Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0045

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0043 and Ga0059261_0044 overlap by 11 nucleotidesGa0059261_0044 and Ga0059261_0045 are separated by 41 nucleotidesGa0059261_0045 and Ga0059261_0046 are separated by 254 nucleotidesGa0059261_0046 and Ga0059261_0047 are separated by 143 nucleotides Ga0059261_0043: Ga0059261_0043 - Histidine kinase/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, at 37,340 to 38,452 _0043 Ga0059261_0044: Ga0059261_0044 - two component transcriptional regulator, LytTR family, at 38,442 to 39,182 _0044 Ga0059261_0045: Ga0059261_0045 - hypothetical protein, at 39,224 to 39,559 _0045 Ga0059261_0046: Ga0059261_0046 - hypothetical protein, at 39,814 to 40,041 _0046 Ga0059261_0047: Ga0059261_0047 - Predicted aminopeptidases, at 40,185 to 41,543 _0047 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 38.252 kb on - strand, within Ga0059261_0043at 38.272 kb on - strand, within Ga0059261_0043at 38.272 kb on - strand, within Ga0059261_0043at 38.328 kb on + strand, within Ga0059261_0043at 38.328 kb on + strand, within Ga0059261_0043at 38.337 kb on + strand, within Ga0059261_0043at 38.337 kb on + strand, within Ga0059261_0043at 38.338 kb on - strand, within Ga0059261_0043at 38.338 kb on - strand, within Ga0059261_0043at 38.338 kb on - strand, within Ga0059261_0043at 38.440 kb on + strandat 38.440 kb on + strandat 38.441 kb on - strandat 38.441 kb on - strandat 38.441 kb on - strandat 38.462 kb on + strandat 38.462 kb on + strandat 38.463 kb on - strandat 38.463 kb on - strandat 38.660 kb on - strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.748 kb on + strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.749 kb on - strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.940 kb on + strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.941 kb on - strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.942 kb on + strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.943 kb on - strand, within Ga0059261_0044at 38.970 kb on + strand, within Ga0059261_0044at 38.970 kb on + strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strandat 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 38.971 kb on - strand, within Ga0059261_0044at 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.147 kb on + strandat 39.148 kb on - strandat 39.148 kb on - strandat 39.148 kb on - strandat 39.180 kb on + strandat 39.180 kb on + strandat 39.181 kb on - strandat 39.181 kb on - strandat 39.233 kb on + strandat 39.233 kb on + strandat 39.233 kb on + strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.234 kb on - strandat 39.247 kb on + strandat 39.247 kb on + strandat 39.247 kb on + strandat 39.248 kb on - strandat 39.322 kb on + strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.463 kb on - strand, within Ga0059261_0045at 39.611 kb on + strandat 39.611 kb on + strandat 39.611 kb on + strandat 39.611 kb on + strandat 39.612 kb on - strandat 39.612 kb on - strandat 39.635 kb on - strandat 39.648 kb on - strandat 39.648 kb on - strandat 39.648 kb on - strandat 39.730 kb on - strandat 40.321 kb on + strand, within Ga0059261_0047

