Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2220

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2219 and Ga0059261_2220 overlap by 4 nucleotidesGa0059261_2220 and Ga0059261_2221 are separated by 259 nucleotides Ga0059261_2219: Ga0059261_2219 - GTP cyclohydrolase II, at 2,322,267 to 2,323,325 _2219 Ga0059261_2220: Ga0059261_2220 - exodeoxyribonuclease III (xth), at 2,323,322 to 2,324,194 _2220 Ga0059261_2221: Ga0059261_2221 - Outer membrane lipoprotein-sorting protein, at 2,324,454 to 2,325,086 _2221 Position (kb) 2323 2324 2325Strain fitness (log2 ratio) -2 -1 0 1 2at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.439 kb on - strand, within Ga0059261_2220at 2323.795 kb on - strand, within Ga0059261_2220at 2323.795 kb on - strand, within Ga0059261_2220at 2323.795 kb on - strand, within Ga0059261_2220at 2323.954 kb on - strand, within Ga0059261_2220at 2323.954 kb on - strand, within Ga0059261_2220at 2324.122 kb on - strandat 2324.122 kb on - strandat 2324.122 kb on - strandat 2324.122 kb on - strandat 2324.122 kb on - strandat 2324.122 kb on - strandat 2324.212 kb on + strandat 2324.212 kb on + strandat 2324.212 kb on + strandat 2324.213 kb on - strandat 2324.213 kb on - strandat 2324.213 kb on - strandat 2324.222 kb on + strandat 2324.222 kb on + strandat 2324.222 kb on + strandat 2324.222 kb on + strandat 2324.222 kb on + strandat 2324.222 kb on + strandat 2324.223 kb on - strandat 2324.223 kb on - strandat 2324.223 kb on - strandat 2324.223 kb on - strandat 2324.275 kb on + strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.276 kb on - strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.351 kb on + strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.352 kb on - strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.397 kb on + strandat 2324.398 kb on + strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.398 kb on - strandat 2324.412 kb on + strandat 2324.413 kb on - strandat 2325.087 kb on - strandat 2325.127 kb on + strandat 2325.128 kb on - strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.170 kb on + strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.171 kb on - strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.175 kb on + strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strandat 2325.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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2,323,439 - Ga0059261_2220 0.13 +0.9
2,323,439 - Ga0059261_2220 0.13 +0.1
2,323,439 - Ga0059261_2220 0.13 +0.5
2,323,439 - Ga0059261_2220 0.13 -0.1
2,323,439 - Ga0059261_2220 0.13 -0.2
2,323,439 - Ga0059261_2220 0.13 -0.7
2,323,439 - Ga0059261_2220 0.13 +0.3
2,323,439 - Ga0059261_2220 0.13 +0.8
2,323,795 - Ga0059261_2220 0.54 -0.4
2,323,795 - Ga0059261_2220 0.54 +0.2
2,323,795 - Ga0059261_2220 0.54 +0.7
2,323,954 - Ga0059261_2220 0.72 -0.4
2,323,954 - Ga0059261_2220 0.72 +0.6
2,324,122 - -0.2
2,324,122 - -0.1
2,324,122 - -0.1
2,324,122 - +0.4
2,324,122 - -1.0
2,324,122 - -0.3
2,324,212 + +0.6
2,324,212 + -0.0
2,324,212 + +0.0
2,324,213 - +0.3
2,324,213 - -0.5
2,324,213 - -0.1
2,324,222 + -0.1
2,324,222 + -0.5
2,324,222 + -0.0
2,324,222 + -0.1
2,324,222 + +1.2
2,324,222 + +0.9
2,324,223 - +0.7
2,324,223 - +0.7
2,324,223 - +0.2
2,324,223 - +0.2
2,324,275 + -0.4
2,324,276 - -0.2
2,324,276 - +0.9
2,324,276 - +0.2
2,324,276 - +0.2
2,324,351 + -1.0
2,324,351 + -1.2
2,324,351 + -0.7
2,324,351 + -0.6
2,324,352 - -1.3
2,324,352 - -1.0
2,324,352 - -0.2
2,324,352 - -1.2
2,324,352 - -1.0
2,324,397 + -0.4
2,324,397 + -1.8
2,324,397 + -0.0
2,324,397 + -2.0
2,324,397 + -0.9
2,324,397 + -0.9
2,324,397 + -0.0
2,324,397 + -0.8
2,324,397 + -0.3
2,324,397 + -1.6
2,324,398 + -1.5
2,324,398 - -0.4
2,324,398 - -1.8
2,324,398 - -1.1
2,324,398 - -0.3
2,324,398 - +0.0
2,324,398 - -1.3
2,324,398 - -1.6
2,324,412 + -0.0
2,324,413 - -0.5
2,325,087 - -2.0
2,325,127 + +0.7
2,325,128 - +0.3
2,325,170 + +1.0
2,325,170 + -0.3
2,325,170 + -0.9
2,325,170 + -0.8
2,325,170 + +0.1
2,325,170 + +0.3
2,325,170 + -0.5
2,325,170 + -0.1
2,325,170 + -0.8
2,325,171 - -0.9
2,325,171 - +0.1
2,325,171 - +0.1
2,325,171 - -0.0
2,325,171 - +0.6
2,325,171 - -1.4
2,325,171 - -0.3
2,325,171 - +0.1
2,325,171 - +0.4
2,325,171 - +0.8
2,325,171 - -0.1
2,325,171 - +0.9
2,325,175 + -0.0
2,325,175 + -0.3
2,325,175 + +2.2
2,325,175 + -0.1
2,325,175 + +1.0
2,325,175 + -1.5
2,325,175 + +0.8
2,325,175 + -1.1
2,325,175 + +1.8
2,325,175 + -0.1
2,325,175 + -0.1
2,325,175 + +1.2
2,325,175 + -0.7
2,325,175 + -0.9
2,325,175 + +0.5
2,325,175 + +0.2
2,325,175 + -0.5
2,325,175 + -0.5
2,325,175 + -0.5
2,325,175 + -0.6
2,325,175 + -1.8
2,325,175 + -0.1
2,325,175 + +1.2
2,325,176 - -0.1
2,325,176 - +0.6
2,325,176 - -0.6
2,325,176 - +0.3
2,325,176 - +0.0
2,325,176 - +0.6
2,325,176 - -0.1
2,325,176 - -0.7
2,325,176 - -0.7
2,325,176 - -0.5
2,325,176 - -1.0
2,325,176 - -0.1
2,325,176 - -0.0
2,325,176 - -0.3
2,325,176 - +0.6
2,325,176 - +0.1
2,325,176 - -0.3
2,325,176 - +0.4
2,325,176 - -0.6
2,325,176 - -0.4

Or see this region's nucleotide sequence