Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1928

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1927 and Ga0059261_1928 are separated by 60 nucleotidesGa0059261_1928 and Ga0059261_1929 overlap by 4 nucleotidesGa0059261_1929 and Ga0059261_1930 are separated by 66 nucleotides Ga0059261_1927: Ga0059261_1927 - hypothetical protein, at 2,035,449 to 2,036,453 _1927 Ga0059261_1928: Ga0059261_1928 - Predicted permeases, at 2,036,514 to 2,037,428 _1928 Ga0059261_1929: Ga0059261_1929 - Putative transmembrane protein (Alph_Pro_TM), at 2,037,425 to 2,038,237 _1929 Ga0059261_1930: Ga0059261_1930 - Predicted ATPase, at 2,038,304 to 2,039,977 _1930 Position (kb) 2036 2037 2038Strain fitness (log2 ratio) -3 -2 -1 0 1at 2035.935 kb on + strand, within Ga0059261_1927at 2035.935 kb on + strand, within Ga0059261_1927at 2035.935 kb on + strand, within Ga0059261_1927at 2035.935 kb on + strand, within Ga0059261_1927at 2035.935 kb on + strand, within Ga0059261_1927at 2035.935 kb on + strand, within Ga0059261_1927at 2035.936 kb on - strand, within Ga0059261_1927at 2035.936 kb on - strand, within Ga0059261_1927at 2035.936 kb on - strand, within Ga0059261_1927at 2036.124 kb on + strand, within Ga0059261_1927at 2036.125 kb on - strand, within Ga0059261_1927at 2036.125 kb on - strand, within Ga0059261_1927at 2036.125 kb on - strand, within Ga0059261_1927at 2036.163 kb on + strand, within Ga0059261_1927at 2036.163 kb on + strand, within Ga0059261_1927at 2036.163 kb on + strand, within Ga0059261_1927at 2036.164 kb on - strand, within Ga0059261_1927at 2036.452 kb on - strandat 2036.499 kb on - strandat 2036.499 kb on - strandat 2036.523 kb on + strandat 2036.523 kb on + strandat 2036.523 kb on + strandat 2036.756 kb on + strand, within Ga0059261_1928at 2036.756 kb on + strandat 2036.756 kb on + strand, within Ga0059261_1928at 2036.865 kb on + strand, within Ga0059261_1928at 2036.865 kb on + strand, within Ga0059261_1928at 2036.865 kb on + strand, within Ga0059261_1928at 2036.865 kb on + strand, within Ga0059261_1928at 2036.866 kb on - strand, within Ga0059261_1928at 2037.012 kb on + strand, within Ga0059261_1928at 2037.027 kb on + strand, within Ga0059261_1928at 2037.027 kb on + strand, within Ga0059261_1928at 2037.028 kb on - strand, within Ga0059261_1928at 2037.028 kb on - strand, within Ga0059261_1928at 2037.130 kb on - strand, within Ga0059261_1928at 2037.130 kb on - strand, within Ga0059261_1928at 2037.130 kb on - strand, within Ga0059261_1928at 2037.576 kb on - strand, within Ga0059261_1929at 2037.576 kb on - strand, within Ga0059261_1929at 2037.779 kb on + strand, within Ga0059261_1929at 2037.779 kb on + strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strand, within Ga0059261_1929at 2037.780 kb on - strandat 2037.839 kb on + strand, within Ga0059261_1929at 2037.839 kb on + strand, within Ga0059261_1929at 2037.839 kb on + strand, within Ga0059261_1929at 2037.840 kb on - strand, within Ga0059261_1929at 2037.840 kb on - strand, within Ga0059261_1929at 2037.950 kb on + strand, within Ga0059261_1929at 2037.950 kb on + strand, within Ga0059261_1929at 2037.953 kb on + strand, within