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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38,252 - Ga0059261_0043 0.82 -0.2
38,272 - Ga0059261_0043 0.84 -0.4
38,272 - Ga0059261_0043 0.84 -1.8
38,328 + Ga0059261_0043 0.89 +0.3
38,328 + Ga0059261_0043 0.89 -1.1
38,337 + Ga0059261_0043 0.90 +0.0
38,337 + Ga0059261_0043 0.90 -0.8
38,338 - Ga0059261_0043 0.90 -0.2
38,338 - Ga0059261_0043 0.90 +0.7
38,338 - Ga0059261_0043 0.90 +0.1
38,440 + +2.3
38,440 + -0.4
38,441 - +0.0
38,441 - +0.2
38,441 - +0.0
38,462 + -0.1
38,462 + +0.0
38,463 - +0.3
38,463 - -1.2
38,660 - Ga0059261_0044 0.29 +1.3
38,748 + Ga0059261_0044 0.41 -0.0
38,748 + Ga0059261_0044 0.41 -0.2
38,748 + Ga0059261_0044 0.41 -0.7
38,748 + Ga0059261_0044 0.41 +0.2
38,748 + Ga0059261_0044 0.41 -0.3
38,748 + Ga0059261_0044 0.41 +0.2
38,748 + Ga0059261_0044 0.41 +0.1
38,748 + Ga0059261_0044 0.41 +0.6
38,748 + Ga0059261_0044 0.41 +0.8
38,748 + Ga0059261_0044 0.41 +1.3
38,748 + Ga0059261_0044 0.41 +0.1
38,748 + Ga0059261_0044 0.41 +0.8
38,749 - Ga0059261_0044 0.41 +0.1
38,749 - Ga0059261_0044 0.41 +0.3
38,749 - Ga0059261_0044 0.41 -0.3
38,749 - Ga0059261_0044 0.41 +0.5
38,749 - Ga0059261_0044 0.41 +0.7
38,749 - Ga0059261_0044 0.41 -0.0
38,749 - Ga0059261_0044 0.41 -0.1
38,749 - Ga0059261_0044 0.41 -0.2
38,749 - Ga0059261_0044 0.41 +0.6
38,749 - Ga0059261_0044 0.41 -0.4
38,940 + Ga0059261_0044 0.67 -0.8
38,940 + Ga0059261_0044 0.67 -0.6
38,940 + Ga0059261_0044 0.67 +0.9
38,940 + Ga0059261_0044 0.67 -1.1
38,940 + Ga0059261_0044 0.67 -0.3
38,940 + Ga0059261_0044 0.67 +0.2
38,940 + Ga0059261_0044 0.67 +0.1
38,940 + Ga0059261_0044 0.67 -1.0
38,940 + Ga0059261_0044 0.67 -0.0
38,940 + Ga0059261_0044 0.67 -0.0
38,941 - Ga0059261_0044 0.67 +0.5
38,941 - Ga0059261_0044 0.67 +0.6
38,941 - Ga0059261_0044 0.67 +0.0
38,941 - Ga0059261_0044 0.67 -0.4
38,941 - Ga0059261_0044 0.67 +0.5
38,941 - Ga0059261_0044 0.67 -0.4
38,941 - Ga0059261_0044 0.67 -0.1
38,941 - Ga0059261_0044 0.67 -1.2
38,942 + Ga0059261_0044 0.67 -0.2
38,942 + Ga0059261_0044 0.67 -0.7
38,942 + Ga0059261_0044 0.67 +0.1
38,942 + Ga0059261_0044 0.67 -0.3
38,942 + Ga0059261_0044 0.67 -0.8
38,943 - Ga0059261_0044 0.68 +0.1
38,943 - Ga0059261_0044 0.68 -0.6
38,943 - Ga0059261_0044 0.68 +0.1
38,943 - Ga0059261_0044 0.68 +0.1
38,943 - Ga0059261_0044 0.68 +0.1
38,970 + Ga0059261_0044 0.71 -0.5
38,970 + Ga0059261_0044 0.71 -0.3
38,971 - Ga0059261_0044 0.71 +0.4
38,971 - Ga0059261_0044 0.71 +0.4
38,971 - +0.0
38,971 - Ga0059261_0044 0.71 -1.6
38,971 - Ga0059261_0044 0.71 +1.0
38,971 - Ga0059261_0044 0.71 +1.2
39,147 + +0.2
39,147 + -0.4
39,147 + -0.0
39,147 + +0.8
39,147 + -0.1
39,147 + -0.6
39,148 - -0.1
39,148 - +0.2
39,148 - -0.0
39,180 + -0.8
39,180 + +0.6
39,181 - -0.9
39,181 - -0.8
39,233 + -0.3
39,233 + +0.5
39,233 + +1.4
39,234 - +0.1
39,234 - +0.3
39,234 - -0.1
39,234 - -0.1
39,234 - -0.0
39,234 - -0.4
39,234 - -0.0
39,234 - +0.6
39,234 - -0.5
39,234 - +0.1
39,234 - +0.5
39,247 + +0.0
39,247 + +0.2
39,247 + +1.0
39,248 - -0.1
39,322 + Ga0059261_0045 0.29 +0.1
39,463 - Ga0059261_0045 0.71 +1.0
39,463 - Ga0059261_0045 0.71 +0.2
39,463 - Ga0059261_0045 0.71 +1.1
39,611 + +0.2
39,611 + -0.3
39,611 + +1.3
39,611 + -0.5
39,612 - -0.6
39,612 - +0.1
39,635 - -0.4
39,648 - +0.3
39,648 - +0.1
39,648 - +0.3
39,730 - -0.2
40,321 + Ga0059261_0047 0.10 -1.0

Or see this region's nucleotide sequence