Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01755

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01745 and PFLU_RS01750 are separated by 176 nucleotidesPFLU_RS01750 and PFLU_RS01755 are separated by 30 nucleotidesPFLU_RS01755 and PFLU_RS01760 are separated by 129 nucleotides PFLU_RS01745: PFLU_RS01745 - class 1 fructose-bisphosphatase, at 392,475 to 393,485 _RS01745 PFLU_RS01750: PFLU_RS01750 - hypothetical protein, at 393,662 to 393,916 _RS01750 PFLU_RS01755: PFLU_RS01755 - lipocalin family protein, at 393,947 to 394,516 _RS01755 PFLU_RS01760: PFLU_RS01760 - formimidoylglutamate deiminase, at 394,646 to 396,010 _RS01760 Position (kb) 393 394 395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 393.483 kb on + strandat 393.483 kb on + strandat 393.483 kb on + strandat 393.483 kb on + strandat 393.484 kb on - strandat 393.484 kb on - strandat 393.484 kb on - strandat 393.484 kb on - strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.612 kb on + strandat 393.613 kb on - strandat 393.613 kb on - strandat 393.613 kb on - strandat 393.613 kb on - strandat 393.613 kb on - strandat 393.856 kb on + strand, within PFLU_RS01750at 393.856 kb on + strand, within PFLU_RS01750at 393.869 kb on + strand, within PFLU_RS01750at 393.869 kb on + strand, within PFLU_RS01750at 393.869 kb on + strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.870 kb on - strand, within PFLU_RS01750at 393.914 kb on + strandat 393.914 kb on + strandat 393.914 kb on + strandat 394.073 kb on + strand, within PFLU_RS01755at 394.073 kb on + strand, within PFLU_RS01755at 394.073 kb on + strand, within PFLU_RS01755at 394.074 kb on - strand, within PFLU_RS01755at 394.074 kb on - strand, within PFLU_RS01755at 394.074 kb on - strand, within PFLU_RS01755at 394.074 kb on - strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.097 kb on + strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.098 kb on - strand, within PFLU_RS01755at 394.133 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.156 kb on + strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.157 kb on - strand, within PFLU_RS01755at 394.267 kb on + strand, within PFLU_RS01755at 394.267 kb on + strand, within PFLU_RS01755at 394.268 kb on - strand, within PFLU_RS01755at 394.268 kb on - strand, within PFLU_RS01755at 394.268 kb on - strand, within PFLU_RS01755at 394.284 kb on + strand, within PFLU_RS01755at 394.285 kb on - strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.322 kb on + strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.323 kb on - strand, within PFLU_RS01755at 394.337 kb on + strand, within PFLU_RS01755at 394.337 kb on + strand, within PFLU_RS01755at 394.337 kb on + strand, within PFLU_RS01755at 394.337 kb on + strand, within PFLU_RS01755at 394.338 kb on - strand, within PFLU_RS01755at 394.338 kb on - strand, within PFLU_RS01755at 394.338 kb on - strand, within PFLU_RS01755at 394.338 kb on - strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.373 kb on + strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.374 kb on - strand, within PFLU_RS01755at 394.383 kb on + strand, within PFLU_RS01755at 394.454 kb on + strand, within PFLU_RS01755at 394.454 kb on + strand, within PFLU_RS01755at 394.455 kb on - strand, within PFLU_RS01755at 394.455 kb on - strand, within PFLU_RS01755at 394.514 kb on + strandat 394.514 kb on + strandat 394.515 kb on - strandat 