Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24325

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24315 and PFLU_RS24320 overlap by 11 nucleotidesPFLU_RS24320 and PFLU_RS24325 are separated by 127 nucleotidesPFLU_RS24325 and PFLU_RS24330 overlap by 4 nucleotides PFLU_RS24315: PFLU_RS24315 - HAMP domain-containing protein, at 5,443,192 to 5,444,661 _RS24315 PFLU_RS24320: PFLU_RS24320 - response regulator transcription factor, at 5,444,651 to 5,445,385 _RS24320 PFLU_RS24325: PFLU_RS24325 - glucokinase, at 5,445,513 to 5,446,469 _RS24325 PFLU_RS24330: PFLU_RS24330 - phosphogluconate dehydratase, at 5,446,466 to 5,448,292 _RS24330 Position (kb) 5445 5446 5447Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5444.867 kb on + strand, within PFLU_RS24320at 5444.944 kb on + strand, within PFLU_RS24320at 5444.944 kb on + strand, within PFLU_RS24320at 5444.944 kb on + strand, within PFLU_RS24320at 5444.945 kb on - strand, within PFLU_RS24320at 5445.072 kb on + strand, within PFLU_RS24320at 5445.072 kb on + strand, within PFLU_RS24320at 5445.072 kb on + strand, within PFLU_RS24320at 5445.072 kb on + strand, within PFLU_RS24320at 5445.072 kb on + strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.073 kb on - strand, within PFLU_RS24320at 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.315 kb on + strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.316 kb on - strandat 5445.370 kb on + strandat 5445.371 kb on - strandat 5445.377 kb on + strandat 5445.377 kb on + strandat 5445.377 kb on + strandat 5445.378 kb on - strandat 5445.378 kb on - strandat 5445.403 kb on + strandat 5445.404 kb on - strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.412 kb on + strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.413 kb on - strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.459 kb on + strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.460 kb on - strandat 5445.515 kb on - strandat 5445.515 kb on - strandat 5445.563 kb on - strandat 5445.601 kb on + strandat 5445.601 kb on + strandat 5445.601 kb on + strandat 5445.602 kb on - strandat 5445.602 kb on - strandat 5445.693 kb on - strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.694 kb on + strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.695 kb on - strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.771 kb on + strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.772 kb on - strand, within PFLU_RS24325at 5445.872 kb on - strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.934 kb on + strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5445.935 kb on - strand, within PFLU_RS24325at 5446.043 kb on + strand, within PFLU_RS24325at 5446.044 kb on - strand, within PFLU_RS24325at 5446.044 