
6,504,069	+				+0.7
6,504,070	-				-0.5
6,504,070	-				-0.1
6,504,070	-				-0.9
6,504,095	+				-2.3
6,504,095	+				-2.1
6,504,096	-				-1.9
6,504,106	+				-2.4
6,504,107	-				+0.6
6,504,107	-				+0.7
6,504,107	-				-0.7
6,504,159	+		PFLU_RS29275	0.10	-1.2
6,504,159	+		PFLU_RS29275	0.10	+0.1
6,504,159	+		PFLU_RS29275	0.10	-1.3
6,504,160	-		PFLU_RS29275	0.10	+0.2
6,504,160	-		PFLU_RS29275	0.10	-1.9
6,504,160	-		PFLU_RS29275	0.10	-0.9
6,504,705	+		PFLU_RS29275	0.86	+0.3
6,504,706	-		PFLU_RS29275	0.86	-1.7
6,504,706	-		PFLU_RS29275	0.86	-0.9
6,504,706	-		PFLU_RS29275	0.86	-0.4
6,504,706	-		PFLU_RS29275	0.86	+0.8
6,504,706	-		PFLU_RS29275	0.86	-0.7
6,504,706	-		PFLU_RS29275	0.86	+0.8
6,504,707	+		PFLU_RS29275	0.86	-2.8
6,504,707	+		PFLU_RS29275	0.86	-1.2
6,504,707	+		PFLU_RS29275	0.86	+0.3
6,504,707	+		PFLU_RS29275	0.86	+0.1
6,504,707	+		PFLU_RS29275	0.86	-0.5
6,504,707	+		PFLU_RS29275	0.86	-0.7
6,504,708	-		PFLU_RS29275	0.87	+0.1
6,504,708	-		PFLU_RS29275	0.87	-0.5
6,504,708	-		PFLU_RS29275	0.87	-2.5
6,504,708	-		PFLU_RS29275	0.87	-1.6
6,504,708	-		PFLU_RS29275	0.87	-0.0
6,504,708	-		PFLU_RS29275	0.87	-2.4
6,504,708	-		PFLU_RS29275	0.87	-0.2
6,504,708	-		PFLU_RS29275	0.87	-0.9
6,504,708	-		PFLU_RS29275	0.87	-2.6
6,504,708	-		PFLU_RS29275	0.87	-1.0
6,504,708	-		PFLU_RS29275	0.87	+0.1
6,504,708	-		PFLU_RS29275	0.87	-2.2
6,504,708	-		PFLU_RS29275	0.87	-0.7
6,504,708	-		PFLU_RS29275	0.87	-1.2
6,504,738	+				+0.4
6,504,738	+				+0.3
6,504,738	+				+1.1
6,504,738	+				+0.0
6,504,738	+				-1.7
6,504,738	+				+2.1
6,504,738	+				-1.3
6,504,738	+				-0.5
6,504,738	+				-0.5
6,504,738	+				-2.2
6,504,739	-				+0.2
6,504,739	-				-1.0
6,504,739	-				+2.5
6,504,739	-				+0.9
6,504,739	-				+1.3
6,504,739	-				+0.0
6,504,739	-				-2.8
6,504,739	-				+0.6
6,504,739	-				-0.2
6,504,827	+				+0.5
6,504,827	+				+0.9
6,504,828	-				-1.8
6,504,828	-				-0.0
6,504,911	+		PFLU_RS29280	0.12	-1.1
6,504,911	+		PFLU_RS29280	0.12	-1.9
6,504,911	+		PFLU_RS29280	0.12	+0.9
6,504,911	+		PFLU_RS29280	0.12	-1.5
6,505,046	+		PFLU_RS29280	0.27	-2.2
6,505,046	+		PFLU_RS29280	0.27	-1.0
6,505,046	+		PFLU_RS29280	0.27	-1.9
6,505,047	-		PFLU_RS29280	0.27	-0.2
6,505,047	-		PFLU_RS29280	0.27	-0.2
6,505,052	+		PFLU_RS29280	0.27	+1.1
6,505,052	+		PFLU_RS29280	0.27	-1.9
6,505,052	+		PFLU_RS29280	0.27	-1.8
6,505,052	+		PFLU_RS29280	0.27	-1.0
6,505,052	+		PFLU_RS29280	0.27	+1.3
6,505,052	+		PFLU_RS29280	0.27	-2.3
6,505,053	-		PFLU_RS29280	0.27	-1.3
6,505,053	-		PFLU_RS29280	0.27	+1.1
6,505,053	-		PFLU_RS29280	0.27	-1.7
