Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1262

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1260 and Ga0059261_1261 are separated by 111 nucleotidesGa0059261_1261 and Ga0059261_1262 are separated by 9 nucleotidesGa0059261_1262 and Ga0059261_1263 are separated by 94 nucleotidesGa0059261_1263 and Ga0059261_1264 overlap by 1 nucleotides Ga0059261_1260: Ga0059261_1260 - cobaltochelatase CobT subunit (EC 6.6.1.2), at 1,326,267 to 1,328,099 _1260 Ga0059261_1261: Ga0059261_1261 - hypothetical protein, at 1,328,211 to 1,328,768 _1261 Ga0059261_1262: Ga0059261_1262 - cobaltochelatase CobS subunit (EC 6.6.1.2), at 1,328,778 to 1,329,785 _1262 Ga0059261_1263: Ga0059261_1263 - hypothetical protein, at 1,329,880 to 1,330,173 _1263 Ga0059261_1264: Ga0059261_1264 - transcriptional regulator, HxlR family, at 1,330,173 to 1,330,874 _1264 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -2 -1 0 1 2at 1328.058 kb on - strandat 1328.065 kb on + strandat 1328.126 kb on + strandat 1328.182 kb on - strandat 1328.523 kb on + strand, within Ga0059261_1261at 1328.524 kb on - strand, within Ga0059261_1261at 1328.524 kb on - strand, within Ga0059261_1261at 1328.833 kb on + strandat 1328.833 kb on + strandat 1328.834 kb on - strandat 1328.834 kb on - strandat 1328.836 kb on + strandat 1328.836 kb on + strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.837 kb on - strandat 1328.924 kb on + strand, within Ga0059261_1262at 1329.056 kb on - strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.106 kb on + strand, within Ga0059261_1262at 1329.107 kb on - strandat 1329.107 kb on - strand, within Ga0059261_1262at 1329.107 kb on - strand, within Ga0059261_1262at 1329.107 kb on - strand, within Ga0059261_1262at 1329.107 kb on - strand, within Ga0059261_1262at 1329.107 kb on - strand, within Ga0059261_1262at 1329.172 kb on + strand, within Ga0059261_1262at 1329.172 kb on + strand, within Ga0059261_1262at 1329.172 kb on + strand, within Ga0059261_1262at 1329.173 kb on - strand, within Ga0059261_1262at 1329.173 kb on - strand, within Ga0059261_1262at 1329.173 kb on - strand, within Ga0059261_1262at 1329.229 kb on + strand, within Ga0059261_1262at 1329.229 kb on + strand, within Ga0059261_1262at 1329.229 kb on + strand, within Ga0059261_1262at 1329.230 kb on - strand, within Ga0059261_1262at 1329.230 kb on - strand, within Ga0059261_1262at 1329.334 kb on + strand, within Ga0059261_1262at 1329.334 kb on + strand, within Ga0059261_1262at 1329.335 kb on - strand, within Ga0059261_1262at 1329.452 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.461 kb on + strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.462 kb on - strand, within Ga0059261_1262at 1329.548 kb on - strand, within Ga0059261_1262at 1329.548 kb on - strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.622 kb on + strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.623 kb on - strand, within Ga0059261_1262at 1329.687 kb on - strandat 1329.818 kb on - strandat 1329.818 kb on - strandat 1329.818 kb on - strandat 1329.890 kb on + strandat 1329.890 kb on + strandat 1329.891 kb on - strandat 1329.891 kb on - strandat 1329.899 kb on - strandat 1329.899 kb on - strandat 1330.118 kb on + strand, within Ga0059261_1263at 1330.118 kb on + strand, within Ga0059261_1263at 1330.118 kb on + strand, within Ga0059261_1263at 1330.118 kb on + strand, within Ga0059261_1263at 1330.119 kb on - strand, within Ga0059261_1263at 1330.119 kb on - strand, within Ga0059261_1263at 1330.119 kb on - strand, within Ga0059261_1263at 1330.190 kb on + strandat 1330.190 kb on + strandat 1330.190 kb on + strandat 1330.190 kb on + strandat 1330.191 kb on - strandat 1330.191 kb on - strandat 1330.191 kb on - strandat 1330.191 kb on - strandat 1330.579 kb on + strand, within Ga0059261_1264at 1330.580 kb on - strand, within Ga0059261_1264at 1330.600 kb on + strand, within Ga0059261_1264at 1330.601 kb on - strand, within Ga0059261_1264at 1330.601 kb on - strand, within Ga0059261_1264