kb on - strand, within PFLU_RS24325at 5446.253 kb on + strand, within PFLU_RS24325at 5446.253 kb on + strand, within PFLU_RS24325at 5446.253 kb on + strand, within PFLU_RS24325at 5446.253 kb on + strand, within PFLU_RS24325at 5446.254 kb on - strand, within PFLU_RS24325at 5446.336 kb on + strand, within PFLU_RS24325at 5446.336 kb on + strand, within PFLU_RS24325at 5446.336 kb on + strand, within PFLU_RS24325at 5446.337 kb on - strand, within PFLU_RS24325at 5446.337 kb on - strand, within PFLU_RS24325at 5446.462 kb on - strandat 5446.462 kb on - strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.471 kb on + strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.472 kb on - strandat 5446.492 kb on + strandat 5446.492 kb on + strandat 5446.493 kb on - strandat 5446.493 kb on - strandat 5446.537 kb on + strandat 5446.537 kb on + strandat 5446.537 kb on + strandat 5446.538 kb on - strandat 5446.538 kb on - strandat 5446.538 kb on - strandat 5446.538 kb on - strandat 5446.627 kb on + strandat 5446.627 kb on + strandat 5446.627 kb on + strandat 5446.627 kb on + strandat 5446.628 kb on - strandat 5446.772 kb on + strand, within PFLU_RS24330at 5446.773 kb on - strand, within PFLU_RS24330at 5446.773 kb on - strand, within PFLU_RS24330at 5447.283 kb on + strand, within PFLU_RS24330at 5447.283 kb on + strand, within PFLU_RS24330at 5447.284 kb on - strand, within PFLU_RS24330at 5447.284 kb on - strand, within PFLU_RS24330

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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5,444,867 + PFLU_RS24320 0.29 +0.4
5,444,944 + PFLU_RS24320 0.40 -1.1
5,444,944 + PFLU_RS24320 0.40 +0.5
5,444,944 + PFLU_RS24320 0.40 +0.5
5,444,945 - PFLU_RS24320 0.40 -1.3
5,445,072 + PFLU_RS24320 0.57 -1.1
5,445,072 + PFLU_RS24320 0.57 -0.2
5,445,072 + PFLU_RS24320 0.57 -1.3
5,445,072 + PFLU_RS24320 0.57 +0.5
5,445,072 + PFLU_RS24320 0.57 -2.4
5,445,073 - PFLU_RS24320 0.57 -0.3
5,445,073 - PFLU_RS24320 0.57 -1.1
5,445,073 - PFLU_RS24320 0.57 -1.8
5,445,073 - PFLU_RS24320 0.57 -2.6
5,445,073 - PFLU_RS24320 0.57 -0.7
5,445,073 - PFLU_RS24320 0.57 +1.9
5,445,315 + -0.4
5,445,315 + -3.0
5,445,315 + -0.5
5,445,315 + -0.6
5,445,315 + -2.1
5,445,315 + -1.5
5,445,315 + +0.7
5,445,315 + -1.8
5,445,315 + -2.8
5,445,315 + -1.5
5,445,315 + -0.9
5,445,316 - -1.6
5,445,316 - -0.1
5,445,316 - -2.6
5,445,316 - -0.1
5,445,316 - -0.7
5,445,316 - -2.1
5,445,316 - +0.1
5,445,316 - -0.1
5,445,316 - -1.3
5,445,316 - +0.1
5,445,316 - -1.2
5,445,370 + -1.6
5,445,371 - +0.0
5,445,377 + -0.8
5,445,377 + -0.9
5,445,377 + +2.7
5,445,378 - +1.2
5,445,378 - -1.1
5,445,403 + -1.9
5,445,404 - -3.6
5,445,412 + -0.1
5,445,412 + -0.5
5,445,412 + +0.6
5,445,412 + +0.4
5,445,412 + +0.0
5,445,412 + -1.2
5,445,412 + -1.1
