Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29195

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
6,488,181	+				-0.3
6,488,181	+				-0.2
6,488,181	+				-0.5
6,488,182	-				-0.6
6,488,182	-				+0.6
6,488,183	+				-0.2
6,488,225	-				+1.3
6,488,225	-				+1.0
6,488,268	+				-3.6
6,488,287	+				-0.5
6,488,288	-				-1.2
6,488,288	-				-0.0
6,488,288	-				+1.3
6,488,301	+				-1.7
6,488,315	-				-0.9
6,488,315	-				+0.1
6,488,315	-				-1.2
6,488,315	-				+0.4
6,488,334	+				+0.0
6,488,334	+				+0.9
6,488,334	+				-1.1
6,488,334	+				+0.0
6,488,334	+				+0.7
6,488,334	+				+1.1
6,488,335	-				+0.1
6,488,335	-				-0.1
6,488,335	-				-1.9
6,488,335	-				-0.2
6,488,335	-				+0.1
6,488,335	-				-0.2
6,488,335	-				-1.3
6,488,344	+				+0.5
6,488,345	-				-0.5
6,488,355	+				+0.2
6,488,356	-				-0.2
6,488,356	-				+0.2
6,488,427	+		PFLU_RS29190	0.10	-0.9
6,488,427	+		PFLU_RS29190	0.10	+0.4
6,488,427	+		PFLU_RS29190	0.10	+0.5
6,488,427	+		PFLU_RS29190	0.10	+1.7
6,488,427	+		PFLU_RS29190	0.10	+1.1
6,488,428	-		PFLU_RS29190	0.10	-0.2
6,488,449	+		PFLU_RS29190	0.14	+0.7
6,488,449	+		PFLU_RS29190	0.14	-0.5
6,488,450	-		PFLU_RS29190	0.15	+1.0
6,488,450	-		PFLU_RS29190	0.15	-0.9
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	-0.8
6,488,576	+		PFLU_RS29190	0.39	-0.9
6,488,576	+		PFLU_RS29190	0.39	+0.7
6,488,576	+		PFLU_RS29190	0.39	+1.0
6,488,576	+		PFLU_RS29190	0.39	-1.5
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	+2.5
6,488,576	+		PFLU_RS29190	0.39	+1.1
6,488,576	+		PFLU_RS29190	0.39	-0.2
6,488,576	+		PFLU_RS29190	0.39	+1.3
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	-0.5
6,488,576	+		PFLU_RS29190	0.39	+0.1
6,488,576	+		PFLU_RS29190	0.39	+0.0
6,488,576	+		PFLU_RS29190	0.39	+1.5
6,488,576	+		PFLU_RS29190	0.39	-0.4
6,488,576	+		PFLU_RS29190	0.39	+0.9
6,488,576	+		PFLU_RS29190	0.39	-2.3
6,488,576	+		PFLU_RS29190	0.39	+0.9
6,488,576	+		PFLU_RS29190	0.39	+0.3
6,488,576	+		PFLU_RS29190	0.39	+0.4
6,488,576	+		PFLU_RS29190	0.39	+0.4
6,488,576	+		PFLU_RS29190	0.39	+0.4
6,488,576	+		PFLU_RS29190	0.39	-0.7
6,488,576	+		PFLU_RS29190	0.39	-1.1
6,488,576	+		PFLU_RS29190	0.39	-0.4
6,488,576	+		PFLU_RS29190	0.39	-0.2
6,488,576	+		PFLU_RS29190	0.39	-1.1
6,488,577	-		PFLU_RS29190	0.39	-1.9
6,488,577	-		PFLU_RS29190	0.39	-0.4
6,488,577	-		PFLU_RS29190	0.39	+1.1
6,488,577	-		PFLU_RS29190	0.39	+0.9
6,488,577	-		PFLU_RS29190	0.39	+0.5
6,488,577	-		PFLU_RS29190	0.39	+1.8
6,488,577	-		PFLU_RS29190	0.39	-1.3
6,488,577	-		PFLU_RS29190	0.39	-0.2
6,488,577	-		PFLU_RS29190	0.39	+0.5
6,488,577	-		PFLU_RS29190	0.39	-2.3
6,488,577	-		PFLU_RS29190	0.39	+0.0
6,488,577	-		PFLU_RS29190	0.39	-2.5
6,488,577	-		PFLU_RS29190	0.39	-0.1
6,488,577	-		PFLU_RS29190	0.39	+1.2
