Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0346

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0345 and Ga0059261_0346 are separated by 205 nucleotidesGa0059261_0346 and Ga0059261_0347 overlap by 4 nucleotides Ga0059261_0345: Ga0059261_0345 - Predicted hydrolase of the alpha/beta superfamily, at 333,078 to 333,986 _0345 Ga0059261_0346: Ga0059261_0346 - DNA-binding winged-HTH domains, at 334,192 to 335,253 _0346 Ga0059261_0347: Ga0059261_0347 - CTP synthase (EC 6.3.4.2), at 335,250 to 336,887 _0347 Position (kb) 334 335 336Strain fitness (log2 ratio) -1 0 1 2 3at 333.201 kb on + strand, within Ga0059261_0345at 333.201 kb on + strand, within Ga0059261_0345at 333.202 kb on - strand, within Ga0059261_0345at 333.202 kb on - strand, within Ga0059261_0345at 333.254 kb on - strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.283 kb on + strand, within Ga0059261_0345at 333.284 kb on - strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.295 kb on + strand, within Ga0059261_0345at 333.296 kb on - strand, within Ga0059261_0345at 333.296 kb on - strandat 333.337 kb on + strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.338 kb on - strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.373 kb on + strand, within Ga0059261_0345at 333.374 kb on - strand, within Ga0059261_0345at 333.379 kb on - strand, within Ga0059261_0345at 333.401 kb on - strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.457 kb on + strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strandat 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.458 kb on - strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.611 kb on + strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strand, within Ga0059261_0345at 333.612 kb on - strandat 333.612 kb on - strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.613 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.742 kb on + strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strandat 333.743 kb on - strand, within Ga0059261_0345at 333.743 kb on - strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.760 kb on + strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.761 kb on - strand, within Ga0059261_0345at 333.797 kb on - strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.826 kb on + strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.827 kb on - strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.883 kb on + strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.884 kb on - strand, within Ga0059261_0345at 333.978 kb on + strandat 334.049 kb on + strandat 334.080 kb on - strandat 334.191 kb on + strandat 334.191 kb on + strandat 334.192 kb on - strandat 334.192 kb on - strandat 334.192 kb on - strandat 334.192 kb on - strandat 334.289 kb on - strandat 334.371 kb on + strand, within Ga0059261_0346at 334.372 kb on - strand, within Ga0059261_0346at 334.372 kb on - strand, within Ga0059261_0346at 334.395 kb on + strand, within Ga0059261_0346at 334.395 kb on + strand, within Ga0059261_0346at 334.395 kb on + strand, within Ga0059261_0346at 334.395 kb on + strand, within Ga0059261_0346at 334.396 kb on - strand, within Ga0059261_0346at 334.396 kb on - strand, within Ga0059261_0346at 334.396 kb on - strand, within Ga0059261_0346at 334.396 kb on - strand, within Ga0059261_0346at 334.481 kb on - strand, within Ga0059261_0346at 334.633 kb on + strand, within Ga0059261_0346at 334.633 kb on + strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.634 kb on - strand, within Ga0059261_0346at 334.893 kb on + strand, within Ga0059261_0346at 334.893 kb on + strand, within Ga0059261_0346at 334.893 kb on + strand, within Ga0059261_0346at 334.893 kb on + strand, within Ga0059261_0346at 334.894 kb on - strand, within Ga0059261_0346at 334.894 kb on - strand, within Ga0059261_0346at 334.894 kb on - strand, within Ga0059261_0346at 334.894 kb on - strand, within Ga0059261_0346at 334.894 kb on - strand, within Ga0059261_0346at 335.251 kb on + strandat 335.251 kb on + strandat 335.251 kb on + strandat 335.252 kb on - strandat 335.252 kb on - strandat 335.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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333,201 + Ga0059261_0345 0.14 -0.9
333,201 + Ga0059261_0345 0.14 +0.3
333,202 - Ga0059261_0345 0.14 -0.6
333,202 - Ga0059261_0345 0.14 +0.1
333,254 - Ga0059261_0345 0.19 -0.9
333,283 + Ga0059261_0345 0.23 +0.5
333,283 + Ga0059261_0345 0.23 +0.5
333,283 + Ga0059261_0345 0.23 -0.1
333,283 + Ga0059261_0345 0.23 +0.3
333,283 + Ga0059261_0345 0.23 -1.7
333,284 - Ga0059261_0345 0.23 +0.2
333,295 + Ga0059261_0345 0.24 +0.1
333,295 + Ga0059261_0345 0.24 -0.2
333,295 + Ga0059261_0345 0.24 +0.5
333,295 + Ga0059261_0345 0.24 -0.2
333,295 + Ga0059261_0345 0.24 -0.1
333,296 - Ga0059261_0345 0.24 +0.4
333,296 - -0.4
333,337 + Ga0059261_0345 0.28 +0.0
333,338 - Ga0059261_0345 0.29 +0.3
333,338 - Ga0059261_0345 0.29 +0.7
333,338 - Ga0059261_0345 0.29 +1.4
333,373 + Ga0059261_0345 0.32 -0.4
333,373 + Ga0059261_0345 0.32 +1.1
333,373 + Ga0059261_0345 0.32 -0.0
333,373 + Ga0059261_0345 0.32 -0.6
333,374 - Ga0059261_0345 0.33 +0.3
333,379 - Ga0059261_0345 0.33 -0.1
333,401 - Ga0059261_0345 0.36 +0.5
333,457 + Ga0059261_0345 0.42 +1.9
333,457 + Ga0059261_0345 0.42 +0.3
333,457 + Ga0059261_0345 0.42 -0.0
333,457 + Ga0059261_0345 0.42 -0.4
333,457 + Ga0059261_0345 0.42 +0.7
333,457 + Ga0059261_0345 0.42 -0.5
333,457 + Ga0059261_0345 0.42 -0.4
333,457 + Ga0059261_0345 0.42 -0.3
333,457 + Ga0059261_0345 0.42 +0.3
333,458 - Ga0059261_0345 0.42 -0.4
333,458 - Ga0059261_0345 0.42 -1.0
333,458 - +0.1
333,458 - Ga0059261_0345 0.42 +1.1
333,458 - Ga0059261_0345 0.42 -0.0
333,458 - Ga0059261_0345 0.42 -0.5
333,458 - Ga0059261_0345 0.42 +0.3
333,611 + Ga0059261_0345 0.59 -0.5
333,611 + Ga0059261_0345 0.59 +0.9
333,611 + Ga0059261_0345 0.59 -1.4
333,611 + Ga0059261_0345 0.59 +0.6
333,612 - Ga0059261_0345 0.59 +1.4
333,612 - Ga0059261_0345 0.59 -0.6
333,612 - Ga0059261_0345 0.59 -0.2
333,612 - +2.1
333,612 - Ga0059261_0345 0.59 +0.2
333,613 + Ga0059261_0345 0.59 +1.0
333,613 + Ga0059261_0345 0.59 +0.3
