Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15470

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
3,464,993	+		PFLU_RS15460	0.83	+1.0
3,464,994	-		PFLU_RS15460	0.83	-0.2
3,465,040	+		PFLU_RS15460	0.87	+1.0
3,465,040	+		PFLU_RS15460	0.87	+0.2
3,465,040	+		PFLU_RS15460	0.87	+0.8
3,465,040	+		PFLU_RS15460	0.87	-0.1
3,465,041	-		PFLU_RS15460	0.87	-0.8
3,465,041	-		PFLU_RS15460	0.87	-1.7
3,465,043	+		PFLU_RS15460	0.87	+0.6
3,465,043	+		PFLU_RS15460	0.87	+0.8
3,465,043	+		PFLU_RS15460	0.87	+1.3
3,465,043	+		PFLU_RS15460	0.87	+1.2
3,465,043	+		PFLU_RS15460	0.87	-0.6
3,465,043	+		PFLU_RS15460	0.87	+0.8
3,465,044	-		PFLU_RS15460	0.87	-0.6
3,465,083	-				-0.4
3,465,114	-				-0.0
3,465,114	-				+0.3
3,465,114	-				+0.8
3,465,156	+				-2.7
3,465,156	+				-1.6
3,465,156	+				+1.0
3,465,156	+				-1.0
3,465,156	+				-0.7
3,465,156	+				-0.1
3,465,156	+				-1.0
3,465,156	+				-0.6
3,465,156	+				+1.5
3,465,156	+				-0.8
3,465,156	+				+0.5
3,465,156	+				+0.4
3,465,156	+				+0.2
3,465,156	+				-2.4
3,465,156	+				+0.8
3,465,156	+				+0.3
3,465,156	+				+0.8
3,465,156	+				-1.1
3,465,156	+				-0.0
3,465,157	-				-0.5
3,465,157	-				-2.4
3,465,157	-				-0.2
3,465,157	-				-0.7
3,465,157	-				+0.8
3,465,157	-				-1.6
3,465,157	-				+0.2
3,465,157	-				+0.5
3,465,157	-				+0.8
3,465,157	-				+0.3
3,465,157	-				-0.5
3,465,157	-				-0.0
3,465,157	-				-0.4
3,465,157	-				-2.2
3,465,165	-				-0.5
3,465,165	-				-1.6
3,465,188	+				-0.0
3,465,188	+				+1.9
3,465,188	+				-0.6
3,465,188	+				-0.1
3,465,188	+				+0.1
3,465,188	+				+1.3
3,465,188	+				-1.8
3,465,188	+				-0.2
3,465,188	+				+0.8
3,465,188	+				-0.4
3,465,188	+				+0.0
3,465,188	+				-0.8
3,465,188	+				+1.2
3,465,188	+				-0.0
3,465,189	-				-0.1
3,465,189	-				-0.4
3,465,189	-				+0.8
3,465,189	-				-1.8
3,465,189	-				-1.8
3,465,189	-				+1.2
3,465,189	-				+0.4
3,465,189	-				+2.5
3,465,189	-				-1.7
3,465,189	-				-0.2
3,465,234	+				+0.0
3,465,235	-				+1.2
3,465,238	+				+1.0
3,465,238	+				-1.6
3,465,239	-				+0.3
3,465,239	-				-1.2
3,465,334	+		PFLU_RS15465	0.17	+0.1
3,465,335	-		PFLU_RS15465	0.17	-0.4
3,465,404	+		PFLU_RS15465	0.29	-0.7
3,465,404	+		PFLU_RS15465	0.29	+0.4
3,465,405	-		PFLU_RS15465	0.29	+2.0
3,465,405	-		PFLU_RS15465	0.29	-3.3
3,465,405	-		PFLU_RS15465	0.29	+1.0
3,465,493	-		PFLU_RS15465	0.44	-1.2
3,465,559	+		PFLU_RS15465	0.55	+1.6