5,445,412 + -1.9
5,445,412 + -0.9
5,445,412 + -0.1
5,445,412 + +0.9
5,445,412 + -0.7
5,445,413 - -0.6
5,445,413 - +0.3
5,445,413 - +2.7
5,445,413 - +2.0
5,445,413 - +2.4
5,445,413 - +1.8
5,445,413 - +2.9
5,445,413 - +4.5
5,445,459 + +2.3
5,445,459 + +0.7
5,445,459 + +0.6
5,445,459 + -1.1
5,445,459 + -0.5
5,445,459 + +2.4
5,445,459 + -0.6
5,445,459 + +0.2
5,445,459 + -0.5
5,445,459 + +0.4
5,445,460 - +0.1
5,445,460 - +2.6
5,445,460 - +0.2
5,445,460 - +0.4
5,445,460 - +0.9
5,445,460 - +0.8
5,445,460 - +1.0
5,445,460 - +1.3
5,445,515 - +2.0
5,445,515 - -0.5
5,445,563 - -0.8
5,445,601 + +0.9
5,445,601 + -0.3
5,445,601 + +2.7
5,445,602 - -0.8
5,445,602 - +0.7
5,445,693 - PFLU_RS24325 0.19 -1.5
5,445,694 + PFLU_RS24325 0.19 -0.6
5,445,694 + PFLU_RS24325 0.19 -2.2
5,445,694 + PFLU_RS24325 0.19 -1.2
5,445,694 + PFLU_RS24325 0.19 +0.4
5,445,694 + PFLU_RS24325 0.19 -1.4
5,445,694 + PFLU_RS24325 0.19 -1.7
5,445,694 + PFLU_RS24325 0.19 -0.3
5,445,694 + PFLU_RS24325 0.19 -2.0
5,445,694 + PFLU_RS24325 0.19 -2.6
5,445,694 + PFLU_RS24325 0.19 -3.2
5,445,694 + PFLU_RS24325 0.19 -1.3
5,445,694 + PFLU_RS24325 0.19 -1.6
5,445,694 + PFLU_RS24325 0.19 -2.5
5,445,694 + PFLU_RS24325 0.19 +2.1
5,445,694 + PFLU_RS24325 0.19 -1.3
5,445,694 + PFLU_RS24325 0.19 -2.1
5,445,694 + PFLU_RS24325 0.19 -0.3
5,445,694 + PFLU_RS24325 0.19 -2.9
5,445,694 + PFLU_RS24325 0.19 -1.6
5,445,694 + PFLU_RS24325 0.19 -2.5
5,445,694 + PFLU_RS24325 0.19 -1.7
5,445,694 + PFLU_RS24325 0.19 -2.4
5,445,694 + PFLU_RS24325 0.19 -0.9
5,445,694 + PFLU_RS24325 0.19 -0.3
5,445,694 + PFLU_RS24325 0.19 -2.8
5,445,694 + PFLU_RS24325 0.19 -2.0
5,445,694 + PFLU_RS24325 0.19 -2.0
5,445,694 + PFLU_RS24325 0.19 -3.3
5,445,694 + PFLU_RS24325 0.19 -1.9
5,445,694 + PFLU_RS24325 0.19 -2.2
5,445,694 + PFLU_RS24325 0.19 -2.8
5,445,694 + PFLU_RS24325 0.19 -1.3
5,445,694 + PFLU_RS24325 0.19 -1.8
5,445,694 + PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 -1.3
5,445,695 - PFLU_RS24325 0.19 -2.0
5,445,695 - PFLU_RS24325 0.19 -1.1
5,445,695 - PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 +1.1
5,445,695 - PFLU_RS24325 0.19 -0.6
5,445,695 - PFLU_RS24325 0.19 -2.1
5,445,695 - PFLU_RS24325 0.19 -3.4
5,445,695 - PFLU_RS24325 0.19 -2.6
5,445,695 - PFLU_RS24325 0.19 -1.8
5,445,695 - PFLU_RS24325 0.19 +0.8
5,445,695 - PFLU_RS24325 0.19 -2.4
5,445,695 - PFLU_RS24325 0.19 -1.6
5,445,695 - PFLU_RS24325 0.19 -1.2
5,445,695 - PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 +0.1
5,445,695 - PFLU_RS24325 0.19 -1.9
5,445,695 - PFLU_RS24325 0.19 -2.1
5,445,695 - PFLU_RS24325 0.19 -3.4
5,445,695 - PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 -1.8
5,445,695 - PFLU_RS24325 0.19 -1.4
5,445,695 - PFLU_RS24325 0.19 -1.5
5,445,695 - PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 -2.0