6,488,577	-		PFLU_RS29190	0.39	-2.0
6,488,577	-		PFLU_RS29190	0.39	+0.5
6,488,577	-		PFLU_RS29190	0.39	-1.9
6,488,577	-		PFLU_RS29190	0.39	-0.6
6,488,577	-		PFLU_RS29190	0.39	+0.3
6,488,577	-		PFLU_RS29190	0.39	+0.8
6,488,626	+		PFLU_RS29190	0.48	+0.8
6,488,627	-		PFLU_RS29190	0.48	-1.1
6,488,632	+		PFLU_RS29190	0.49	+0.5
6,488,632	+		PFLU_RS29190	0.49	+0.2
6,488,632	+		PFLU_RS29190	0.49	-0.7
6,488,632	+		PFLU_RS29190	0.49	-1.3
6,488,633	-		PFLU_RS29190	0.50	+0.5
6,488,633	-		PFLU_RS29190	0.50	-0.9
6,488,633	-		PFLU_RS29190	0.50	-2.7
6,488,633	-		PFLU_RS29190	0.50	+1.8
6,488,633	-		PFLU_RS29190	0.50	+1.3
6,488,633	-		PFLU_RS29190	0.50	+0.9
6,488,633	-		PFLU_RS29190	0.50	+2.4
6,488,633	-		PFLU_RS29190	0.50	-1.2
6,488,700	+		PFLU_RS29190	0.62	-0.9
6,488,700	+		PFLU_RS29190	0.62	+0.3
6,488,700	+		PFLU_RS29190	0.62	+0.6
6,488,701	-		PFLU_RS29190	0.63	+1.7
6,488,706	+		PFLU_RS29190	0.64	-1.1
6,488,706	+		PFLU_RS29190	0.64	+2.1
6,488,707	-		PFLU_RS29190	0.64	+0.2
6,488,782	+		PFLU_RS29190	0.78	+1.3
6,488,782	+		PFLU_RS29190	0.78	-0.3
6,488,783	-		PFLU_RS29190	0.78	+0.7
6,488,783	-		PFLU_RS29190	0.78	+0.3
6,488,783	-		PFLU_RS29190	0.78	+0.8
6,488,783	-		PFLU_RS29190	0.78	-0.3
6,488,783	-		PFLU_RS29190	0.78	+0.8
6,488,819	+		PFLU_RS29190	0.85	-1.6
6,488,844	+				+1.6
6,488,918	+				+0.9
6,488,918	+				-1.2
6,488,918	+				+1.1
6,488,918	+				+0.1
6,488,919	-				-3.0
6,488,919	-				+0.8
6,488,919	-				+0.5
6,488,931	+				+0.1
6,488,931	+				-0.9
6,488,931	+				+0.9
6,488,932	-				+0.7
6,488,945	+				+0.7
6,488,957	+				+1.4
6,488,957	+				+1.2
6,488,957	+				+0.8
6,488,957	+				-1.4
6,488,957	+				-0.1
6,488,957	+				+1.3
6,488,957	+				+0.1
6,488,957	+				+0.8
6,488,957	+				+0.4
6,488,957	+				+0.6
6,488,957	+				-0.7
6,488,957	+				+1.5
6,488,958	-				+0.1
6,488,958	-				-0.5
6,488,958	-				+0.9
6,488,958	-				-0.7
6,488,958	-				+1.1
6,488,958	-				+1.2
6,488,958	-				+0.5
6,488,958	-				+1.1
6,488,958	-				+1.9
6,488,958	-				-0.6
6,488,958	-				+0.4
6,488,958	-				-0.5
6,488,958	-				+0.2
6,488,958	-				-0.5
6,488,961	+				+1.4
6,488,961	+				-0.9
6,488,961	+				+0.9
6,488,961	+				+1.0
6,488,961	+				+0.3
6,488,961	+				+1.7
6,488,961	+				-0.9
6,488,961	+				-3.1
6,488,961	+				+0.7
6,488,961	+				+2.5
6,488,961	+				-0.8
6,488,961	+				-0.2
6,488,962	-				-0.2
6,488,962	-				-0.1
6,488,962	-				-0.8
6,488,962	-				-0.0
6,488,962	-				-0.1
6,488,962	-				+1.8
6,488,964	+				+0.0
6,488,964	+				-0.2
6,488,964	+				+0.0
6,488,964	+				-0.3
6,488,964	+				-1.1
6,488,964	+				+2.0
6,488,965	-				+0.9
6,488,965	-				-0.6
6,488,965	-				-1.9
6,488,965	-				+0.1
6,489,057	+				+0.2
6,489,058	-				+0.2
6,489,109	-				+1.1
6,489,109	-				+0.4