3,465,560	-		PFLU_RS15465	0.55	+0.7
3,465,560	-		PFLU_RS15465	0.55	+1.8
3,465,560	-		PFLU_RS15465	0.55	+0.6
3,465,560	-		PFLU_RS15465	0.55	+0.3
3,465,560	-		PFLU_RS15465	0.55	-0.6
3,465,635	-		PFLU_RS15465	0.68	-1.2
3,465,679	+		PFLU_RS15465	0.76	-0.8
3,465,680	-		PFLU_RS15465	0.76	+0.9
3,465,680	-		PFLU_RS15465	0.76	-0.1
3,465,685	+		PFLU_RS15465	0.77	+0.8
3,465,686	-		PFLU_RS15465	0.77	-1.8
3,465,698	+		PFLU_RS15465	0.79	+1.5
3,465,698	+		PFLU_RS15465	0.79	-0.0
3,465,729	+		PFLU_RS15465	0.85	+1.1
3,465,729	+		PFLU_RS15465	0.85	-0.7
3,465,730	-		PFLU_RS15465	0.85	+0.9
3,465,818	+				-0.1
3,465,883	+				+0.9
3,465,884	-				-0.2
3,465,917	+				+0.9
3,466,012	+		PFLU_RS15470	0.26	-0.7
3,466,012	+		PFLU_RS15470	0.26	+0.8
3,466,013	-		PFLU_RS15470	0.26	+0.5
3,466,013	-		PFLU_RS15470	0.26	-2.0
3,466,013	-		PFLU_RS15470	0.26	+0.0
3,466,165	-		PFLU_RS15470	0.71	-0.4
3,466,181	+		PFLU_RS15470	0.76	+1.8
3,466,219	+		PFLU_RS15470	0.88	-0.4
3,466,272	+				-0.1
3,466,272	+				-0.0
3,466,272	+				-1.6
3,466,272	+				-1.0
3,466,272	+				+1.8
3,466,273	-				+2.9
3,466,273	-				+0.4
3,466,303	+				+0.4
3,466,303	+				-0.3
3,466,303	+				+2.8
3,466,303	+				-3.2
3,466,303	+				+2.3
3,466,303	+				-0.6
3,466,304	-				+0.9
3,466,304	-				-1.2
3,466,538	+		PFLU_RS15475	0.27	-1.4
3,466,538	+		PFLU_RS15475	0.27	-0.8
3,466,539	-		PFLU_RS15475	0.27	-0.8
3,466,586	+		PFLU_RS15475	0.34	-2.7
3,466,586	+		PFLU_RS15475	0.34	-2.2
3,466,586	+		PFLU_RS15475	0.34	-0.3
3,466,586	+		PFLU_RS15475	0.34	+0.8
3,466,587	-		PFLU_RS15475	0.34	+0.9
3,466,587	-		PFLU_RS15475	0.34	-1.6
3,466,587	-		PFLU_RS15475	0.34	-0.5
3,466,589	+		PFLU_RS15475	0.35	-1.9
3,466,589	+		PFLU_RS15475	0.35	-0.5
3,466,589	+		PFLU_RS15475	0.35	+0.1
3,466,589	+		PFLU_RS15475	0.35	+0.3
3,466,590	-		PFLU_RS15475	0.35	+1.4
3,466,644	+		PFLU_RS15475	0.43	+2.3
3,466,644	+		PFLU_RS15475	0.43	+1.3
3,466,644	+		PFLU_RS15475	0.43	-0.6
3,466,644	+		PFLU_RS15475	0.43	+1.1
3,466,644	+		PFLU_RS15475	0.43	-0.6
3,466,644	+		PFLU_RS15475	0.43	+0.3
3,466,644	+		PFLU_RS15475	0.43	-1.7
3,466,644	+		PFLU_RS15475	0.43	-2.8
3,466,644	+		PFLU_RS15475	0.43	-0.8
3,466,644	+		PFLU_RS15475	0.43	+2.9
3,466,645	-		PFLU_RS15475	0.43	+0.1
3,466,645	-		PFLU_RS15475	0.43	-1.8
3,466,645	-		PFLU_RS15475	0.43	-0.8
3,466,645	-		PFLU_RS15475	0.43	+1.5
3,466,645	-		PFLU_RS15475	0.43	+0.2
3,466,645	-		PFLU_RS15475	0.43	+0.0
3,466,645	-		PFLU_RS15475	0.43	-0.7