394.596 kb on - strandat 394.596 kb on - strandat 394.596 kb on - strandat 394.821 kb on + strand, within PFLU_RS01760at 394.821 kb on + strand, within PFLU_RS01760at 394.822 kb on - strand, within PFLU_RS01760at 394.962 kb on + strand, within PFLU_RS01760at 394.963 kb on - strand, within PFLU_RS01760at 394.963 kb on - strand, within PFLU_RS01760at 394.963 kb on - strand, within PFLU_RS01760at 394.963 kb on - strand, within PFLU_RS01760at 395.001 kb on + strand, within PFLU_RS01760at 395.002 kb on - strand, within PFLU_RS01760at 395.002 kb on - strand, within PFLU_RS01760at 395.085 kb on + strand, within PFLU_RS01760at 395.085 kb on + strand, within PFLU_RS01760at 395.086 kb on - strand, within PFLU_RS01760at 395.241 kb on + strand, within PFLU_RS01760at 395.241 kb on + strand, within PFLU_RS01760at 395.242 kb on - strand, within PFLU_RS01760at 395.242 kb on - strand, within PFLU_RS01760at 395.242 kb on - strand, within PFLU_RS01760at 395.242 kb on - strand, within PFLU_RS01760at 395.242 kb on - strand, within PFLU_RS01760at 395.318 kb on - strand, within PFLU_RS01760at 395.318 kb on - strand, within PFLU_RS01760at 395.463 kb on + strand, within PFLU_RS01760at 395.463 kb on + strand, within PFLU_RS01760at 395.463 kb on + strand, within PFLU_RS01760at 395.463 kb on + strand, within PFLU_RS01760at 395.463 kb on + strand, within PFLU_RS01760at 395.464 kb on - strand, within PFLU_RS01760at 395.464 kb on - strand, within PFLU_RS01760at 395.464 kb on - strand, within PFLU_RS01760at 395.464 kb on - strand, within PFLU_RS01760at 395.482 kb on + strand, within PFLU_RS01760at 395.483 kb on - strand, within PFLU_RS01760at 395.483 kb on - strand, within PFLU_RS01760

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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393,483 + -0.7
393,483 + -0.3
393,483 + +0.1
393,483 + +1.2
393,484 - -1.5
393,484 - +1.7
393,484 - +0.1
393,484 - +0.1
393,612 + +0.6
393,612 + +1.6
393,612 + +1.1
393,612 + +1.5
393,612 + -1.3
393,612 + +1.1
393,612 + -1.1
393,612 + -0.4
393,612 + +1.6
393,612 + +0.2
393,613 - -0.2
393,613 - +1.1
393,613 - +0.3
393,613 - +0.1
393,613 - +0.2
393,856 + PFLU_RS01750 0.76 +2.5
393,856 + PFLU_RS01750 0.76 +0.6
393,869 + PFLU_RS01750 0.81 -0.2
393,869 + PFLU_RS01750 0.81 -0.4
393,869 + PFLU_RS01750 0.81 +0.5
393,870 - PFLU_RS01750 0.82 +0.1
393,870 - PFLU_RS01750 0.82 -2.3
393,870 - PFLU_RS01750 0.82 -1.1
393,870 - PFLU_RS01750 0.82 +0.8
393,870 - PFLU_RS01750 0.82 +0.1
393,870 - PFLU_RS01750 0.82 +1.4
393,914 + +0.0
393,914 + -0.8
393,914 + +1.0
394,073 + PFLU_RS01755 0.22 +2.1
394,073 + PFLU_RS01755 0.22 -2.1
394,073 + PFLU_RS01755 0.22 +0.8
394,074 - PFLU_RS01755 0.22 +1.6
394,074 - PFLU_RS01755 0.22 +1.2
394,074 - PFLU_RS01755 0.22 +0.9
394,074 - PFLU_RS01755 0.22 -1.9
394,097 + PFLU_RS01755 0.26 +0.8
394,097 + PFLU_RS01755 0.26 +0.3
394,097 + PFLU_RS01755 0.26 -1.1
394,097 + PFLU_RS01755 0.26 -0.5
394,097 + PFLU_RS01755 0.26 -0.7
394,097 + PFLU_RS01755 0.26 -1.2
394,098 - PFLU_RS01755 0.26 -0.2
394,098 - PFLU_RS01755 0.26 +2.4
394,098 - PFLU_RS01755 0.26 +0.6
394,098 - PFLU_RS01755 0.26 -1.6
394,098 - PFLU_RS01755 0.26 +0.2
394,098 - PFLU_RS01755 0.26 +0.1
394,133 + PFLU_RS01755 0.33 +1.6
394,156 + PFLU_RS01755 0.37 -0.5
394,156 + PFLU_RS01755 0.37 +0.1
394,156 + PFLU_RS01755 0.37 -0.1
394,156 + PFLU_RS01755 0.37 -0.8
394,156 + PFLU_RS01755 0.37 +0.2
394,156 + PFLU_RS01755 0.37 +0.2