5,445,695 - PFLU_RS24325 0.19 -0.7
5,445,695 - PFLU_RS24325 0.19 -0.1
5,445,695 - PFLU_RS24325 0.19 -0.9
5,445,695 - PFLU_RS24325 0.19 -1.9
5,445,695 - PFLU_RS24325 0.19 -1.9
5,445,771 + PFLU_RS24325 0.27 -0.6
5,445,771 + PFLU_RS24325 0.27 -1.1
5,445,771 + PFLU_RS24325 0.27 +0.7
5,445,771 + PFLU_RS24325 0.27 -1.0
5,445,771 + PFLU_RS24325 0.27 -3.7
5,445,771 + PFLU_RS24325 0.27 -1.3
5,445,772 - PFLU_RS24325 0.27 -1.1
5,445,772 - PFLU_RS24325 0.27 -1.9
5,445,772 - PFLU_RS24325 0.27 -1.0
5,445,772 - PFLU_RS24325 0.27 -2.5
5,445,772 - PFLU_RS24325 0.27 -1.3
5,445,772 - PFLU_RS24325 0.27 +1.5
5,445,772 - PFLU_RS24325 0.27 +0.1
5,445,772 - PFLU_RS24325 0.27 -0.3
5,445,872 - PFLU_RS24325 0.38 -1.8
5,445,934 + PFLU_RS24325 0.44 +0.1
5,445,934 + PFLU_RS24325 0.44 -2.9
5,445,934 + PFLU_RS24325 0.44 -2.0
5,445,934 + PFLU_RS24325 0.44 -1.5
5,445,934 + PFLU_RS24325 0.44 -0.5
5,445,934 + PFLU_RS24325 0.44 -2.8
5,445,934 + PFLU_RS24325 0.44 -2.3
5,445,934 + PFLU_RS24325 0.44 -0.3
5,445,935 - PFLU_RS24325 0.44 -1.0
5,445,935 - PFLU_RS24325 0.44 -0.3
5,445,935 - PFLU_RS24325 0.44 -1.3
5,445,935 - PFLU_RS24325 0.44 -1.6
5,445,935 - PFLU_RS24325 0.44 -3.2
5,445,935 - PFLU_RS24325 0.44 -2.4
5,445,935 - PFLU_RS24325 0.44 -3.0
5,445,935 - PFLU_RS24325 0.44 -0.4
5,445,935 - PFLU_RS24325 0.44 -2.5
5,446,043 + PFLU_RS24325 0.55 -2.6
5,446,044 - PFLU_RS24325 0.55 -1.9
5,446,044 - PFLU_RS24325 0.55 -2.4
5,446,253 + PFLU_RS24325 0.77 -0.8
5,446,253 + PFLU_RS24325 0.77 -0.3
5,446,253 + PFLU_RS24325 0.77 -1.0
5,446,253 + PFLU_RS24325 0.77 -3.0
5,446,254 - PFLU_RS24325 0.77 +0.4
5,446,336 + PFLU_RS24325 0.86 -3.1
5,446,336 + PFLU_RS24325 0.86 -2.4
5,446,336 + PFLU_RS24325 0.86 -2.1
5,446,337 - PFLU_RS24325 0.86 -1.9
5,446,337 - PFLU_RS24325 0.86 -2.8
5,446,462 - +0.3
5,446,462 - +0.7
5,446,471 + -1.6
5,446,471 + -1.6
5,446,471 + -3.4
5,446,471 + -0.5
5,446,471 + -3.8
5,446,471 + -1.8
5,446,471 + -1.9
5,446,471 + -1.9
5,446,471 + -2.0
5,446,472 - -2.1
5,446,472 - -2.7
5,446,472 - -2.0
5,446,472 - -0.9
5,446,472 - -1.5
5,446,472 - -3.2
5,446,472 - -0.9
5,446,472 - -0.9
5,446,472 - +0.1
5,446,472 - -2.1
5,446,472 - -1.2
5,446,472 - -1.5
5,446,472 - -1.3
5,446,492 + +0.7
5,446,492 + -0.1
5,446,493 - -1.3
5,446,493 - +0.7
5,446,537 + -1.5
5,446,537 + -1.3
5,446,537 + -0.9
5,446,538 - -0.6
5,446,538 - +1.7
5,446,538 - -0.3
5,446,538 - -1.5
5,446,627 + +0.1
5,446,627 + -0.3
5,446,627 + -2.0
5,446,627 + -1.8
5,446,628 - -1.3
5,446,772 + PFLU_RS24330 0.17 -0.3
5,446,773 - PFLU_RS24330 0.17 +0.1
5,446,773 - PFLU_RS24330 0.17 -1.3
5,447,283 + PFLU_RS24330 0.45 -1.8
5,447,283 + PFLU_RS24330 0.45 -2.0
5,447,284 - PFLU_RS24330 0.45 -0.9
5,447,284 - PFLU_RS24330 0.45 -1.6

Or see this region's nucleotide sequence