Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03781

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03780 and CCNA_03781 are separated by 170 nucleotidesCCNA_03781 and CCNA_03782 are separated by 183 nucleotidesCCNA_03782 and CCNA_03783 overlap by 4 nucleotides CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149 _03780 CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007 _03781 CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805 _03782 CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467 _03783 Position (kb) 3947 3948 3949 3950 3951Strain fitness (log2 ratio) -2 -1 0 1 2at 3946.338 kb on - strandat 3946.346 kb on - strandat 3946.368 kb on + strandat 3946.372 kb on + strandat 3946.375 kb on + strandat 3946.383 kb on - strandat 3946.390 kb on + strandat 3946.398 kb on - strandat 3946.434 kb on + strandat 3947.139 kb on + strandat 3947.147 kb on - strandat 3947.301 kb on - strandat 3947.327 kb on + strandat 3947.335 kb on - strandat 3947.335 kb on - strandat 3947.335 kb on - strandat 3950.024 kb on - strandat 3950.034 kb on - strandat 3950.034 kb on - strandat 3950.111 kb on - strandat 3950.181 kb on + strandat 3950.500 kb on + strand, within CCNA_03782at 3950.500 kb on + strand, within CCNA_03782at 3950.570 kb on + strand, within CCNA_03782at 3950.586 kb on + strand, within CCNA_03782at 3950.614 kb on + strand, within CCNA_03782at 3950.617 kb on - strand, within CCNA_03782at 3950.636 kb on + strand, within CCNA_03782at 3950.636 kb on + strand, within CCNA_03782at 3950.686 kb on + strand, within CCNA_03782at 3950.698 kb on + strand, within CCNA_03782at 3950.736 kb on + strand, within CCNA_03782at 3950.786 kb on + strandat 3950.794 kb on - strandat 3950.838 kb on + strandat 3950.906 kb on - strand, within CCNA_03783at 3950.911 kb on - strand, within CCNA_03783at 3950.931 kb on + strand, within CCNA_03783at 3950.939 kb on - strand, within CCNA_03783at 3950.973 kb on + strand, within CCNA_03783at 3950.976 kb on - strand, within CCNA_03783

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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3,946,338 - +1.0
3,946,346 - +0.7
3,946,368 + -0.3
3,946,372 + +0.1
3,946,375 + +0.4
3,946,383 - +0.2
3,946,390 + -0.5
3,946,398 - +1.0
3,946,434 + -1.0
3,947,139 + +0.1
3,947,147 - +1.5
3,947,301 - +1.8
3,947,327 + -1.5
3,947,335 - +1.7
3,947,335 - +1.5
3,947,335 - +2.1
3,950,024 - +0.3
3,950,034 - -1.2
3,950,034 - +0.5
3,950,111 - -0.5
3,950,181 + +0.3
3,950,500 + CCNA_03782 0.50 -1.1
3,950,500 + CCNA_03782 0.50 -1.2
3,950,570 + CCNA_03782 0.62 -0.5
3,950,586 + CCNA_03782 0.64 -0.4
3,950,614 + CCNA_03782 0.69 -0.1
3,950,617 - CCNA_03782 0.69 -1.2
3,950,636 + CCNA_03782 0.72 -0.7
3,950,636 + CCNA_03782 0.72 -0.1
3,950,686 + CCNA_03782 0.80 -1.1
3,950,698 + CCNA_03782 0.82 -0.2
3,950,736 + CCNA_03782 0.89 +0.2
3,950,786 + -0.9
3,950,794 - -1.1
3,950,838 + -1.5
3,950,906 - CCNA_03783 0.16 -1.5
3,950,911 - CCNA_03783 0.16 -0.6
3,950,931 + CCNA_03783 0.19 +0.0
3,950,939 - CCNA_03783 0.21 +0.4
3,950,973 + CCNA_03783 0.26 -1.9
3,950,976 - CCNA_03783 0.26 -0.6

Or see this region's nucleotide sequence