Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24315

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
5,442,210	+				-1.3
5,442,211	-				-0.1
5,442,225	+				+0.1
5,442,225	+				-0.1
5,442,226	-				-1.0
5,442,226	-				-1.5
5,442,226	-				-1.4
5,442,244	+		PFLU_RS24310	0.11	+0.3
5,442,244	+		PFLU_RS24310	0.11	+0.2
5,442,245	-		PFLU_RS24310	0.11	+0.4
5,442,269	-		PFLU_RS24310	0.14	+1.3
5,442,382	+		PFLU_RS24310	0.26	-0.5
5,442,382	+		PFLU_RS24310	0.26	+1.0
5,442,397	+		PFLU_RS24310	0.28	+0.2
5,442,397	+		PFLU_RS24310	0.28	+0.1
5,442,397	+		PFLU_RS24310	0.28	+0.2
5,442,397	+		PFLU_RS24310	0.28	-0.3
5,442,397	+		PFLU_RS24310	0.28	+1.1
5,442,397	+		PFLU_RS24310	0.28	+0.2
5,442,397	+		PFLU_RS24310	0.28	+0.9
5,442,397	+		PFLU_RS24310	0.28	-1.6
5,442,397	+		PFLU_RS24310	0.28	+0.3
5,442,398	-		PFLU_RS24310	0.28	-1.1
5,442,398	-		PFLU_RS24310	0.28	-0.0
5,442,398	-		PFLU_RS24310	0.28	-2.3
5,442,398	-		PFLU_RS24310	0.28	+1.9
5,442,398	-		PFLU_RS24310	0.28	+0.9
5,442,398	-		PFLU_RS24310	0.28	+1.2
5,442,398	-		PFLU_RS24310	0.28	-2.0
5,442,398	-		PFLU_RS24310	0.28	-0.1
5,442,398	-		PFLU_RS24310	0.28	+1.7
5,442,398	-		PFLU_RS24310	0.28	+0.9
5,442,398	-		PFLU_RS24310	0.28	-1.5
5,442,398	-		PFLU_RS24310	0.28	+0.9
5,442,398	-		PFLU_RS24310	0.28	-1.2
5,442,398	-		PFLU_RS24310	0.28	+0.7
5,442,398	-		PFLU_RS24310	0.28	-1.6
5,442,398	-		PFLU_RS24310	0.28	+0.5
5,442,402	-		PFLU_RS24310	0.28	+0.4
5,442,402	-		PFLU_RS24310	0.28	-2.5
5,442,474	-		PFLU_RS24310	0.36	+0.3
5,442,484	-		PFLU_RS24310	0.37	+0.5
5,442,565	+		PFLU_RS24310	0.46	+1.4
5,442,565	+		PFLU_RS24310	0.46	+2.4
5,442,565	+		PFLU_RS24310	0.46	-0.8
5,442,565	+		PFLU_RS24310	0.46	+0.3
5,442,565	+		PFLU_RS24310	0.46	+0.5
5,442,565	+		PFLU_RS24310	0.46	-0.7
5,442,565	+		PFLU_RS24310	0.46	-1.1
5,442,565	+		PFLU_RS24310	0.46	-2.5
5,442,565	+		PFLU_RS24310	0.46	+0.7
5,442,565	+		PFLU_RS24310	0.46	+0.5
5,442,565	+		PFLU_RS24310	0.46	-1.4
5,442,565	+		PFLU_RS24310	0.46	+0.9
5,442,565	+		PFLU_RS24310	0.46	-1.6
5,442,565	+		PFLU_RS24310	0.46	+0.8
5,442,565	+		PFLU_RS24310	0.46	+0.6
5,442,565	+		PFLU_RS24310	0.46	-1.1
5,442,565	+		PFLU_RS24310	0.46	+0.4
5,442,565	+		PFLU_RS24310	0.46	+0.3
5,442,565	+		PFLU_RS24310	0.46	+1.8
5,442,565	+		PFLU_RS24310	0.46	+0.9
5,442,565	+		PFLU_RS24310	0.46	+0.6
5,442,565	+		PFLU_RS24310	0.46	+0.5
5,442,565	+		PFLU_RS24310	0.46	-1.1
5,442,565	+		PFLU_RS24310	0.46	-1.1
5,442,565	+		PFLU_RS24310	0.46	-1.4
5,442,565	+		PFLU_RS24310	0.46	-0.6
5,442,565	+		PFLU_RS24310	0.46	-0.6
5,442,565	+		PFLU_RS24310	0.46	-0.9