6,505,058	-		PFLU_RS29280	0.28	+1.1
6,505,226	+		PFLU_RS29280	0.47	+0.8
6,505,226	+		PFLU_RS29280	0.47	-1.3
6,505,226	+		PFLU_RS29280	0.47	-0.3
6,505,226	+		PFLU_RS29280	0.47	-2.2
6,505,226	+		PFLU_RS29280	0.47	-1.0
6,505,226	+		PFLU_RS29280	0.47	-1.8
6,505,227	-		PFLU_RS29280	0.47	-1.6
6,505,227	-		PFLU_RS29280	0.47	-1.6
6,505,227	-		PFLU_RS29280	0.47	+0.6
6,505,227	-		PFLU_RS29280	0.47	-0.8
6,505,227	-		PFLU_RS29280	0.47	-1.7
6,505,227	-		PFLU_RS29280	0.47	-1.5
6,505,543	+		PFLU_RS29280	0.82	-1.3
6,505,543	+		PFLU_RS29280	0.82	+1.1
6,505,543	+		PFLU_RS29280	0.82	-1.3
6,505,543	+		PFLU_RS29280	0.82	+1.1
6,505,543	+		PFLU_RS29280	0.82	-2.3
6,505,543	+		PFLU_RS29280	0.82	-1.2
6,505,543	+		PFLU_RS29280	0.82	-2.3
6,505,543	+		PFLU_RS29280	0.82	+0.7
6,505,543	+		PFLU_RS29280	0.82	-0.5
6,505,544	-		PFLU_RS29280	0.82	+0.7
6,505,544	-		PFLU_RS29280	0.82	+1.1
6,505,544	-		PFLU_RS29280	0.82	+2.9
6,505,544	-		PFLU_RS29280	0.82	-2.0
6,505,544	-		PFLU_RS29280	0.82	-2.1
6,505,544	-		PFLU_RS29280	0.82	-1.6
6,505,544	-		PFLU_RS29280	0.82	-0.6
6,505,544	-		PFLU_RS29280	0.82	+0.1
6,505,544	-		PFLU_RS29280	0.82	-0.4
6,505,544	-		PFLU_RS29280	0.82	+0.3
6,505,544	-		PFLU_RS29280	0.82	-2.1
6,505,619	+				-0.9
6,505,619	+				+2.1
6,505,619	+				-1.5
6,505,619	+				-2.8
6,505,619	+				-0.6
6,505,619	+				+0.1
6,505,620	-				-0.7
6,505,620	-				-0.9
6,505,620	-				-0.5
6,505,620	-				+0.5
6,505,620	-				-2.1
6,505,620	-				-2.0
6,505,620	-				-0.7
6,505,620	-				+0.1
6,505,655	+				+1.1
6,505,655	+				+2.0
6,505,655	+				-0.7
6,505,655	+				+2.1
6,505,655	+				-2.0
6,505,655	+				+1.1
6,505,655	+				-1.7
6,505,655	+				+0.7
6,505,655	+				+0.1
6,505,656	-				-0.9
6,505,656	-				-0.2
6,505,656	-				-1.2
6,505,656	-				+0.1
6,505,656	-				+1.1
6,505,656	-				+2.1
6,505,656	-				-1.1
6,505,656	-				+0.7
6,505,656	-				+1.0
6,505,707	+				+0.1
6,505,707	+				-0.0
6,505,708	-				+0.3
6,505,708	-				-1.2
6,505,708	-				+0.4
6,505,708	-				-1.3
6,505,708	-				+2.1
6,505,708	-				+0.5
6,505,754	+				+0.9
6,505,754	+				-0.2
6,505,754	+				+0.0
6,505,754	+				-0.8
6,505,754	+				-2.3
6,505,754	+				-2.5
6,505,754	+				-1.1
6,505,754	+				+0.4
6,505,754	+				-2.3
6,505,754	+				-1.9
6,505,754	+				+1.3
6,505,754	+				-0.5
6,505,754	+				+3.1
6,505,754	+				-0.4
6,505,754	+				-2.4
6,505,754	+				+0.9
6,505,754	+				+1.3
6,505,754	+				+0.5
6,505,754	+				-1.1
6,505,754	+				+1.3
6,505,754	+				-2.1
6,505,754	+				-1.5
6,505,754	+				+0.9
6,505,754	+				-1.0
6,505,755	-				+1.4
6,505,755	-				+0.5
