Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03780 and PFLU_RS03785 are separated by 79 nucleotides PFLU_RS03785 and PFLU_RS03790 overlap by 2 nucleotides PFLU_RS03790 and PFLU_RS03795 are separated by 360 nucleotides
PFLU_RS03780: PFLU_RS03780 - phosphate acetyltransferase, at 863,711 to 865,810
_RS03780
PFLU_RS03785: PFLU_RS03785 - DUF3565 domain-containing protein, at 865,890 to 866,180
_RS03785
PFLU_RS03790: PFLU_RS03790 - peptidylprolyl isomerase, at 866,179 to 866,664
_RS03790
PFLU_RS03795: PFLU_RS03795 - 30S ribosomal protein S20, at 867,025 to 867,303
_RS03795
Position (kb) 865
866
867 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 864.950 kb on + strand, within PFLU_RS03780 at 864.951 kb on - strand, within PFLU_RS03780 at 865.049 kb on + strand, within PFLU_RS03780 at 865.063 kb on + strand, within PFLU_RS03780 at 865.117 kb on - strand, within PFLU_RS03780 at 865.300 kb on + strand, within PFLU_RS03780 at 865.300 kb on + strand, within PFLU_RS03780 at 865.300 kb on + strand, within PFLU_RS03780 at 865.300 kb on + strand, within PFLU_RS03780 at 865.301 kb on - strand, within PFLU_RS03780 at 865.301 kb on - strand, within PFLU_RS03780 at 865.301 kb on - strand, within PFLU_RS03780 at 865.316 kb on + strand, within PFLU_RS03780 at 865.317 kb on - strand, within PFLU_RS03780 at 865.464 kb on + strand, within PFLU_RS03780 at 865.464 kb on + strand, within PFLU_RS03780 at 865.464 kb on + strand, within PFLU_RS03780 at 865.465 kb on - strand, within PFLU_RS03780 at 865.465 kb on - strand, within PFLU_RS03780 at 865.465 kb on - strand, within PFLU_RS03780 at 865.533 kb on + strand, within PFLU_RS03780 at 865.533 kb on + strand, within PFLU_RS03780 at 865.533 kb on + strand, within PFLU_RS03780 at 865.534 kb on - strand, within PFLU_RS03780 at 865.592 kb on + strand, within PFLU_RS03780 at 865.592 kb on + strand, within PFLU_RS03780 at 865.592 kb on + strand, within PFLU_RS03780 at 865.593 kb on - strand, within PFLU_RS03780 at 865.593 kb on - strand, within PFLU_RS03780 at 865.593 kb on - strand, within PFLU_RS03780 at 865.593 kb on - strand, within PFLU_RS03780 at 865.593 kb on - strand, within PFLU_RS03780 at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.848 kb on + strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.849 kb on - strand at 865.862 kb on + strand at 865.862 kb on + strand at 865.862 kb on + strand at 865.863 kb on - strand at 865.863 kb on - strand at 865.863 kb on - strand at 866.001 kb on + strand, within PFLU_RS03785 at 866.001 kb on + strand, within PFLU_RS03785 at 866.001 kb on + strand, within PFLU_RS03785 at 866.001 kb on + strand, within PFLU_RS03785 at 866.001 kb on + strand, within PFLU_RS03785 at 866.002 kb on - strand, within PFLU_RS03785 at 866.002 kb on - strand, within PFLU_RS03785 at 866.002 kb on - strand, within PFLU_RS03785 at 866.002 kb