Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4134

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4132 and Ga0059261_4133 are separated by 5 nucleotidesGa0059261_4133 and Ga0059261_4134 are separated by 10 nucleotidesGa0059261_4134 and Ga0059261_4135 are separated by 121 nucleotidesGa0059261_4135 and Ga0059261_4136 overlap by 50 nucleotidesGa0059261_4136 and Ga0059261_4137 overlap by 4 nucleotides Ga0059261_4132: Ga0059261_4132 - succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), at 4,294,651 to 4,296,066 _4132 Ga0059261_4133: Ga0059261_4133 - hypothetical protein, at 4,296,072 to 4,296,333 _4133 Ga0059261_4134: Ga0059261_4134 - tRNA, at 4,296,344 to 4,296,419 _4134 Ga0059261_4135: Ga0059261_4135 - DnaJ domain, at 4,296,541 to 4,297,077 _4135 Ga0059261_4136: Ga0059261_4136 - hypothetical protein, at 4,297,028 to 4,297,387 _4136 Ga0059261_4137: Ga0059261_4137 - SufE protein probably involved in Fe-S center assembly, at 4,297,384 to 4,297,800 _4137 Position (kb) 4296 4297Strain fitness (log2 ratio) -2 -1 0 1 2at 4295.850 kb on - strand, within Ga0059261_4132at 4295.974 kb on + strandat 4295.974 kb on + strandat 4295.974 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.977 kb on + strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.978 kb on - strandat 4295.990 kb on - strandat 4295.990 kb on - strandat 4295.998 kb on + strandat 4295.999 kb on - strandat 4296.256 kb on - strand, within Ga0059261_4133at 4296.256 kb on - strand, within Ga0059261_4133at 4296.278 kb on + strandat 4296.279 kb on - strand, within Ga0059261_4133at 4296.280 kb on + strand, within Ga0059261_4133at 4296.280 kb on + strand, within Ga0059261_4133at 4296.281 kb on - strand, within Ga0059261_4133at 4296.281 kb on - strand, within Ga0059261_4133at 4296.281 kb on - strand, within Ga0059261_4133at 4296.399 kb on - strand, within Ga0059261_4134at 4296.399 kb on - strand, within Ga0059261_4134at 4296.406 kb on + strand, within Ga0059261_4134at 4296.407 kb on - strand, within Ga0059261_4134at 4296.442 kb on + strandat 4296.442 kb on + strandat 4296.443 kb on - strandat 4296.528 kb on + strandat 4296.528 kb on + strandat 4296.529 kb on - strandat 4296.700 kb on + strand, within Ga0059261_4135at 4296.700 kb on + strand, within Ga0059261_4135at 4296.701 kb on - strand, within Ga0059261_4135at 4296.728 kb on - strand, within Ga0059261_4135at 4296.728 kb on - strand, within Ga0059261_4135at 4296.728 kb on - strand, within Ga0059261_4135at 4296.745 kb on + strand, within Ga0059261_4135at 4296.745 kb on + strand, within Ga0059261_4135at 4296.745 kb on + strand, within Ga0059261_4135at 4296.746 kb on - strand, within Ga0059261_4135at 4296.822 kb on + strand, within Ga0059261_4135at 4296.831 kb on + strand, within Ga0059261_4135at 4296.832 kb on - strand, within Ga0059261_4135at 4296.832 kb on - strand, within Ga0059261_4135at 4297.027 kb on + strandat 4297.027 kb on + strandat 4297.027 kb on + strandat 4297.028 kb on - strandat 4297.028 kb on - strandat 4297.028 kb on - strandat 4297.028 kb on - strandat 4297.098 kb on + strand, within Ga0059261_4136at 4297.099 kb on - strand, within Ga0059261_4136at 4297.099 kb on - strand, within Ga0059261_4136at 4297.099 kb on - strand, within