Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22575

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
5,082,080	+		PFLU_RS22570	0.20	-0.1
5,082,092	+		PFLU_RS22570	0.21	-1.7
5,082,092	+		PFLU_RS22570	0.21	-2.3
5,082,092	+		PFLU_RS22570	0.21	-2.1
5,082,092	+		PFLU_RS22570	0.21	-0.6
5,082,092	+		PFLU_RS22570	0.21	-1.4
5,082,092	+		PFLU_RS22570	0.21	-1.2
5,082,092	+		PFLU_RS22570	0.21	-1.9
5,082,092	+		PFLU_RS22570	0.21	-0.2
5,082,092	+		PFLU_RS22570	0.21	+2.1
5,082,092	+		PFLU_RS22570	0.21	-1.6
5,082,092	+		PFLU_RS22570	0.21	-0.8
5,082,093	-		PFLU_RS22570	0.21	-1.4
5,082,093	-		PFLU_RS22570	0.21	-1.6
5,082,093	-		PFLU_RS22570	0.21	-0.5
5,082,093	-		PFLU_RS22570	0.21	-2.9
5,082,093	-		PFLU_RS22570	0.21	-2.1
5,082,093	-		PFLU_RS22570	0.21	-0.5
5,082,093	-		PFLU_RS22570	0.21	-1.9
5,082,093	-		PFLU_RS22570	0.21	-0.9
5,082,141	+		PFLU_RS22570	0.25	-1.5
5,082,142	-		PFLU_RS22570	0.25	-1.5
5,082,142	-		PFLU_RS22570	0.25	-3.1
5,082,142	-		PFLU_RS22570	0.25	-0.4
5,082,305	+		PFLU_RS22570	0.39	-0.0
5,082,305	+		PFLU_RS22570	0.39	-3.1
5,082,305	+		PFLU_RS22570	0.39	-0.2
5,082,305	+		PFLU_RS22570	0.39	+0.1
5,082,306	-		PFLU_RS22570	0.39	-2.3
5,082,306	-		PFLU_RS22570	0.39	-1.9
5,082,306	-		PFLU_RS22570	0.39	+0.1
5,082,306	-		PFLU_RS22570	0.39	-3.7
5,082,306	-		PFLU_RS22570	0.39	-3.9
5,082,306	-		PFLU_RS22570	0.39	-1.7
5,082,306	-		PFLU_RS22570	0.39	-0.8
5,082,308	+		PFLU_RS22570	0.39	-1.3
5,082,308	+		PFLU_RS22570	0.39	-3.3
5,082,308	+		PFLU_RS22570	0.39	-0.5
5,082,308	+		PFLU_RS22570	0.39	+1.1
5,082,339	+		PFLU_RS22570	0.41	-1.2
5,082,339	+		PFLU_RS22570	0.41	-0.6
5,082,339	+		PFLU_RS22570	0.41	+0.7
5,082,340	-		PFLU_RS22570	0.41	-2.3
5,082,340	-		PFLU_RS22570	0.41	-2.3
5,082,466	+		PFLU_RS22570	0.52	-2.3
5,082,466	+		PFLU_RS22570	0.52	-0.7
5,082,466	+		PFLU_RS22570	0.52	-0.0
5,082,466	+		PFLU_RS22570	0.52	-0.2
5,082,467	-		PFLU_RS22570	0.52	-2.6
5,082,467	-		PFLU_RS22570	0.52	-0.8
5,082,545	+		PFLU_RS22570	0.58	+0.3
5,082,546	-		PFLU_RS22570	0.58	-0.5
5,082,565	-		PFLU_RS22570	0.60	-1.7
5,082,656	+		PFLU_RS22570	0.67	+0.3
5,082,704	+		PFLU_RS22570	0.71	-1.2
5,082,704	+		PFLU_RS22570	0.71	-0.6
5,082,704	+		PFLU_RS22570	0.71	-0.3
5,082,704	+		PFLU_RS22570	0.71	+2.4
5,082,704	+		PFLU_RS22570	0.71	-0.2
5,082,782	+		PFLU_RS22570	0.78	+0.5
5,082,782	+		PFLU_RS22570	0.78	-1.4
5,082,782	+		PFLU_RS22570	0.78	+1.0
5,082,782	+		PFLU_RS22570	0.78	+1.4
5,082,782	+		PFLU_RS22570	0.78	+1.0
5,082,783	-		PFLU_RS22570	0.78	-0.7
5,082,851	+		PFLU_RS22570	0.83	+1.3
5,082,851	+		PFLU_RS22570	0.83	+0.4
5,082,851	+		PFLU_RS22570	0.83	-2.3
5,082,852	-		PFLU_RS22570	0.83	-1.9
5,082,852	-		PFLU_RS22570	0.83	-1.0
5,082,995	+				-0.2
5,082,995	+				+1.3
5,082,995	+				-0.1
5,082,995	+				+0.9
5,082,996	-				-1.7
5,082,996	-				-2.2
5,083,088	-				+0.5
5,083,088	-				-0.2
5,083,088	-				-2.7
5,083,308	-		PFLU_RS22575	0.41	-2.7
5,083,365	+		PFLU_RS22575	0.51	-0.6
5,083,365	+		PFLU_RS22575	0.51	-0.1
5,083,365	+		PFLU_RS22575	0.51	-0.2
5,083,365	+		PFLU_RS22575	0.51	-0.5
5,083,365	+		PFLU_RS22575	0.51	-1.1
5,083,365	+		PFLU_RS22575	0.51	-1.1
5,083,366	-		PFLU_RS22575	0.51	-2.9
5,083,366	-		PFLU_RS22575	0.51	-1.5
5,083,379	+		PFLU_RS22575	0.53	-0.1