on - strand, within PFLU_RS03785 at 866.136 kb on + strand, within PFLU_RS03785 at 866.136 kb on + strand, within PFLU_RS03785 at 866.136 kb on + strand, within PFLU_RS03785 at 866.137 kb on - strand, within PFLU_RS03785 at 866.159 kb on + strand at 866.160 kb on - strand at 866.160 kb on - strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.215 kb on + strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.216 kb on - strand at 866.217 kb on + strand at 866.217 kb on + strand at 866.217 kb on + strand at 866.217 kb on + strand at 866.218 kb on - strand at 866.218 kb on - strand at 866.218 kb on - strand at 866.218 kb on - strand at 866.295 kb on + strand, within PFLU_RS03790 at 866.295 kb on + strand, within PFLU_RS03790 at 866.295 kb on + strand, within PFLU_RS03790 at 866.295 kb on + strand, within PFLU_RS03790 at 866.295 kb on + strand, within PFLU_RS03790 at 866.295 kb on + strand, within PFLU_RS03790 at 866.296 kb on - strand, within PFLU_RS03790 at 866.363 kb on + strand, within PFLU_RS03790 at 866.363 kb on + strand, within PFLU_RS03790 at 866.364 kb on - strand, within PFLU_RS03790 at 866.380 kb on + strand, within PFLU_RS03790 at 866.380 kb on + strand, within PFLU_RS03790 at 866.380 kb on + strand, within PFLU_RS03790 at 866.381 kb on - strand, within PFLU_RS03790 at 866.389 kb on + strand, within PFLU_RS03790 at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.680 kb on + strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.681 kb on - strand at 866.685 kb on - strand at 866.685 kb on - strand at 866.685 kb on - strand at 866.685 kb on - strand at 866.685 kb on - strand at 866.685 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.857 kb on - strand at 866.932 kb on - strand at 867.020 kb on - strand at 867.020 kb on - strand at 867.027 kb on - strand at 867.027 kb on - strand at 867.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 864,950 + PFLU_RS03780 0.59 -0.6 864,951 - PFLU_RS03780 0.59 -2.6 865,049 + PFLU_RS03780 0.64 -0.0 865,063 + PFLU_RS03780 0.64 +0.7 865,117 - PFLU_RS03780 0.67 -1.4 865,300 + PFLU_RS03780 0.76 +1.5 865,300 + PFLU_RS03780 0.76 -0.1 865,300 + PFLU_RS03780 0.76 +0.1 865,300 + PFLU_RS03780 0.76 -0.5 865,301 - PFLU_RS03780 0.76 +0.5 865,301 - PFLU_RS03780 0.76 +1.5 865,301 - PFLU_RS03780 0.76 -1.4 865,316 + PFLU_RS03780 0.76 +2.1 865,317 - PFLU_RS03780 0.76 +0.9 865,464 + PFLU_RS03780 0.83 +0.2 865,464 + PFLU_RS03780 0.83 +0.6 865,464 + PFLU_RS03780 0.83 -0.1 865,465 - PFLU_RS03780 0.84 +0.4 865,465 - PFLU_RS03780 0.84 +0.5 865,465 - PFLU_RS03780 0.84 +1.7 865,533 + PFLU_RS03780 0.87 +1.7 865,533 + PFLU_RS03780 0.87 +1.5 865,533 + PFLU_RS03780 0.87 +0.3 865,534 - PFLU_RS03780 0.87 -0.5 865,592 + PFLU_RS03780 0.90 +0.8 865,592 + PFLU_RS03780 0.90 -0.5 865,592 + PFLU_RS03780 0.90 -0.5 865,593 - PFLU_RS03780 0.90 +1.0 865,593 - PFLU_RS03780 0.90 +0.0 865,593 - PFLU_RS03780 0.90 +0.5 865,593 - PFLU_RS03780 0.90 +1.3 865,593 - PFLU_RS03780 0.90 -1.3 865,848 + +1.5 865,848 + +0.4 865,848 + -2.3 865,848 + +1.8 865,848 + -0.6 865,848 + +0.9 865,848 + -0.7 865,848 + +0.7 865,848 + +1.6 865,848 + -1.2 865,848 + +1.6 865,848 + -0.9 865,848 + +0.3 865,848 + +0.1 865,848 + -0.5 865,848 + +2.0 865,848 + -2.3 865,848 + -1.4 865,848 + +0.5 865,848 + -2.3 865,848 + -1.1 865,849 - -3.3 865,849 - -0.5 865,849 - +0.4 865,849 - +0.3 865,849 - -1.5 865,849 - +0.6 865,849 - -2.9 865,849 - +1.8 865,849 - -1.9 865,849 - -0.3 865,849 - +0.0 865,849 - +1.8 865,849 - +0.6 865,849 - +0.8 865,849 - +1.5 865,849 - +0.7 865,849 - +0.4 865,849 - -1.3 865,849 - -0.2 865,849 - +0.8 865,862 + +0.2 865,862 + -0.1 865,862 + +3.4 865,863 - +1.5 865,863 - -1.2 865,863 - +0.4 866,001 + PFLU_RS03785 0.38 -1.2 866,001 + PFLU_RS03785 0.38 -0.3 866,001 + PFLU_RS03785 0.38 -0.0 866,001 + PFLU_RS03785 0.38 -1.6 866,001 + PFLU_RS03785 0.38 +0.0 866,002 - PFLU_RS03785 0.38 -1.4 866,002 - PFLU_RS03785 0.38 -0.5 866,002 - PFLU_RS03785 0.38 +2.2 866,002 - PFLU_RS03785 0.38 -2.3 866,136 + PFLU_RS03785 0.85 -1.3 866,136 + PFLU_RS03785 0.85 +1.9 866,136 + PFLU_RS03785 0.85 +0.8 866,137 - PFLU_RS03785 0.85 +0.1 866,159 + +0.0 866,160 - +0.0 866,160 - -1.9 866,215 + -0.7 866,215 + +1.6 866,215 + +0.4 866,215 + -1.3 866,215 + +1.1 866,215 + +0.8 866,215 + -1.2 866,215 + +0.8 866,215 + -2.1 866,215 + +0.2 866,215 + +1.7 866,216 - -0.6 866,216 - -1.0 866,216 - +1.2 866,216 - -0.7 866,216 - -0.2 866,216 - -1.3 866,216 - +0.0 866,216 - -0.4 866,217 + -0.3 866,217 + -1.2 866,217 + -1.3 866,217 + +0.7 866,218 - -0.2 866,218 - -0.0 866,218 - -0.2 866,218 - -1.1 866,295 + PFLU_RS03790 0.24 +1.8 866,295 + PFLU_RS03790 0.24 +1.1 866,295 + PFLU_RS03790 0.24 -0.5 866,295 + PFLU_RS03790 0.24 -0.6 866,295 + PFLU_RS03790 0.24 +0.8 866,295 + PFLU_RS03790 0.24 +1.6 866,296 - PFLU_RS03790 0.24 +2.7 866,363 + PFLU_RS03790 0.38 +0.6 866,363 + PFLU_RS03790 0.38 +0.3 866,364 - PFLU_RS03790 0.38 -0.2 866,380 + PFLU_RS03790 0.41 +0.8 866,380 + PFLU_RS03790 0.41 +0.1 866,380 + PFLU_RS03790 0.41 +0.3 866,381 - PFLU_RS03790 0.42 +1.1 866,389 + PFLU_RS03790 0.43 -3.1 866,680 + +1.5 866,680 + -0.5 866,680 + +0.9 866,680 + -0.7 866,680 + -1.5 866,680 + +0.2 866,680 + +0.1 866,680 + -0.2 866,680 + +0.7 866,680 + -2.9 866,680 + +0.4 866,680 + -0.2 866,681 - +0.4 866,681 - -1.0 866,681 - +0.4 866,681 - -0.9 866,681 - -0.2 866,681 - +1.1 866,681 - +0.6 866,681 - +0.5 866,681 - +1.2 866,681 - -1.0 866,685 - -0.3 866,685 - -0.9 866,685 - +1.4 866,685 - -0.6 866,685 - +1.5 866,685 - +0.5 866,857 - +2.0 866,857 - -0.2 866,857 - -0.9 866,857 - +0.6 866,857 - +0.5 866,857 - +2.0 866,857 - -1.9 866,857 - -0.8 866,932 - +1.3 867,020 - -0.4 867,020 - +0.8 867,027 - +0.7 867,027 - +2.4 867,027 - +0.7
Or see this region's nucleotide sequence