5,442,566	-		PFLU_RS24310	0.46	+1.6
5,442,566	-		PFLU_RS24310	0.46	+1.5
5,442,566	-		PFLU_RS24310	0.46	-0.6
5,442,566	-		PFLU_RS24310	0.46	+0.5
5,442,566	-		PFLU_RS24310	0.46	+1.9
5,442,566	-		PFLU_RS24310	0.46	+0.8
5,442,566	-		PFLU_RS24310	0.46	-0.9
5,442,566	-		PFLU_RS24310	0.46	-0.2
5,442,566	-		PFLU_RS24310	0.46	+1.0
5,442,566	-		PFLU_RS24310	0.46	+0.4
5,442,566	-		PFLU_RS24310	0.46	+1.3
5,442,566	-		PFLU_RS24310	0.46	+0.3
5,442,566	-		PFLU_RS24310	0.46	+0.2
5,442,628	-		PFLU_RS24310	0.53	+0.9
5,442,640	-		PFLU_RS24310	0.54	-0.6
5,442,716	-		PFLU_RS24310	0.62	-0.2
5,442,716	-		PFLU_RS24310	0.62	+0.2
5,442,784	+		PFLU_RS24310	0.69	-0.1
5,442,784	+		PFLU_RS24310	0.69	+4.3
5,442,784	+		PFLU_RS24310	0.69	-0.5
5,442,784	+		PFLU_RS24310	0.69	-2.6
5,442,784	+		PFLU_RS24310	0.69	-1.1
5,442,784	+		PFLU_RS24310	0.69	-0.1
5,442,784	+		PFLU_RS24310	0.69	-0.1
5,442,784	+		PFLU_RS24310	0.69	-0.1
5,442,784	+		PFLU_RS24310	0.69	+0.9
5,442,785	-		PFLU_RS24310	0.69	-1.1
5,442,785	-		PFLU_RS24310	0.69	+0.2
5,442,785	-		PFLU_RS24310	0.69	-2.1
5,442,785	-		PFLU_RS24310	0.69	+1.2
5,442,785	-		PFLU_RS24310	0.69	-1.3
5,442,785	-		PFLU_RS24310	0.69	-1.8
5,442,785	-		PFLU_RS24310	0.69	-0.3
5,442,785	-		PFLU_RS24310	0.69	+1.9
5,442,785	-		PFLU_RS24310	0.69	+0.9
5,442,785	-		PFLU_RS24310	0.69	+1.4
5,442,785	-		PFLU_RS24310	0.69	-0.3
5,442,785	-		PFLU_RS24310	0.69	+0.2
5,442,785	-		PFLU_RS24310	0.69	+0.8
5,442,785	-		PFLU_RS24310	0.69	-0.5
5,442,785	-		PFLU_RS24310	0.69	+0.1
5,442,889	+		PFLU_RS24310	0.81	-0.6
5,442,889	+		PFLU_RS24310	0.81	-0.9
5,442,890	-		PFLU_RS24310	0.81	+1.0
5,442,890	-		PFLU_RS24310	0.81	+0.8
5,442,890	-		PFLU_RS24310	0.81	+0.7
5,442,977	-				-0.7
5,443,006	+				-0.4
5,443,007	-				-1.3
5,443,007	-				-0.8
5,443,007	-				+1.4
5,443,124	+				+0.5
5,443,124	+				+0.1
5,443,124	+				-1.5
5,443,125	-				+0.9
5,443,125	-				+0.8
5,443,125	-				+1.0
5,443,125	-				+0.3
5,443,125	-				+2.1
5,443,131	+				-0.1
5,443,131	+				-0.4
5,443,131	+				+0.3
5,443,131	+				-1.2
5,443,131	+				+1.1
5,443,131	+				-2.3
5,443,131	+				-0.1
5,443,131	+				-1.0
5,443,131	+				+1.0
5,443,131	+				+1.0
5,443,132	-				+1.2
5,443,132	-				-0.6
5,443,132	-				-1.3
5,443,132	-				-0.1
5,443,132	-				-2.4
5,443,132	-				+0.2
5,443,132	-				-1.6
5,443,132	-				-0.3
5,443,145	+				-2.0
5,443,145	+				+0.5
5,443,145	+				-0.5
5,443,145	+				+0.7
5,443,145	+				-0.8
5,443,145	+				-1.0
5,443,145	+				+0.9
5,443,145	+				-0.6
5,443,145	+				-2.1
5,443,145	+				+0.9
5,443,145	+				-0.5
