Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24790

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24785 and PFLU_RS24790 overlap by 8 nucleotidesPFLU_RS24790 and PFLU_RS24795 are separated by 41 nucleotides PFLU_RS24785: PFLU_RS24785 - outer membrane protein assembly factor BamB, at 5,554,570 to 5,555,721 _RS24785 PFLU_RS24790: PFLU_RS24790 - tetratricopeptide repeat protein, at 5,555,714 to 5,556,355 _RS24790 PFLU_RS24795: PFLU_RS24795 - histidine--tRNA ligase, at 5,556,397 to 5,557,686 _RS24795 Position (kb) 5555 5556 5557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5554.719 kb on - strand, within PFLU_RS24785at 5554.719 kb on - strand, within PFLU_RS24785at 5554.736 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.742 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.746 kb on - strand, within PFLU_RS24785at 5554.859 kb on - strand, within PFLU_RS24785at 5554.859 kb on - strand, within PFLU_RS24785at 5554.859 kb on - strand, within PFLU_RS24785at 5554.859 kb on - strand, within PFLU_RS24785at 5554.859 kb on - strand, within PFLU_RS24785at 5554.863 kb on - strand, within PFLU_RS24785at 5554.863 kb on - strand, within PFLU_RS24785at 5554.863 kb on - strand, within PFLU_RS24785at 5554.863 kb on - strand, within PFLU_RS24785at 5554.863 kb on - strand, within PFLU_RS24785at 5554.896 kb on - strand, within PFLU_RS24785at 5554.896 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.965 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5554.977 kb on - strand, within PFLU_RS24785at 5555.110 kb on - strand, within PFLU_RS24785at 5555.140 kb on - strand, within PFLU_RS24785at 5555.140 kb on - strand, within PFLU_RS24785at 5555.199 kb on - strand, within PFLU_RS24785at 5555.199 kb on - strand, within PFLU_RS24785at 5555.408 kb on - strand, within PFLU_RS24785at 5555.408 kb on - strand, within PFLU_RS24785at 5555.483 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.544 kb on - strand, within PFLU_RS24785at 5555.644 kb on - strandat 5555.644 kb on - strandat 5555.754 kb on - strandat 5555.754 kb on - strandat 5555.754 kb on - strandat 5555.874 kb on - strand, within PFLU_RS24790at 5555.874 kb on - strand, within PFLU_RS24790at 5555.874 kb on - strand, within PFLU_RS24790at 5555.943 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.088 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.229 kb on - strand, within PFLU_RS24790at 5556.264 kb on - strand, within PFLU_RS24790at 5556.285 kb on - strand, within PFLU_RS24790at 5556.302 kb on - strandat 5556.347 kb on - strandat 5556.347 kb on - strandat 5556.347 kb on - strandat 5556.362 kb on - strandat 5556.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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5,554,719 - PFLU_RS24785 0.13 -1.3
5,554,719 - PFLU_RS24785 0.13 -1.1
5,554,736 - PFLU_RS24785 0.14 +1.1
5,554,742 - PFLU_RS24785 0.15 -1.0
5,554,742 - PFLU_RS24785 0.15 -1.1
5,554,742 - PFLU_RS24785 0.15 -0.9
5,554,742 - PFLU_RS24785 0.15 -0.9
5,554,742 - PFLU_RS24785 0.15 -2.4
5,554,742 - PFLU_RS24785 0.15 -2.7
5,554,742 - PFLU_RS24785 0.15 -2.4
5,554,742 - PFLU_RS24785 0.15 -0.8
5,554,746 - PFLU_RS24785 0.15 -1.6
5,554,746 - PFLU_RS24785 0.15 -0.1
5,554,746 - PFLU_RS24785 0.15 -2.8
5,554,746 - PFLU_RS24785 0.15 -1.6
5,554,746 - PFLU_RS24785 0.15 +0.6