Ga0059261_1929at 2037.953 kb on + strand, within Ga0059261_1929at 2037.953 kb on + strand, within Ga0059261_1929at 2037.954 kb on - strand, within Ga0059261_1929at 2037.954 kb on - strand, within Ga0059261_1929at 2038.092 kb on + strand, within Ga0059261_1929at 2038.166 kb on + strandat 2038.166 kb on + strandat 2038.235 kb on + strandat 2038.257 kb on + strandat 2038.257 kb on + strandat 2038.257 kb on + strandat 2038.258 kb on - strandat 2038.273 kb on + strandat 2038.273 kb on + strandat 2038.273 kb on + strandat 2038.273 kb on + strandat 2038.274 kb on - strandat 2038.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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2,035,935 + Ga0059261_1927 0.48 -1.3
2,035,935 + Ga0059261_1927 0.48 -0.1
2,035,935 + Ga0059261_1927 0.48 -2.0
2,035,935 + Ga0059261_1927 0.48 -0.6
2,035,935 + Ga0059261_1927 0.48 -0.3
2,035,935 + Ga0059261_1927 0.48 -0.1
2,035,936 - Ga0059261_1927 0.48 +0.4
2,035,936 - Ga0059261_1927 0.48 -0.1
2,035,936 - Ga0059261_1927 0.48 -0.5
2,036,124 + Ga0059261_1927 0.67 -0.0
2,036,125 - Ga0059261_1927 0.67 -0.1
2,036,125 - Ga0059261_1927 0.67 +0.5
2,036,125 - Ga0059261_1927 0.67 -0.4
2,036,163 + Ga0059261_1927 0.71 -0.1
2,036,163 + Ga0059261_1927 0.71 +0.1
2,036,163 + Ga0059261_1927 0.71 -0.4
2,036,164 - Ga0059261_1927 0.71 -0.4
2,036,452 - +0.4
2,036,499 - +0.6
2,036,499 - -0.1
2,036,523 + +0.1
2,036,523 + -1.1
2,036,523 + -1.1
2,036,756 + Ga0059261_1928 0.26 -0.1
2,036,756 + -1.4
2,036,756 + Ga0059261_1928 0.26 -1.4
2,036,865 + Ga0059261_1928 0.38 -0.5
2,036,865 + Ga0059261_1928 0.38 +0.2
2,036,865 + Ga0059261_1928 0.38 -1.0
2,036,865 + Ga0059261_1928 0.38 -1.9
2,036,866 - Ga0059261_1928 0.38 -0.2
2,037,012 + Ga0059261_1928 0.54 -1.4
2,037,027 + Ga0059261_1928 0.56 +0.3
2,037,027 + Ga0059261_1928 0.56 -0.1
2,037,028 - Ga0059261_1928 0.56 -1.4
2,037,028 - Ga0059261_1928 0.56 -1.1
2,037,130 - Ga0059261_1928 0.67 -0.4
2,037,130 - Ga0059261_1928 0.67 -0.5
2,037,130 - Ga0059261_1928 0.67 -0.4
2,037,576 - Ga0059261_1929 0.19 +0.2
2,037,576 - Ga0059261_1929 0.19 +0.3
2,037,779 + Ga0059261_1929 0.44 -1.6
2,037,779 + Ga0059261_1929 0.44 -0.8
2,037,780 - Ga0059261_1929 0.44 -0.9
2,037,780 - Ga0059261_1929 0.44 -1.7
2,037,780 - Ga0059261_1929 0.44 +1.0
2,037,780 - Ga0059261_1929 0.44 -3.1
2,037,780 - Ga0059261_1929 0.44 -0.6
2,037,780 - Ga0059261_1929 0.44 -0.1
2,037,780 - -0.4
2,037,839 + Ga0059261_1929 0.51 -1.0
2,037,839 + Ga0059261_1929 0.51 -0.8
2,037,839 + Ga0059261_1929 0.51 -0.2
2,037,840 - Ga0059261_1929 0.51 -0.0
2,037,840 - Ga0059261_1929 0.51 -1.1
2,037,950 + Ga0059261_1929 0.65 +0.2
2,037,950 + Ga0059261_1929 0.65 -0.2
2,037,953 + Ga0059261_1929 0.65 -0.7
2,037,953 + Ga0059261_1929 0.65 -0.1
2,037,953 + Ga0059261_1929 0.65 +0.2
2,037,954 - Ga0059261_1929 0.65 -0.5
2,037,954 - Ga0059261_1929 0.65 +0.8
2,038,092 + Ga0059261_1929 0.82 -1.3
2,038,166 + -0.8
2,038,166 + -0.6
2,038,235 + -0.3
2,038,257 + +0.1
2,038,257 + +0.1
2,038,257 + -0.6
2,038,258 - -1.0
2,038,273 + +0.3
2,038,273 + -0.3
2,038,273 + +0.2
2,038,273 + -0.1
2,038,274 - +0.6
2,038,387 + -0.1

Or see this region's nucleotide sequence