6,489,110	+				+0.1
6,489,110	+				-0.1
6,489,110	+				+1.7
6,489,110	+				+0.2
6,489,110	+				-0.1
6,489,110	+				+1.7
6,489,110	+				+0.6
6,489,110	+				+0.5
6,489,110	+				-1.5
6,489,110	+				+0.1
6,489,110	+				-0.8
6,489,110	+				-1.6
6,489,110	+				-0.5
6,489,110	+				+0.1
6,489,110	+				-1.8
6,489,110	+				+1.4
6,489,110	+				+0.6
6,489,110	+				-0.1
6,489,110	+				-1.9
6,489,110	+				-0.2
6,489,110	+				-2.1
6,489,110	+				-0.6
6,489,110	+				+0.3
6,489,110	+				+1.5
6,489,110	+				-0.3
6,489,110	+				-1.0
6,489,110	+				+0.6
6,489,110	+				-0.5
6,489,111	-				-1.6
6,489,111	-				+0.1
6,489,111	-				+0.8
6,489,111	-				+0.7
6,489,111	-				+0.7
6,489,111	-				-0.4
6,489,111	-				-0.0
6,489,111	-				+1.0
6,489,111	-				+1.0
6,489,111	-				+0.6
6,489,111	-				-0.3
6,489,111	-				+0.0
6,489,111	-				+0.3
6,489,111	-				+1.4
6,489,111	-				+1.1
6,489,111	-				-1.5
6,489,111	-				-0.1
6,489,111	-				-1.1
6,489,111	-				-2.7
6,489,111	-				+1.7
6,489,111	-				+0.0
6,489,111	-				-2.0
6,489,111	-				+0.1
6,489,111	-				-0.6
6,489,111	-				+0.0
6,489,111	-				-0.5
6,489,111	-				+0.1
6,489,137	+				-1.0
6,489,137	+				-0.3
6,489,137	+				-0.2
6,489,137	+				-0.2
6,489,137	+				+0.8
6,489,138	-				+1.3
6,489,138	-				+0.9
6,489,221	+				-1.9
6,489,221	+				+1.7
6,489,221	+				-1.6
6,489,221	+				-1.0
6,489,222	-				-2.2
6,489,222	-				-0.1
6,489,222	-				+0.3
6,489,313	+		PFLU_RS29195	0.14	-0.7
6,489,314	-		PFLU_RS29195	0.14	-1.1
6,489,314	-		PFLU_RS29195	0.14	+1.9
6,489,333	+		PFLU_RS29195	0.15	-1.2
6,489,333	+		PFLU_RS29195	0.15	-0.5
6,489,334	-		PFLU_RS29195	0.16	-1.1
6,489,457	+		PFLU_RS29195	0.25	-1.7
6,489,457	+		PFLU_RS29195	0.25	-2.8
6,489,457	+		PFLU_RS29195	0.25	-0.2
6,489,458	-		PFLU_RS29195	0.26	+0.8
6,489,458	-		PFLU_RS29195	0.26	+0.1
6,489,458	-		PFLU_RS29195	0.26	-2.5
6,489,458	-		PFLU_RS29195	0.26	-1.1
6,489,458	-		PFLU_RS29195	0.26	-2.3
6,489,482	-		PFLU_RS29195	0.27	-1.1
6,489,557	-		PFLU_RS29195	0.33	+1.1
6,489,822	-		PFLU_RS29195	0.55	-1.3
6,489,855	+		PFLU_RS29195	0.57	-1.5
6,489,873	-		PFLU_RS29195	0.59	+1.4
6,490,015	+		PFLU_RS29195	0.70	-0.9
6,490,015	+		PFLU_RS29195	0.70	-0.5
6,490,015	+		PFLU_RS29195	0.70	+1.1
6,490,015	+		PFLU_RS29195	0.70	+0.1
6,490,015	+		PFLU_RS29195	0.70	-1.1
6,490,016	-		PFLU_RS29195	0.70	-0.7
6,490,016	-		PFLU_RS29195	0.70	-1.7
6,490,016	-		PFLU_RS29195	0.70	+0.5
6,490,018	+		PFLU_RS29195	0.71	+0.5
6,490,018	+		PFLU_RS29195	0.71	-0.2
6,490,018	+		PFLU_RS29195	0.71	+1.8
6,490,018	+		PFLU_RS29195	0.71	+0.3
6,490,018	+		PFLU_RS29195	0.71	+0.9
6,490,018	+		PFLU_RS29195	0.71	-1.3
6,490,018	+		PFLU_RS29195	0.71	+0.9
6,490,018	+		PFLU_RS29195	0.71	-0.7
6,490,018	+		PFLU_RS29195	0.71	-0.2
6,490,018	+		PFLU_RS29195	0.71	-0.2