6,505,755	-				-1.6
6,505,755	-				-0.1
6,505,755	-				-1.0
6,505,755	-				-2.0
6,505,755	-				+1.6
6,505,755	-				-0.2
6,505,755	-				+0.1
6,505,755	-				+0.4
6,505,755	-				+0.8
6,505,755	-				-0.3
6,505,755	-				+1.4
6,505,755	-				-0.8
6,505,755	-				+0.3
6,505,755	-				+0.1
6,505,755	-				-1.1
6,505,755	-				+1.1
6,505,899	+		PFLU_RS29285	0.28	-0.9
6,505,899	+		PFLU_RS29285	0.28	+1.3
6,505,900	-		PFLU_RS29285	0.28	-1.1
6,505,900	-		PFLU_RS29285	0.28	-1.3
6,506,022	-		PFLU_RS29285	0.46	+0.6
6,506,125	+		PFLU_RS29285	0.61	+1.3
6,506,154	+		PFLU_RS29285	0.65	+1.0
6,506,302	-		PFLU_RS29285	0.86	+0.0
6,506,313	+		PFLU_RS29285	0.88	+0.5
6,506,395	+				+0.1
6,506,395	+				+0.1
6,506,395	+				-1.4
6,506,395	+				+0.2
6,506,395	+				+0.3
6,506,395	+				+0.3
6,506,396	-				-2.4
6,506,396	-				+0.7
6,506,396	-				-1.0
6,506,396	-				+0.8
6,506,396	-				+0.4
6,506,396	-				+1.3
6,506,396	-				+0.6
6,506,399	-				+0.6
6,506,437	+				-3.0
6,506,437	+				-0.7
6,506,437	+				+2.4
6,506,437	+				+0.5
6,506,437	+				+0.5
6,506,437	+				-0.8
6,506,437	+				+3.4
6,506,438	-				+1.6
6,506,454	+				+1.7
6,506,454	+				+1.1
6,506,454	+				+0.2
6,506,454	+				-0.2
6,506,454	+				+1.7
6,506,454	+				-0.2
6,506,454	+				+1.2
6,506,454	+				-2.6
6,506,454	+				+0.9
6,506,455	-				+0.3
6,506,455	-				+0.9
6,506,455	-				+1.4
6,506,455	-				+1.3
6,506,455	-				+1.3
6,506,455	-				+1.0
6,506,456	+				-0.7
6,506,456	+				+0.0
6,506,456	+				+0.7
6,506,456	+				-0.4
6,506,456	+				+0.0
6,506,456	+				-0.0
6,506,456	+				-0.8
6,506,456	+				+0.7
6,506,456	+				-0.2
6,506,456	+				-0.4
6,506,456	+				+0.0
6,506,456	+				+1.1
6,506,456	+				-2.0
6,506,456	+				+0.5
6,506,456	+				+0.3
6,506,456	+				+0.1
6,506,456	+				+0.4
6,506,457	-				-0.1
6,506,457	-				+0.5
6,506,457	-				+0.7
6,506,457	-				-2.0
6,506,457	-				-0.0
6,506,457	-				-0.9
6,506,457	-				+0.8
6,506,457	-				-0.0
6,506,457	-				-1.3
6,506,457	-				-0.7
6,506,457	-				-0.5
6,506,457	-				+0.7
6,506,457	-				+1.7
6,506,457	-				+1.2
6,506,457	-				+1.2
6,506,457	-				-2.0
6,506,471	-				+0.4
6,506,471	-				-1.3
6,506,471	-				-2.4
6,506,471	-				+1.4
6,506,471	-				+0.1
6,506,563	+				+0.5
6,506,563	+				+0.5
6,506,563	+				-1.6
6,506,564	-				+1.1
6,506,564	-				+0.8
6,506,564	-				+1.1
6,506,587	+				-0.2
6,506,587	+				-1.2
6,506,587	+				+1.3
6,506,588	-				+1.1
6,506,588	-				-0.5
6,506,588	-				+2.1
6,506,588	-				+0.6
6,506,588	-				+0.8
6,506,601	+				-0.2
6,506,601	+				+1.4
6,506,602	-				-0.7
6,506,641	+		PFLU_RS29290	0.18	-0.5