5,554,746 - PFLU_RS24785 0.15 -2.4
5,554,746 - PFLU_RS24785 0.15 -0.6
5,554,746 - PFLU_RS24785 0.15 -2.6
5,554,746 - PFLU_RS24785 0.15 -0.7
5,554,746 - PFLU_RS24785 0.15 +0.1
5,554,746 - PFLU_RS24785 0.15 -1.1
5,554,746 - PFLU_RS24785 0.15 -0.3
5,554,746 - PFLU_RS24785 0.15 -1.1
5,554,746 - PFLU_RS24785 0.15 -0.6
5,554,746 - PFLU_RS24785 0.15 -1.0
5,554,859 - PFLU_RS24785 0.25 -0.9
5,554,859 - PFLU_RS24785 0.25 -0.2
5,554,859 - PFLU_RS24785 0.25 +0.7
5,554,859 - PFLU_RS24785 0.25 -0.4
5,554,859 - PFLU_RS24785 0.25 -0.1
5,554,863 - PFLU_RS24785 0.25 -0.6
5,554,863 - PFLU_RS24785 0.25 -0.6
5,554,863 - PFLU_RS24785 0.25 -2.5
5,554,863 - PFLU_RS24785 0.25 -2.8
5,554,863 - PFLU_RS24785 0.25 -2.1
5,554,896 - PFLU_RS24785 0.28 -2.2
5,554,896 - PFLU_RS24785 0.28 -2.3
5,554,965 - PFLU_RS24785 0.34 -1.6
5,554,965 - PFLU_RS24785 0.34 -1.1
5,554,965 - PFLU_RS24785 0.34 -1.4
5,554,965 - PFLU_RS24785 0.34 -0.9
5,554,965 - PFLU_RS24785 0.34 -0.3
5,554,965 - PFLU_RS24785 0.34 -0.3
5,554,965 - PFLU_RS24785 0.34 -0.9
5,554,977 - PFLU_RS24785 0.35 -2.1
5,554,977 - PFLU_RS24785 0.35 -0.6
5,554,977 - PFLU_RS24785 0.35 -3.5
5,554,977 - PFLU_RS24785 0.35 -1.9
5,554,977 - PFLU_RS24785 0.35 +1.5
5,554,977 - PFLU_RS24785 0.35 -2.7
5,555,110 - PFLU_RS24785 0.47 -0.5
5,555,140 - PFLU_RS24785 0.49 -0.3
5,555,140 - PFLU_RS24785 0.49 +0.1
5,555,199 - PFLU_RS24785 0.55 -0.3
5,555,199 - PFLU_RS24785 0.55 -2.7
5,555,408 - PFLU_RS24785 0.73 -1.1
5,555,408 - PFLU_RS24785 0.73 -2.8
5,555,483 - PFLU_RS24785 0.79 -0.3
5,555,544 - PFLU_RS24785 0.85 -2.2
5,555,544 - PFLU_RS24785 0.85 -0.2
5,555,544 - PFLU_RS24785 0.85 -0.6
5,555,544 - PFLU_RS24785 0.85 -2.0
5,555,544 - PFLU_RS24785 0.85 -1.2
5,555,544 - PFLU_RS24785 0.85 -2.3
5,555,544 - PFLU_RS24785 0.85 -3.1
5,555,544 - PFLU_RS24785 0.85 -1.6
5,555,544 - PFLU_RS24785 0.85 -0.4
5,555,544 - PFLU_RS24785 0.85 -2.0
5,555,544 - PFLU_RS24785 0.85 +0.1
5,555,544 - PFLU_RS24785 0.85 -1.3
5,555,544 - PFLU_RS24785 0.85 -1.5
5,555,544 - PFLU_RS24785 0.85 -1.1
5,555,544 - PFLU_RS24785 0.85 -2.8
5,555,544 - PFLU_RS24785 0.85 -2.3
5,555,544 - PFLU_RS24785 0.85 -2.6
5,555,544 - PFLU_RS24785 0.85 -2.4
5,555,544 - PFLU_RS24785 0.85 -1.8
5,555,544 - PFLU_RS24785 0.85 -2.6
5,555,544 - PFLU_RS24785 0.85 -0.0
5,555,644 - +1.3
5,555,644 - -3.0
5,555,754 - +1.8
5,555,754 - +2.4
5,555,754 - -0.4
5,555,874 - PFLU_RS24790 0.25 -2.3
5,555,874 - PFLU_RS24790 0.25 -1.6
5,555,874 - PFLU_RS24790 0.25 -1.6
5,555,943 - PFLU_RS24790 0.36 -0.3
5,556,088 - PFLU_RS24790 0.58 -1.5
5,556,088 - PFLU_RS24790 0.58 +0.1
5,556,088 - PFLU_RS24790 0.58 -2.5
5,556,088 - PFLU_RS24790 0.58 -0.6
5,556,088 - PFLU_RS24790 0.58 -1.6
5,556,088 - PFLU_RS24790 0.58 +0.4
5,556,088 - PFLU_RS24790 0.58 -1.8
5,556,088 - PFLU_RS24790 0.58 +0.7
5,556,229 - PFLU_RS24790 0.80 -1.9
5,556,229 - PFLU_RS24790 0.80 -1.9
5,556,229 - PFLU_RS24790 0.80 -2.3
5,556,229 - PFLU_RS24790 0.80 -0.9
5,556,229 - PFLU_RS24790 0.80 -0.8
5,556,229 - PFLU_RS24790 0.80 -1.6
5,556,229 - PFLU_RS24790 0.80 +1.0
5,556,229 - PFLU_RS24790 0.80 -2.5
5,556,229 - PFLU_RS24790 0.80 -0.3
5,556,264 - PFLU_RS24790 0.86 +0.7
5,556,285 - PFLU_RS24790 0.89 +0.7
5,556,302 - -0.3
5,556,347 - -1.5
5,556,347 - -1.3
5,556,347 - -1.5
5,556,362 - -1.3
5,556,362 - -1.8

Or see this region's nucleotide sequence