3,466,645	-		PFLU_RS15475	0.43	+1.8
3,466,645	-		PFLU_RS15475	0.43	-0.6
3,466,717	+		PFLU_RS15475	0.55	-0.4
3,466,718	-		PFLU_RS15475	0.55	-1.1
3,466,718	-		PFLU_RS15475	0.55	+1.5
3,466,718	-		PFLU_RS15475	0.55	+0.5
3,466,718	-		PFLU_RS15475	0.55	-2.6
3,466,718	-		PFLU_RS15475	0.55	-0.0
3,466,718	-		PFLU_RS15475	0.55	-0.2
3,466,718	-		PFLU_RS15475	0.55	-0.2
3,466,718	-		PFLU_RS15475	0.55	+0.8
3,466,805	+		PFLU_RS15475	0.69	+0.3
3,466,805	+		PFLU_RS15475	0.69	+2.8
3,466,805	+		PFLU_RS15475	0.69	+0.1
3,466,805	+		PFLU_RS15475	0.69	-0.0
3,466,806	-		PFLU_RS15475	0.69	-1.8
3,466,806	-		PFLU_RS15475	0.69	-1.4
3,466,809	+		PFLU_RS15475	0.69	-0.2
3,466,809	+		PFLU_RS15475	0.69	-1.2
3,466,809	+		PFLU_RS15475	0.69	-0.7
3,466,809	+		PFLU_RS15475	0.69	-0.2
3,466,809	+		PFLU_RS15475	0.69	-0.2
3,466,810	-		PFLU_RS15475	0.70	-0.1
3,466,810	-		PFLU_RS15475	0.70	+1.2
3,466,810	-		PFLU_RS15475	0.70	-1.9
3,466,810	-		PFLU_RS15475	0.70	+1.8
3,466,810	-		PFLU_RS15475	0.70	-0.8
3,466,810	-		PFLU_RS15475	0.70	+2.4
3,466,891	+		PFLU_RS15475	0.82	-2.2
3,466,891	+		PFLU_RS15475	0.82	+1.0
3,466,891	+		PFLU_RS15475	0.82	+0.5
3,466,891	+		PFLU_RS15475	0.82	+1.2
3,466,891	+		PFLU_RS15475	0.82	-1.2
3,466,891	+		PFLU_RS15475	0.82	+1.1
3,466,891	+		PFLU_RS15475	0.82	+2.6
3,466,891	+		PFLU_RS15475	0.82	+1.6
3,466,891	+		PFLU_RS15475	0.82	+0.8
3,466,891	+		PFLU_RS15475	0.82	+1.0
3,466,891	+		PFLU_RS15475	0.82	+4.1
3,466,891	+		PFLU_RS15475	0.82	+0.0
3,466,891	+		PFLU_RS15475	0.82	-0.2
3,466,891	+		PFLU_RS15475	0.82	+0.8
3,466,891	+		PFLU_RS15475	0.82	+1.8
3,466,892	-		PFLU_RS15475	0.82	-2.0
3,466,892	-		PFLU_RS15475	0.82	+0.8
3,466,892	-		PFLU_RS15475	0.82	+0.3
3,466,892	-		PFLU_RS15475	0.82	-1.8
3,466,892	-		PFLU_RS15475	0.82	-1.6
3,466,892	-		PFLU_RS15475	0.82	-0.5
3,466,892	-		PFLU_RS15475	0.82	+1.3
3,466,892	-		PFLU_RS15475	0.82	+2.2
3,466,892	-		PFLU_RS15475	0.82	-1.4
3,466,892	-		PFLU_RS15475	0.82	+0.8
3,466,892	-		PFLU_RS15475	0.82	-2.6
3,466,892	-		PFLU_RS15475	0.82	-0.8
3,466,892	-		PFLU_RS15475	0.82	+0.3
3,466,892	-		PFLU_RS15475	0.82	+1.5
3,467,050	+				+1.8
3,467,050	+				+0.4
3,467,051	-				-0.6
3,467,121	+				+1.4
3,467,122	-				+0.3
3,467,150	+				+0.4
3,467,151	-				+0.5
3,467,182	-		PFLU_RS15480	0.12	-0.1
3,467,203	+		PFLU_RS15480	0.14	-0.1
3,467,204	-		PFLU_RS15480	0.14	-1.6
3,467,204	-		PFLU_RS15480	0.14	+1.2
3,467,239	-		PFLU_RS15480	0.17	+0.5