394,156 + PFLU_RS01755 0.37 +0.5
394,156 + PFLU_RS01755 0.37 +0.2
394,157 - PFLU_RS01755 0.37 +0.5
394,157 - PFLU_RS01755 0.37 +1.9
394,157 - PFLU_RS01755 0.37 +2.1
394,157 - PFLU_RS01755 0.37 +0.3
394,157 - PFLU_RS01755 0.37 +0.0
394,157 - PFLU_RS01755 0.37 +1.1
394,157 - PFLU_RS01755 0.37 +0.5
394,157 - PFLU_RS01755 0.37 -1.4
394,267 + PFLU_RS01755 0.56 +1.1
394,267 + PFLU_RS01755 0.56 -2.1
394,268 - PFLU_RS01755 0.56 -0.5
394,268 - PFLU_RS01755 0.56 -1.3
394,268 - PFLU_RS01755 0.56 +0.9
394,284 + PFLU_RS01755 0.59 -2.9
394,285 - PFLU_RS01755 0.59 -0.6
394,322 + PFLU_RS01755 0.66 -0.9
394,322 + PFLU_RS01755 0.66 +1.4
394,322 + PFLU_RS01755 0.66 +0.1
394,322 + PFLU_RS01755 0.66 -1.1
394,322 + PFLU_RS01755 0.66 -0.7
394,322 + PFLU_RS01755 0.66 +0.5
394,322 + PFLU_RS01755 0.66 -1.2
394,322 + PFLU_RS01755 0.66 -0.2
394,322 + PFLU_RS01755 0.66 +0.1
394,323 - PFLU_RS01755 0.66 +0.5
394,323 - PFLU_RS01755 0.66 -2.1
394,323 - PFLU_RS01755 0.66 -1.6
394,323 - PFLU_RS01755 0.66 +1.7
394,323 - PFLU_RS01755 0.66 -1.5
394,323 - PFLU_RS01755 0.66 +1.5
394,323 - PFLU_RS01755 0.66 +0.2
394,337 + PFLU_RS01755 0.68 -1.5
394,337 + PFLU_RS01755 0.68 -1.3
394,337 + PFLU_RS01755 0.68 -2.9
394,337 + PFLU_RS01755 0.68 +0.3
394,338 - PFLU_RS01755 0.69 +0.1
394,338 - PFLU_RS01755 0.69 +1.5
394,338 - PFLU_RS01755 0.69 -1.7
394,338 - PFLU_RS01755 0.69 -0.7
394,373 + PFLU_RS01755 0.75 +0.1
394,373 + PFLU_RS01755 0.75 +0.9
394,373 + PFLU_RS01755 0.75 +1.0
394,373 + PFLU_RS01755 0.75 -0.2
394,373 + PFLU_RS01755 0.75 -1.2
394,373 + PFLU_RS01755 0.75 +0.0
394,373 + PFLU_RS01755 0.75 +0.1
394,374 - PFLU_RS01755 0.75 -1.1
394,374 - PFLU_RS01755 0.75 -0.4
394,374 - PFLU_RS01755 0.75 -0.2
394,374 - PFLU_RS01755 0.75 -1.9
394,374 - PFLU_RS01755 0.75 -1.6
394,374 - PFLU_RS01755 0.75 +0.6
394,374 - PFLU_RS01755 0.75 +1.0
394,374 - PFLU_RS01755 0.75 -2.1
394,374 - PFLU_RS01755 0.75 -0.1
394,374 - PFLU_RS01755 0.75 +0.3
394,374 - PFLU_RS01755 0.75 +0.7
394,383 + PFLU_RS01755 0.76 -1.4
394,454 + PFLU_RS01755 0.89 +0.7
394,454 + PFLU_RS01755 0.89 -1.1
394,455 - PFLU_RS01755 0.89 +1.9
394,455 - PFLU_RS01755 0.89 -0.8
394,514 + +0.3
394,514 + +0.7
394,515 - -0.2
394,596 - +0.9
394,596 - +0.5
394,596 - -0.0
394,821 + PFLU_RS01760 0.13 +0.2
394,821 + PFLU_RS01760 0.13 +1.2
394,822 - PFLU_RS01760 0.13 -0.6
394,962 + PFLU_RS01760 0.23 +0.6
394,963 - PFLU_RS01760 0.23 +0.5
394,963 - PFLU_RS01760 0.23 -0.2
394,963 - PFLU_RS01760 0.23 +0.5
394,963 - PFLU_RS01760 0.23 -1.5
395,001 + PFLU_RS01760 0.26 +1.3
395,002 - PFLU_RS01760 0.26 -0.0
395,002 - PFLU_RS01760 0.26 +0.0
395,085 + PFLU_RS01760 0.32 -0.3
395,085 + PFLU_RS01760 0.32 +2.1
395,086 - PFLU_RS01760 0.32 +0.8
395,241 + PFLU_RS01760 0.44 +0.3
395,241 + PFLU_RS01760 0.44 +0.2
395,242 - PFLU_RS01760 0.44 +0.4
395,242 - PFLU_RS01760 0.44 -2.8
395,242 - PFLU_RS01760 0.44 +0.2
395,242 - PFLU_RS01760 0.44 +0.5
395,242 - PFLU_RS01760 0.44 -1.4
395,318 - PFLU_RS01760 0.49 +0.1
395,318 - PFLU_RS01760 0.49 -0.8
395,463 + PFLU_RS01760 0.60 +0.4
395,463 + PFLU_RS01760 0.60 -0.2
395,463 + PFLU_RS01760 0.60 -0.9
395,463 + PFLU_RS01760 0.60 -0.6
395,463 + PFLU_RS01760 0.60 +1.1
395,464 - PFLU_RS01760 0.60 -0.0
395,464 - PFLU_RS01760 0.60 -0.2
395,464 - PFLU_RS01760 0.60 -0.5
395,464 - PFLU_RS01760 0.60 -1.1
395,482 + PFLU_RS01760 0.61 +0.2
395,483 - PFLU_RS01760 0.61 -0.2
395,483 - PFLU_RS01760 0.61 -0.1

Or see this region's nucleotide sequence