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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1,328,058 - +1.0
1,328,065 + +1.1
1,328,126 + +0.7
1,328,182 - +0.7
1,328,523 + Ga0059261_1261 0.56 -0.0
1,328,524 - Ga0059261_1261 0.56 +0.1
1,328,524 - Ga0059261_1261 0.56 +0.5
1,328,833 + +1.3
1,328,833 + -0.3
1,328,834 - +0.5
1,328,834 - +0.6
1,328,836 + +0.5
1,328,836 + +1.5
1,328,837 - +0.7
1,328,837 - +0.3
1,328,837 - -0.4
1,328,837 - -0.4
1,328,924 + Ga0059261_1262 0.14 +0.5
1,329,056 - Ga0059261_1262 0.28 +0.8
1,329,106 + Ga0059261_1262 0.33 +0.1
1,329,106 + Ga0059261_1262 0.33 -0.4
1,329,106 + Ga0059261_1262 0.33 +0.7
1,329,106 + Ga0059261_1262 0.33 +2.0
1,329,106 + Ga0059261_1262 0.33 +0.6
1,329,106 + Ga0059261_1262 0.33 +0.5
1,329,106 + Ga0059261_1262 0.33 +1.0
1,329,106 + Ga0059261_1262 0.33 +0.6
1,329,106 + Ga0059261_1262 0.33 +0.3
1,329,106 + Ga0059261_1262 0.33 +0.7
1,329,106 + Ga0059261_1262 0.33 -0.1
1,329,106 + Ga0059261_1262 0.33 +0.8
1,329,107 - +0.6
1,329,107 - Ga0059261_1262 0.33 +0.2
1,329,107 - Ga0059261_1262 0.33 +0.7
1,329,107 - Ga0059261_1262 0.33 +0.8
1,329,107 - Ga0059261_1262 0.33 +0.9
1,329,107 - Ga0059261_1262 0.33 -0.7
1,329,172 + Ga0059261_1262 0.39 +1.0
1,329,172 + Ga0059261_1262 0.39 +0.9
1,329,172 + Ga0059261_1262 0.39 +2.1
1,329,173 - Ga0059261_1262 0.39 +0.5
1,329,173 - Ga0059261_1262 0.39 +0.3
1,329,173 - Ga0059261_1262 0.39 -0.3
1,329,229 + Ga0059261_1262 0.45 -0.3
1,329,229 + Ga0059261_1262 0.45 -0.0
1,329,229 + Ga0059261_1262 0.45 +0.1
1,329,230 - Ga0059261_1262 0.45 +0.3
1,329,230 - Ga0059261_1262 0.45 -0.2
1,329,334 + Ga0059261_1262 0.55 -0.5
1,329,334 + Ga0059261_1262 0.55 +0.8
1,329,335 - Ga0059261_1262 0.55 +0.3
1,329,452 + Ga0059261_1262 0.67 +0.6
1,329,461 + Ga0059261_1262 0.68 +1.0
1,329,461 + Ga0059261_1262 0.68 +0.1
1,329,461 + Ga0059261_1262 0.68 +0.2
1,329,461 + Ga0059261_1262 0.68 +0.3
1,329,461 + Ga0059261_1262 0.68 +0.4
1,329,461 + Ga0059261_1262 0.68 +0.9
1,329,461 + Ga0059261_1262 0.68 +0.8
1,329,461 + Ga0059261_1262 0.68 +0.4
1,329,461 + Ga0059261_1262 0.68 +0.6
1,329,461 + Ga0059261_1262 0.68 +0.7
1,329,461 + Ga0059261_1262 0.68 +0.6
1,329,461 + Ga0059261_1262 0.68 +0.5
1,329,462 - Ga0059261_1262 0.68 +0.4
1,329,462 - Ga0059261_1262 0.68 +0.6
1,329,462 - Ga0059261_1262 0.68 +0.5
1,329,462 - Ga0059261_1262 0.68 -0.0
1,329,462 - Ga0059261_1262 0.68 -0.1
1,329,462 - Ga0059261_1262 0.68 +1.0
1,329,462 - Ga0059261_1262 0.68 +0.7
1,329,548 - Ga0059261_1262 0.76 -0.1
1,329,548 - Ga0059261_1262 0.76 +0.7
1,329,622 + Ga0059261_1262 0.84 -0.4
1,329,622 + Ga0059261_1262 0.84 -0.7
1,329,622 + Ga0059261_1262 0.84 +1.1
1,329,622 + Ga0059261_1262 0.84 +0.5
1,329,622 + Ga0059261_1262 0.84 +0.6
1,329,622 + Ga0059261_1262 0.84 -0.5
1,329,622 + Ga0059261_1262 0.84 +0.8
1,329,622 + Ga0059261_1262 0.84 +0.6
1,329,622 + Ga0059261_1262 0.84 -0.1
1,329,622 + Ga0059261_1262 0.84 -0.9
1,329,622 + Ga0059261_1262 0.84 +0.5
1,329,623 - Ga0059261_1262 0.84 -0.7
1,329,623 - Ga0059261_1262 0.84 +0.8
1,329,623 - Ga0059261_1262 0.84 +0.2
1,329,623 - Ga0059261_1262 0.84 +0.3
1,329,623 - Ga0059261_1262 0.84 +1.1
1,329,623 - Ga0059261_1262 0.84 +0.1
1,329,623 - Ga0059261_1262 0.84 +0.4
1,329,623 - Ga0059261_1262 0.84 +0.7
1,329,687 - -0.3
1,329,818 - +0.7
1,329,818 - +0.2
1,329,818 - +0.2
1,329,890 + +0.7
1,329,890 + +0.5
1,329,891 - -0.6
1,329,891 - -1.7
1,329,899 - +0.7
1,329,899 - +0.1
1,330,118 + Ga0059261_1263 0.81 +0.2
1,330,118 + Ga0059261_1263 0.81 -0.4
1,330,118 + Ga0059261_1263 0.81 -0.8
1,330,118 + Ga0059261_1263 0.81 -0.4
1,330,119 - Ga0059261_1263 0.81 +1.6
1,330,119 - Ga0059261_1263 0.81 +0.5
1,330,119 - Ga0059261_1263 0.81 +0.3
1,330,190 + -0.1
1,330,190 + -0.5
1,330,190 + -0.3
1,330,190 + +0.2
1,330,191 - +0.5
1,330,191 - -0.4
1,330,191 - -0.2
1,330,191 - +0.5
1,330,579 + Ga0059261_1264 0.58 -1.3
1,330,580 - Ga0059261_1264 0.58 -1.9
1,330,600 + Ga0059261_1264 0.61 -0.9
1,330,601 - Ga0059261_1264 0.61 -1.4
1,330,601 - Ga0059261_1264 0.61 -1.2

Or see this region's nucleotide sequence