5,083,379	+		PFLU_RS22575	0.53	-0.3
5,083,380	-		PFLU_RS22575	0.54	-1.9
5,083,554	+		PFLU_RS22575	0.84	-0.8
5,083,554	+		PFLU_RS22575	0.84	+0.2
5,083,554	+		PFLU_RS22575	0.84	-1.3
5,083,554	+		PFLU_RS22575	0.84	-2.9
5,083,555	-		PFLU_RS22575	0.84	+0.3
5,083,555	-		PFLU_RS22575	0.84	-1.6
5,083,555	-		PFLU_RS22575	0.84	+0.1
5,083,555	-		PFLU_RS22575	0.84	-1.9
5,083,555	-		PFLU_RS22575	0.84	-1.9
5,083,555	-		PFLU_RS22575	0.84	+0.5
5,083,555	-		PFLU_RS22575	0.84	-1.5
5,083,555	-		PFLU_RS22575	0.84	-3.1
5,083,555	-		PFLU_RS22575	0.84	-0.2
5,083,606	+				-1.4
5,083,664	+				+0.2
5,083,664	+				-0.4
5,083,665	-				-1.1
5,083,665	-				-1.7
5,083,665	-				-1.1
5,083,665	-				+0.7
5,083,665	-				-1.7
5,083,668	+				-0.2
5,083,668	+				+2.4
5,083,668	+				+1.8
5,083,668	+				+0.7
5,083,669	-				+0.7
5,083,669	-				-0.3
5,083,669	-				-0.4
5,083,669	-				-1.2
5,083,681	+				-1.5
5,083,682	-				-1.9
5,083,682	-				+0.5
5,083,827	+				-0.7
5,083,827	+				-3.2
5,083,827	+				+0.4
5,083,827	+				+1.1
5,083,827	+				+0.2
5,083,827	+				+0.5
5,083,827	+				+0.4
5,083,828	-				-0.6
5,083,828	-				-1.1
5,083,828	-				+0.5
5,083,828	-				-0.1
5,083,828	-				+0.6
5,083,828	-				+0.1
5,083,828	-				-0.2
5,083,828	-				-0.6
5,083,828	-				-1.3
5,083,828	-				-2.4
5,083,828	-				-0.1
5,083,828	-				+0.2
5,083,828	-				-1.1
5,083,828	-				-1.6
5,083,828	-				+0.8
5,083,913	+				-3.7
5,083,914	-				-2.3
5,083,914	-				-1.2
5,083,914	-				+0.5
5,083,940	+				-2.5
5,083,941	-				-2.7
5,083,941	-				-1.9
5,083,941	-				-0.5
5,084,112	+		PFLU_RS22580	0.21	-2.2
5,084,112	+		PFLU_RS22580	0.21	-2.1
5,084,112	+		PFLU_RS22580	0.21	-0.3
5,084,113	-		PFLU_RS22580	0.21	-0.4
5,084,113	-		PFLU_RS22580	0.21	-1.2
5,084,113	-		PFLU_RS22580	0.21	-1.3
5,084,113	-		PFLU_RS22580	0.21	-1.1
5,084,113	-		PFLU_RS22580	0.21	-2.6
5,084,159	+		PFLU_RS22580	0.25	-2.2
5,084,159	+		PFLU_RS22580	0.25	-2.7
5,084,160	-		PFLU_RS22580	0.25	+0.6
5,084,160	-		PFLU_RS22580	0.25	-2.3
5,084,160	-		PFLU_RS22580	0.25	-1.8
5,084,290	+		PFLU_RS22580	0.36	-2.3
5,084,290	+		PFLU_RS22580	0.36	+1.2
5,084,291	-		PFLU_RS22580	0.36	-1.6
5,084,459	+		PFLU_RS22580	0.50	-3.5
5,084,459	+		PFLU_RS22580	0.50	-0.1
5,084,460	-		PFLU_RS22580	0.50	-3.1
5,084,460	-		PFLU_RS22580	0.50	-1.1
5,084,460	-		PFLU_RS22580	0.50	-1.7
5,084,460	-		PFLU_RS22580	0.50	-2.7
5,084,460	-		PFLU_RS22580	0.50	+0.4
5,084,508	-		PFLU_RS22580	0.54	-2.4
5,084,508	-		PFLU_RS22580	0.54	+0.9
5,084,558	+		PFLU_RS22580	0.58	-0.4
5,084,573	+		PFLU_RS22580	0.59	-2.6
5,084,573	+		PFLU_RS22580	0.59	-1.8
5,084,574	-		PFLU_RS22580	0.59	-0.4
5,084,600	+		PFLU_RS22580	0.61	-1.1
5,084,601	-		PFLU_RS22580	0.61	-0.7
5,084,603	+		PFLU_RS22580	0.62	-2.1
5,084,603	+		PFLU_RS22580	0.62	-0.3
5,084,603	+		PFLU_RS22580	0.62	-1.2
5,084,603	+		PFLU_RS22580	0.62	-1.3
5,084,603	+		PFLU_RS22580	0.62	-2.1
5,084,603	+		PFLU_RS22580	0.62	-2.7
5,084,603	+		PFLU_RS22580	0.62	+0.4
5,084,604	-		PFLU_RS22580	0.62	-3.6
5,084,604	-		PFLU_RS22580	0.62	-2.7
5,084,604	-		PFLU_RS22580	0.62	-2.8
5,084,604	-		PFLU_RS22580	0.62	-2.6
5,084,604	-		PFLU_RS22580	0.62	-1.3
5,084,604	-		PFLU_RS22580	0.62	-1.2
5,084,604	-		PFLU_RS22580	0.62	-1.1