6,490,018	+		PFLU_RS29195	0.71	+0.7
6,490,019	-		PFLU_RS29195	0.71	-1.6
6,490,019	-		PFLU_RS29195	0.71	-0.7
6,490,019	-		PFLU_RS29195	0.71	-0.2
6,490,019	-		PFLU_RS29195	0.71	-1.6
6,490,019	-		PFLU_RS29195	0.71	-0.7
6,490,019	-		PFLU_RS29195	0.71	+1.1
6,490,019	-		PFLU_RS29195	0.71	-0.5
6,490,019	-		PFLU_RS29195	0.71	-0.2
6,490,019	-		PFLU_RS29195	0.71	-0.9
6,490,019	-		PFLU_RS29195	0.71	-0.2
6,490,019	-		PFLU_RS29195	0.71	+0.8
6,490,125	+		PFLU_RS29195	0.79	+0.5
6,490,125	+		PFLU_RS29195	0.79	-0.2
6,490,125	+		PFLU_RS29195	0.79	-1.1
6,490,126	-		PFLU_RS29195	0.79	+0.2
6,490,126	-		PFLU_RS29195	0.79	-0.7
6,490,126	-		PFLU_RS29195	0.79	-0.7
6,490,126	-		PFLU_RS29195	0.79	+1.9
6,490,210	+		PFLU_RS29195	0.86	-0.9
6,490,210	+		PFLU_RS29195	0.86	-0.2
6,490,210	+		PFLU_RS29195	0.86	-0.7
6,490,211	-		PFLU_RS29195	0.86	+2.1
6,490,211	-		PFLU_RS29195	0.86	+0.9
6,490,211	-		PFLU_RS29195	0.86	-0.7
6,490,233	+		PFLU_RS29195	0.88	-0.9
6,490,233	+		PFLU_RS29195	0.88	+2.1
6,490,234	-		PFLU_RS29195	0.88	-0.7
6,490,234	-		PFLU_RS29195	0.88	-0.2
6,490,267	+				+0.1
6,490,267	+				-1.5
6,490,267	+				+2.4
6,490,268	-				-0.2
6,490,285	+				-0.2
6,490,289	+				-0.9
6,490,289	+				-0.9
6,490,290	-				-0.9
6,490,290	-				-1.7
6,490,290	-				-0.7
6,490,290	-				-0.2
6,490,290	-				+0.5
6,490,290	-				-1.1
6,490,290	-				-1.1
6,490,290	-				-0.2
6,490,290	-				+0.7
6,490,300	+				-1.7
6,490,301	-				+0.5
6,490,301	-				+1.4
6,490,323	+				-0.7
6,490,323	+				-1.1
6,490,323	+				-1.1
6,490,323	+				+0.9
6,490,324	-				+0.5
6,490,324	-				-0.2
6,490,324	-				-1.3
6,490,369	+				-0.7
6,490,369	+				-1.1
6,490,369	+				+0.4
6,490,369	+				+0.1
6,490,369	+				+0.8
6,490,369	+				-1.5
6,490,369	+				+0.8
6,490,369	+				+1.7
6,490,370	-				+0.2
6,490,370	-				-1.6
6,490,370	-				+0.1
6,490,370	-				+3.4
6,490,370	-				+0.9
6,490,389	+				-0.9
6,490,389	+				-0.5
6,490,389	+				+0.5
6,490,389	+				+0.0
6,490,455	+				-1.1
6,490,455	+				+0.4
6,490,455	+				-1.3
6,490,455	+				-1.1
6,490,455	+				+1.1
6,490,455	+				-1.2
6,490,455	+				-0.7
6,490,455	+				+0.5
6,490,455	+				+0.1
6,490,455	+				-1.7
6,490,456	-				-0.7
6,490,456	-				-0.9
6,490,456	-				-1.1
6,490,456	-				+1.1
6,490,617	+		PFLU_RS31205	0.12	-0.7
6,490,726	+		PFLU_RS31205	0.18	-0.9
6,490,726	+		PFLU_RS31205	0.18	-0.9
6,490,727	-		PFLU_RS31205	0.18	-0.3
6,490,756	-		PFLU_RS31205	0.19	+0.1
6,490,842	+		PFLU_RS31205	0.24	-1.1
6,490,842	+		PFLU_RS31205	0.24	-0.5
6,490,842	+		PFLU_RS31205	0.24	+2.1
6,490,843	-		PFLU_RS31205	0.24	-0.2
6,490,903	-		PFLU_RS31205	0.27	-1.6
6,490,903	-		PFLU_RS31205	0.27	-2.5
6,490,977	+		PFLU_RS31205	0.31	+0.1
6,490,977	+		PFLU_RS31205	0.31	+1.1
6,490,978	-		PFLU_RS31205	0.31	+1.5