333,613 + Ga0059261_0345 0.59 +0.9
333,742 + Ga0059261_0345 0.73 -0.2
333,742 + Ga0059261_0345 0.73 -0.1
333,742 + Ga0059261_0345 0.73 +0.2
333,743 - Ga0059261_0345 0.73 -0.8
333,743 - Ga0059261_0345 0.73 -0.2
333,743 - +1.1
333,743 - Ga0059261_0345 0.73 +0.7
333,743 - Ga0059261_0345 0.73 -0.4
333,760 + Ga0059261_0345 0.75 +0.7
333,760 + Ga0059261_0345 0.75 -0.3
333,760 + Ga0059261_0345 0.75 -0.4
333,760 + Ga0059261_0345 0.75 -0.9
333,760 + Ga0059261_0345 0.75 +0.1
333,760 + Ga0059261_0345 0.75 -0.8
333,760 + Ga0059261_0345 0.75 -0.5
333,760 + Ga0059261_0345 0.75 +0.4
333,761 - Ga0059261_0345 0.75 +0.5
333,761 - Ga0059261_0345 0.75 +0.2
333,761 - Ga0059261_0345 0.75 -0.1
333,761 - Ga0059261_0345 0.75 -0.2
333,761 - Ga0059261_0345 0.75 +0.7
333,761 - Ga0059261_0345 0.75 +0.1
333,761 - Ga0059261_0345 0.75 +0.8
333,761 - Ga0059261_0345 0.75 +0.5
333,761 - Ga0059261_0345 0.75 -0.2
333,761 - Ga0059261_0345 0.75 -1.6
333,761 - Ga0059261_0345 0.75 -0.9
333,761 - Ga0059261_0345 0.75 -0.7
333,761 - Ga0059261_0345 0.75 +0.0
333,761 - Ga0059261_0345 0.75 -0.1
333,761 - Ga0059261_0345 0.75 -0.4
333,761 - Ga0059261_0345 0.75 +0.6
333,761 - Ga0059261_0345 0.75 -0.1
333,797 - Ga0059261_0345 0.79 +0.4
333,826 + Ga0059261_0345 0.82 +0.1
333,826 + Ga0059261_0345 0.82 +0.0
333,826 + Ga0059261_0345 0.82 +0.3
333,827 - Ga0059261_0345 0.82 -0.1
333,827 - Ga0059261_0345 0.82 -0.5
333,827 - Ga0059261_0345 0.82 +0.2
333,883 + Ga0059261_0345 0.89 -0.5
333,883 + Ga0059261_0345 0.89 +0.2
333,883 + Ga0059261_0345 0.89 -0.3
333,883 + Ga0059261_0345 0.89 -1.0
333,883 + Ga0059261_0345 0.89 +0.1
333,884 - Ga0059261_0345 0.89 +0.2
333,884 - Ga0059261_0345 0.89 +0.3
333,884 - Ga0059261_0345 0.89 +0.5
333,884 - Ga0059261_0345 0.89 -0.6
333,978 + +0.3
334,049 + -0.1
334,080 - -0.2
334,191 + +0.8
334,191 + -0.1
334,192 - +0.7
334,192 - -0.2
334,192 - +0.9
334,192 - +0.8
334,289 - +0.6
334,371 + Ga0059261_0346 0.17 +0.4
334,372 - Ga0059261_0346 0.17 -0.1
334,372 - Ga0059261_0346 0.17 +0.4
334,395 + Ga0059261_0346 0.19 +0.1
334,395 + Ga0059261_0346 0.19 +0.4
334,395 + Ga0059261_0346 0.19 +0.2
334,395 + Ga0059261_0346 0.19 +0.2
334,396 - Ga0059261_0346 0.19 -0.2
334,396 - Ga0059261_0346 0.19 -0.4
334,396 - Ga0059261_0346 0.19 +0.7
334,396 - Ga0059261_0346 0.19 +0.8
334,481 - Ga0059261_0346 0.27 +0.4
334,633 + Ga0059261_0346 0.42 +0.5
334,633 + Ga0059261_0346 0.42 +0.2
334,634 - Ga0059261_0346 0.42 -0.1
334,634 - Ga0059261_0346 0.42 -0.4
334,634 - Ga0059261_0346 0.42 -0.1
334,634 - Ga0059261_0346 0.42 -0.0
334,634 - Ga0059261_0346 0.42 +0.6
334,634 - Ga0059261_0346 0.42 -0.2
334,893 + Ga0059261_0346 0.66 +2.5
334,893 + Ga0059261_0346 0.66 -0.4
334,893 + Ga0059261_0346 0.66 +0.8
334,893 + Ga0059261_0346 0.66 -0.1
334,894 - Ga0059261_0346 0.66 +0.0
334,894 - Ga0059261_0346 0.66 -0.2
334,894 - Ga0059261_0346 0.66 +0.2
334,894 - Ga0059261_0346 0.66 -0.3
334,894 - Ga0059261_0346 0.66 +0.0
335,251 + +0.5
335,251 + +0.2
335,251 + -0.2
335,252 - -0.1
335,252 - -0.1
335,252 - +3.1

Or see this region's nucleotide sequence