Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1737

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1736 and Ga0059261_1737 are separated by 44 nucleotidesGa0059261_1737 and Ga0059261_1738 are separated by 9 nucleotides Ga0059261_1736: Ga0059261_1736 - Transposase and inactivated derivatives, at 1,839,831 to 1,841,330 _1736 Ga0059261_1737: Ga0059261_1737 - hypothetical protein, at 1,841,375 to 1,841,782 _1737 Ga0059261_1738: Ga0059261_1738 - Ti-type conjugative transfer relaxase TraA, at 1,841,792 to 1,844,608 _1738 Position (kb) 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2at 1841.647 kb on + strand, within Ga0059261_1737at 1841.647 kb on + strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.648 kb on - strand, within Ga0059261_1737at 1841.649 kb on + strand, within Ga0059261_1737at 1841.649 kb on + strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.650 kb on - strand, within Ga0059261_1737at 1841.708 kb on - strand, within Ga0059261_1737at 1841.793 kb on + strandat 1841.793 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.830 kb on + strandat 1841.831 kb on - strandat 1841.831 kb on - strandat 1841.831 kb on - strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.982 kb on + strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1841.983 kb on - strandat 1842.017 kb on + strandat 1842.017 kb on + strandat 1842.017 kb on + strandat 1842.018 kb on - strandat 1842.018 kb on - strandat 1842.018 kb on - strandat 1842.282 kb on + strand, within Ga0059261_1738at 1842.282 kb on + strand, within Ga0059261_1738at 1842.282 kb on + strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.283 kb on - strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.300 kb on + strand, within Ga0059261_1738at 1842.426 kb on + strand, within Ga0059261_1738at 1842.426 kb on + strand, within Ga0059261_1738at 1842.426 kb on + strand, within Ga0059261_1738at 1842.507 kb on + strand, within Ga0059261_1738at 1842.507 kb on + strand, within Ga0059261_1738at 1842.507 kb on + strand, within Ga0059261_1738at 1842.507 kb on + strand, within Ga0059261_1738at 1842.508 kb on - strand, within Ga0059261_1738at 1842.508 kb on - strand, within Ga0059261_1738at 1842.508 kb on - strand, within Ga0059261_1738at 1842.508 kb on - strandat 1842.508 kb on - strand, within Ga0059261_1738at 1842.508 kb on - strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.510 kb on + strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.511 kb on - strand, within Ga0059261_1738at 1842.549 kb on + strand, within Ga0059261_1738at 1842.549 kb on + strand, within Ga0059261_1738at 1842.549 kb on + strand, within Ga0059261_1738at 1842.549 kb on + strand, within Ga0059261_1738at 1842.549 kb on + strand, within Ga0059261_1738at 1842.550 kb on - strand, within Ga0059261_1738at 1842.550 kb on - strand, within Ga0059261_1738at 1842.550 kb on - strand, within Ga0059261_1738at 1842.550 kb on - strand, within Ga0059261_1738at 1842.550 kb on - strand, within Ga0059261_1738at 1842.619 kb on + strand, within Ga0059261_1738at 1842.619 kb on + strand, within Ga0059261_1738at 1842.619 kb on + strand, within Ga0059261_1738at 1842.619 kb on + strand, within Ga0059261_1738at 1842.619 kb on + strand, within Ga0059261_1738at 1842.620 kb on - strand, within Ga0059261_1738at 1842.620 kb on - strand, within Ga0059261_1738at 1842.620 kb on - strand, within Ga0059261_1738at 1842.620 kb on - strand, within Ga0059261_1738at 1842.637 kb on - strand, within Ga0059261_1738at 1842.637 kb on - strand, within Ga0059261_1738at 1842.649 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.657 kb on + strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738at 1842.658 kb on - strand, within Ga0059261_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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1,841,647 + Ga0059261_1737 0.67 -1.1
1,841,647 + Ga0059261_1737 0.67 +0.1
1,841,648 - Ga0059261_1737 0.67 -0.0
