Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1795

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1793 and Ga0059261_1794 overlap by 54 nucleotidesGa0059261_1794 and Ga0059261_1795 are separated by 134 nucleotidesGa0059261_1795 and Ga0059261_1796 are separated by 58 nucleotides Ga0059261_1793: Ga0059261_1793 - Site-specific recombinases, DNA invertase Pin homologs, at 1,903,509 to 1,905,155 _1793 Ga0059261_1794: Ga0059261_1794 - tRNA, at 1,905,102 to 1,905,188 _1794 Ga0059261_1795: Ga0059261_1795 - Predicted nucleoside-diphosphate-sugar epimerases, at 1,905,323 to 1,906,255 _1795 Ga0059261_1796: Ga0059261_1796 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 1,906,314 to 1,907,114 _1796 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -1 0 1at 1904.395 kb on + strandat 1904.411 kb on - strand, within Ga0059261_1793at 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.297 kb on + strandat 1905.298 kb on - strandat 1905.374 kb on + strandat 1905.374 kb on + strandat 1905.374 kb on + strandat 1905.375 kb on - strandat 1905.595 kb on + strand, within Ga0059261_1795at 1905.695 kb on + strand, within Ga0059261_1795at 1905.695 kb on + strand, within Ga0059261_1795at 1905.696 kb on - strand, within Ga0059261_1795at 1905.875 kb on + strand, within Ga0059261_1795at 1905.875 kb on + strand, within Ga0059261_1795at 1905.875 kb on + strand, within Ga0059261_1795at 1905.875 kb on + strand, within Ga0059261_1795at 1905.875 kb on + strand, within Ga0059261_1795at 1905.900 kb on + strand, within Ga0059261_1795at 1905.900 kb on + strand, within Ga0059261_1795at 1906.211 kb on + strandat 1906.211 kb on + strandat 1906.211 kb on + strandat 1906.212 kb on - strandat 1907.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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1,904,395 + +0.8
1,904,411 - Ga0059261_1793 0.55 +1.0
1,905,297 + -0.1
1,905,297 + +0.6
1,905,297 + -1.3
1,905,297 + +0.1
1,905,297 + -0.8
1,905,297 + -0.4
1,905,297 + +0.2
1,905,297 + +0.8
1,905,298 - -0.6
1,905,374 + +0.8
1,905,374 + +0.2
1,905,374 + +0.0
1,905,375 - -1.1
1,905,595 + Ga0059261_1795 0.29 -1.2
1,905,695 + Ga0059261_1795 0.40 -1.3
1,905,695 + Ga0059261_1795 0.40 -0.3
1,905,696 - Ga0059261_1795 0.40 -0.3
1,905,875 + Ga0059261_1795 0.59 -0.4
1,905,875 + Ga0059261_1795 0.59 -0.1
1,905,875 + Ga0059261_1795 0.59 -0.4
1,905,875 + Ga0059261_1795 0.59 -0.8
1,905,875 + Ga0059261_1795 0.59 -0.8
1,905,900 + Ga0059261_1795 0.62 -0.0
1,905,900 + Ga0059261_1795 0.62 -0.1
1,906,211 + -0.6
1,906,211 + -1.0
1,906,211 + +0.3
1,906,212 - +0.0
1,907,196 - -0.2

Or see this region's nucleotide sequence