Ga0059261_4136at 4297.099 kb on - strand, within Ga0059261_4136at 4297.218 kb on + strand, within Ga0059261_4136at 4297.218 kb on + strand, within Ga0059261_4136at 4297.218 kb on + strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.219 kb on - strand, within Ga0059261_4136at 4297.257 kb on + strand, within Ga0059261_4136at 4297.257 kb on + strand, within Ga0059261_4136at 4297.258 kb on - strand, within Ga0059261_4136at 4297.258 kb on - strand, within Ga0059261_4136at 4297.258 kb on - strand, within Ga0059261_4136at 4297.385 kb on + strandat 4297.386 kb on - strandat 4297.391 kb on + strandat 4297.392 kb on - strandat 4297.392 kb on - strandat 4297.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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4,295,850 - Ga0059261_4132 0.85 -0.4
4,295,974 + +0.1
4,295,974 + -0.7
4,295,974 + +0.9
4,295,977 + +0.3
4,295,977 + +0.5
4,295,977 + -0.3
4,295,977 + -0.1
4,295,977 + -0.1
4,295,977 + -0.5
4,295,977 + +0.4
4,295,978 - +0.5
4,295,978 - +0.3
4,295,978 - +0.1
4,295,978 - +1.4
4,295,978 - -0.3
4,295,978 - -0.2
4,295,978 - -2.0
4,295,990 - -0.4
4,295,990 - -0.4
4,295,998 + -0.0
4,295,999 - -0.0
4,296,256 - Ga0059261_4133 0.70 +0.2
4,296,256 - Ga0059261_4133 0.70 -0.1
4,296,278 + +1.8
4,296,279 - Ga0059261_4133 0.79 +0.3
4,296,280 + Ga0059261_4133 0.79 -0.4
4,296,280 + Ga0059261_4133 0.79 -0.0
4,296,281 - Ga0059261_4133 0.80 -0.6
4,296,281 - Ga0059261_4133 0.80 +0.3
4,296,281 - Ga0059261_4133 0.80 +0.1
4,296,399 - Ga0059261_4134 0.72 +0.0
4,296,399 - Ga0059261_4134 0.72 +0.1
4,296,406 + Ga0059261_4134 0.82 +0.6
4,296,407 - Ga0059261_4134 0.83 +0.1
4,296,442 + -0.6
4,296,442 + -0.3
4,296,443 - -0.0
4,296,528 + -0.5
4,296,528 + +0.5
4,296,529 - +0.1
4,296,700 + Ga0059261_4135 0.30 -0.3
4,296,700 + Ga0059261_4135 0.30 +0.4
4,296,701 - Ga0059261_4135 0.30 +0.3
4,296,728 - Ga0059261_4135 0.35 +0.3
4,296,728 - Ga0059261_4135 0.35 -0.5
4,296,728 - Ga0059261_4135 0.35 -0.2
4,296,745 + Ga0059261_4135 0.38 -0.3
4,296,745 + Ga0059261_4135 0.38 -0.6
4,296,745 + Ga0059261_4135 0.38 +0.7
4,296,746 - Ga0059261_4135 0.38 +0.2
4,296,822 + Ga0059261_4135 0.52 +0.1
4,296,831 + Ga0059261_4135 0.54 -0.2
4,296,832 - Ga0059261_4135 0.54 +0.2
4,296,832 - Ga0059261_4135 0.54 -0.1
4,297,027 + +1.0
4,297,027 + +0.6
4,297,027 + +0.4
4,297,028 - +0.1
4,297,028 - +1.7
4,297,028 - +0.3
4,297,028 - +0.3
4,297,098 + Ga0059261_4136 0.19 -0.1
4,297,099 - Ga0059261_4136 0.20 -0.7
4,297,099 - Ga0059261_4136 0.20 +0.9
4,297,099 - Ga0059261_4136 0.20 +0.1
4,297,099 - Ga0059261_4136 0.20 -0.3
4,297,218 + Ga0059261_4136 0.53 +0.5
4,297,218 + Ga0059261_4136 0.53 -0.3
4,297,218 + Ga0059261_4136 0.53 +0.2
4,297,219 - Ga0059261_4136 0.53 +2.3
4,297,219 - Ga0059261_4136 0.53 +0.3
4,297,219 - Ga0059261_4136 0.53 +0.1
4,297,219 - Ga0059261_4136 0.53 -0.3
4,297,219 - Ga0059261_4136 0.53 +0.3
4,297,219 - Ga0059261_4136 0.53 +0.5
4,297,257 + Ga0059261_4136 0.64 -0.5
4,297,257 + Ga0059261_4136 0.64 -0.2
4,297,258 - Ga0059261_4136 0.64 -0.8
4,297,258 - Ga0059261_4136 0.64 -0.4
4,297,258 - Ga0059261_4136 0.64 +0.4
4,297,385 + -0.4
4,297,386 - +0.5
4,297,391 + -0.6
4,297,392 - +0.2
4,297,392 - -0.2
4,297,392 - -0.7

Or see this region's nucleotide sequence