1,841,648 - Ga0059261_1737 0.67 -0.7
1,841,648 - Ga0059261_1737 0.67 +0.5
1,841,648 - Ga0059261_1737 0.67 -0.3
1,841,649 + Ga0059261_1737 0.67 -0.4
1,841,649 + Ga0059261_1737 0.67 -0.4
1,841,650 - Ga0059261_1737 0.67 -0.3
1,841,650 - Ga0059261_1737 0.67 -0.4
1,841,650 - Ga0059261_1737 0.67 -0.1
1,841,650 - Ga0059261_1737 0.67 +0.4
1,841,708 - Ga0059261_1737 0.82 -0.0
1,841,793 + +1.3
1,841,793 + +0.2
1,841,830 + -0.4
1,841,830 + +0.3
1,841,830 + -0.1
1,841,830 + +0.2
1,841,831 - -0.6
1,841,831 - +0.9
1,841,831 - -0.3
1,841,982 + +0.6
1,841,982 + +0.0
1,841,982 + +0.1
1,841,982 + +0.5
1,841,983 - +0.5
1,841,983 - -1.1
1,841,983 - +0.1
1,841,983 - -0.0
1,841,983 - +0.7
1,841,983 - +0.1
1,841,983 - +0.1
1,841,983 - -0.0
1,842,017 + -0.5
1,842,017 + -0.0
1,842,017 + -0.2
1,842,018 - +0.5
1,842,018 - +0.5
1,842,018 - -0.7
1,842,282 + Ga0059261_1738 0.17 +0.6
1,842,282 + Ga0059261_1738 0.17 -2.2
1,842,282 + Ga0059261_1738 0.17 -0.2
1,842,283 - Ga0059261_1738 0.17 -0.2
1,842,283 - Ga0059261_1738 0.17 -0.6
1,842,283 - Ga0059261_1738 0.17 -0.0
1,842,283 - Ga0059261_1738 0.17 +0.4
1,842,283 - Ga0059261_1738 0.17 +0.5
1,842,300 + Ga0059261_1738 0.18 -0.7
1,842,300 + Ga0059261_1738 0.18 -0.2
1,842,300 + Ga0059261_1738 0.18 +0.6
1,842,300 + Ga0059261_1738 0.18 +0.6
1,842,300 + Ga0059261_1738 0.18 -0.0
1,842,300 + Ga0059261_1738 0.18 -0.5
1,842,426 + Ga0059261_1738 0.23 +0.0
1,842,426 + Ga0059261_1738 0.23 -0.4
1,842,426 + Ga0059261_1738 0.23 -0.5
1,842,507 + Ga0059261_1738 0.25 -0.9
1,842,507 + Ga0059261_1738 0.25 -0.5
1,842,507 + Ga0059261_1738 0.25 -2.0
1,842,507 + Ga0059261_1738 0.25 +0.5
1,842,508 - Ga0059261_1738 0.25 +1.2
1,842,508 - Ga0059261_1738 0.25 +0.1
1,842,508 - Ga0059261_1738 0.25 +0.4
1,842,508 - +0.7
1,842,508 - Ga0059261_1738 0.25 -0.6
1,842,508 - Ga0059261_1738 0.25 +0.5
1,842,510 + Ga0059261_1738 0.25 -0.5
1,842,510 + Ga0059261_1738 0.25 -1.5
1,842,510 + Ga0059261_1738 0.25 +0.2
1,842,510 + Ga0059261_1738 0.25 -0.5
1,842,510 + Ga0059261_1738 0.25 -0.4
1,842,510 + Ga0059261_1738 0.25 +0.8
1,842,510 + Ga0059261_1738 0.25 +0.8
1,842,511 - Ga0059261_1738 0.26 -0.1
1,842,511 - Ga0059261_1738 0.26 -0.4
1,842,511 - Ga0059261_1738 0.26 -0.2
1,842,511 - Ga0059261_1738 0.26 +0.1
1,842,511 - Ga0059261_1738 0.26 +0.0
1,842,511 - Ga0059261_1738 0.26 +0.4
1,842,511 - Ga0059261_1738 0.26 -0.3
1,842,511 - Ga0059261_1738 0.26 +0.2
1,842,511 - Ga0059261_1738 0.26 +0.0
1,842,549 + Ga0059261_1738 0.27 -0.1
1,842,549 + Ga0059261_1738 0.27 +0.6
1,842,549 + Ga0059261_1738 0.27 +0.3
1,842,549 + Ga0059261_1738 0.27 +0.2
1,842,549 + Ga0059261_1738 0.27 +0.0
1,842,550 - Ga0059261_1738 0.27 +0.3
1,842,550 - Ga0059261_1738 0.27 -0.1
1,842,550 - Ga0059261_1738 0.27 -0.3
1,842,550 - Ga0059261_1738 0.27 -0.8
1,842,550 - Ga0059261_1738 0.27 -0.0
1,842,619 + Ga0059261_1738 0.29 -0.3
1,842,619 + Ga0059261_1738 0.29 +0.0
1,842,619 + Ga0059261_1738 0.29 -0.1
1,842,619 + Ga0059261_1738 0.29 +0.5
1,842,619 + Ga0059261_1738 0.29 -0.9
1,842,620 - Ga0059261_1738 0.29 -0.5
1,842,620 - Ga0059261_1738 0.29 -0.1
1,842,620 - Ga0059261_1738 0.29 +0.4
1,842,620 - Ga0059261_1738 0.29 +1.9
1,842,637 - Ga0059261_1738 0.30 +0.4
1,842,637 - Ga0059261_1738 0.30 +0.4
1,842,649 + Ga0059261_1738 0.30 +0.5
1,842,657 + Ga0059261_1738 0.31 -0.1
1,842,657 + Ga0059261_1738 0.31 +0.7
1,842,657 + Ga0059261_1738 0.31 +0.0
1,842,657 + Ga0059261_1738 0.31 -0.8
1,842,657 + Ga0059261_1738 0.31 +0.8
1,842,657 + Ga0059261_1738 0.31 +0.1
1,842,657 + Ga0059261_1738 0.31 -0.8
1,842,657 + Ga0059261_1738 0.31 -0.1
1,842,657 + Ga0059261_1738 0.31 +0.7
1,842,658 - Ga0059261_1738 0.31 +0.3
1,842,658 - Ga0059261_1738 0.31 -0.3
1,842,658 - Ga0059261_1738 0.31 +0.2
1,842,658 - Ga0059261_1738 0.31 +1.4
1,842,658 - Ga0059261_1738 0.31 -0.4
1,842,658 - Ga0059261_1738 0.31 +0.2
1,842,658 - Ga0059261_1738 0.31 -0.4
1,842,658 - Ga0059261_1738 0.31 -0.2
1,842,658 - Ga0059261_1738 0.31 +0.1
1,842,658 - Ga0059261_1738 0.31 +0.1

Or see this region's nucleotide sequence