5,443,145	+				-0.1
5,443,145	+				+1.5
5,443,145	+				-0.1
5,443,145	+				+0.1
5,443,145	+				+1.0
5,443,145	+				-0.9
5,443,145	+				-0.8
5,443,145	+				-0.5
5,443,145	+				+0.8
5,443,145	+				+1.7
5,443,145	+				-1.6
5,443,145	+				+0.4
5,443,145	+				-0.3
5,443,145	+				+0.3
5,443,145	+				-0.1
5,443,145	+				+0.8
5,443,145	+				+1.3
5,443,145	+				-0.5
5,443,146	-				+0.7
5,443,146	-				-1.3
5,443,146	-				+1.4
5,443,146	-				+0.6
5,443,146	-				-1.2
5,443,146	-				+1.2
5,443,146	-				+0.3
5,443,146	-				-0.5
5,443,146	-				-1.1
5,443,146	-				+0.1
5,443,146	-				+0.5
5,443,146	-				+1.1
5,443,146	-				+0.4
5,443,146	-				+1.0
5,443,146	-				+0.4
5,443,146	-				+0.9
5,443,146	-				-1.1
5,443,146	-				-0.7
5,443,146	-				+0.5
5,443,146	-				+2.1
5,443,146	-				-0.8
5,443,146	-				+1.0
5,443,146	-				-1.9
5,443,198	+				-0.6
5,443,210	+				-0.1
5,443,210	+				-1.3
5,443,210	+				-0.6
5,443,275	+				+3.3
5,443,276	-				+1.7
5,443,457	+		PFLU_RS24315	0.18	-0.3
5,443,457	+		PFLU_RS24315	0.18	-0.3
5,443,458	-		PFLU_RS24315	0.18	+1.7
5,443,520	+		PFLU_RS24315	0.22	-1.6
5,443,521	-		PFLU_RS24315	0.22	-3.0
5,443,521	-		PFLU_RS24315	0.22	-1.6
5,443,521	-		PFLU_RS24315	0.22	-0.7
5,443,820	+		PFLU_RS24315	0.43	-1.0
5,443,821	-		PFLU_RS24315	0.43	+0.2
5,443,861	+		PFLU_RS24315	0.46	+0.1
5,443,861	+		PFLU_RS24315	0.46	+0.8
5,443,862	-		PFLU_RS24315	0.46	-2.6
5,443,862	-		PFLU_RS24315	0.46	-1.3
5,444,019	+		PFLU_RS24315	0.56	-0.8
5,444,066	+		PFLU_RS24315	0.59	-1.2
5,444,066	+		PFLU_RS24315	0.59	+0.2
5,444,067	-		PFLU_RS24315	0.60	-2.1
5,444,067	-		PFLU_RS24315	0.60	-1.8
5,444,067	-		PFLU_RS24315	0.60	-0.5
5,444,093	+		PFLU_RS24315	0.61	+0.1
5,444,093	+		PFLU_RS24315	0.61	-2.3
5,444,093	+		PFLU_RS24315	0.61	+0.3
5,444,093	+		PFLU_RS24315	0.61	+0.7
5,444,093	+		PFLU_RS24315	0.61	-1.0
5,444,093	+		PFLU_RS24315	0.61	-1.9
5,444,093	+		PFLU_RS24315	0.61	-2.2
5,444,093	+		PFLU_RS24315	0.61	-0.4
5,444,093	+		PFLU_RS24315	0.61	-1.6
5,444,093	+		PFLU_RS24315	0.61	-2.5
5,444,093	+		PFLU_RS24315	0.61	-1.3
5,444,093	+		PFLU_RS24315	0.61	+0.3
5,444,094	-		PFLU_RS24315	0.61	-1.0
5,444,094	-		PFLU_RS24315	0.61	-1.3
5,444,094	-		PFLU_RS24315	0.61	-0.1
5,444,094	-		PFLU_RS24315	0.61	-0.1
5,444,094	-		PFLU_RS24315	0.61	-0.1
5,444,094	-		PFLU_RS24315	0.61	-4.0
5,444,168	+		PFLU_RS24315	0.66	-1.9
5,444,168	+		PFLU_RS24315	0.66	-0.6
5,444,169	-		PFLU_RS24315	0.66	-1.1
5,444,169	-		PFLU_RS24315	0.66	-1.3
5,444,220	+		PFLU_RS24315	0.70	-3.4
5,444,220	+		PFLU_RS24315	0.70	-1.7
5,444,220	+		PFLU_RS24315	0.70	-1.4
5,444,221	-		PFLU_RS24315	0.70	-2.0
5,444,221	-		PFLU_RS24315	0.70	-0.5
5,444,319	+		PFLU_RS24315	0.77	+0.1
5,444,320	-		PFLU_RS24315	0.77	-0.9
5,444,450	+		PFLU_RS24315	0.86	-3.8
5,444,450	+		PFLU_RS24315	0.86	+0.1
5,444,450	+		PFLU_RS24315	0.86	-0.3
5,444,451	-		PFLU_RS24315	0.86	-1.9
5,444,451	-		PFLU_RS24315	0.86	-1.8
5,444,451	-		PFLU_RS24315	0.86	+1.2
5,444,867	+		PFLU_RS24320	0.29	+0.4
5,444,944	+		PFLU_RS24320	0.40	-1.1
5,444,944	+		PFLU_RS24320	0.40	+0.5
5,444,944	+		PFLU_RS24320	0.40	+0.5
5,444,945	-		PFLU_RS24320	0.40	-1.3
5,445,072	+		PFLU_RS24320	0.57	-1.1
5,445,072	+		PFLU_RS24320	0.57	-0.2
5,445,072	+		PFLU_RS24320	0.57	-1.3
5,445,072	+		PFLU_RS24320	0.57	+0.5
5,445,072	+		PFLU_RS24320	0.57	-2.4
5,445,073	-		PFLU_RS24320	0.57	-0.3
5,445,073	-		PFLU_RS24320	0.57	-1.1
5,445,073	-		PFLU_RS24320	0.57	-1.8
5,445,073	-		PFLU_RS24320	0.57	-2.6
5,445,073	-		PFLU_RS24320	0.57	-0.7
5,445,073	-		PFLU_RS24320	0.57	+1.9
5,445,315	+				-0.4
5,445,315	+				-3.0
5,445,315	+				-0.5
5,445,315	+				-0.6
5,445,315	+				-2.1
5,445,315	+				-1.5
5,445,315	+				+0.7
5,445,315	+				-1.8
5,445,315	+				-2.8
5,445,315	+				-1.5
5,445,315	+				-0.9
5,445,316	-				-1.6
5,445,316	-				-0.1
5,445,316	-				-2.6
5,445,316	-				-0.1
5,445,316	-				-0.7
5,445,316	-				-2.1
5,445,316	-				+0.1
5,445,316	-				-0.1
5,445,316	-				-1.3
5,445,316	-				+0.1
5,445,316	-				-1.2
5,445,370	+				-1.6
5,445,371	-				+0.0
5,445,377	+				-0.8
5,445,377	+				-0.9
5,445,377	+				+2.7
5,445,378	-				+1.2
5,445,378	-				-1.1
5,445,403	+				-1.9
5,445,404	-				-3.6
5,445,412	+				-0.1
5,445,412	+				-0.5
5,445,412	+				+0.6
5,445,412	+				+0.4
5,445,412	+				+0.0
5,445,412	+				-1.2
5,445,412	+				-1.1
5,445,412	+				-1.9
5,445,412	+				-0.9
5,445,412	+				-0.1
5,445,412	+				+0.9
5,445,412	+				-0.7
5,445,413	-				-0.6
5,445,413	-				+0.3
5,445,413	-				+2.7
5,445,413	-				+2.0
5,445,413	-				+2.4
5,445,413	-				+1.8
5,445,413	-				+2.9
5,445,413	-				+4.5
5,445,459	+				+2.3
5,445,459	+				+0.7
5,445,459	+				+0.6
5,445,459	+				-1.1
5,445,459	+				-0.5
5,445,459	+				+2.4
5,445,459	+				-0.6
5,445,459	+				+0.2
5,445,459	+				-0.5
5,445,459	+				+0.4
5,445,460	-				+0.1
5,445,460	-				+2.6
5,445,460	-				+0.2
5,445,460	-				+0.4
5,445,460	-				+0.9
5,445,460	-				+0.8
5,445,460	-				+1.0
5,445,460	-				+1.3
5,445,515	-				+2.0
5,445,515	-				-0.5
5,445,563	-				-0.8
5,445,601	+				+0.9
5,445,601	+				-0.3
5,445,601	+				+2.7
5,445,602	-				-0.8
5,445,602	-				+0.7