Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03780 and CCNA_03781 are separated by 170 nucleotides CCNA_03781 and CCNA_03782 are separated by 183 nucleotides CCNA_03782 and CCNA_03783 overlap by 4 nucleotides
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
CCNA_03782: CCNA_03782 - cytochrome c biogenesis ATP-binding export protein CcmA, at 3,950,191 to 3,950,805
_03782
CCNA_03783: CCNA_03783 - cytochrome c biogenesis ABC transporter permease component CcmB, at 3,950,802 to 3,951,467
_03783
Position (kb)
3947
3948
3949
3950
3951 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3946.338 kb on - strand at 3946.346 kb on - strand at 3946.368 kb on + strand at 3946.372 kb on + strand at 3946.375 kb on + strand at 3946.383 kb on - strand at 3946.390 kb on + strand at 3946.398 kb on - strand at 3946.434 kb on + strand at 3947.139 kb on + strand at 3947.147 kb on - strand at 3947.301 kb on - strand at 3947.327 kb on + strand at 3947.335 kb on - strand at 3947.335 kb on - strand at 3947.335 kb on - strand at 3950.024 kb on - strand at 3950.034 kb on - strand at 3950.034 kb on - strand at 3950.111 kb on - strand at 3950.181 kb on + strand at 3950.500 kb on + strand, within CCNA_03782 at 3950.500 kb on + strand, within CCNA_03782 at 3950.570 kb on + strand, within CCNA_03782 at 3950.586 kb on + strand, within CCNA_03782 at 3950.614 kb on + strand, within CCNA_03782 at 3950.617 kb on - strand, within CCNA_03782 at 3950.636 kb on + strand, within CCNA_03782 at 3950.636 kb on + strand, within CCNA_03782 at 3950.686 kb on + strand, within CCNA_03782 at 3950.698 kb on + strand, within CCNA_03782 at 3950.736 kb on + strand, within CCNA_03782 at 3950.786 kb on + strand at 3950.794 kb on - strand at 3950.838 kb on + strand at 3950.906 kb on - strand, within CCNA_03783 at 3950.911 kb on - strand, within CCNA_03783 at 3950.931 kb on + strand, within CCNA_03783 at 3950.939 kb on - strand, within CCNA_03783 at 3950.973 kb on + strand, within CCNA_03783 at 3950.976 kb on - strand, within CCNA_03783
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 3,946,338 - +1.0 3,946,346 - +0.7 3,946,368 + -0.3 3,946,372 + +0.1 3,946,375 + +0.4 3,946,383 - +0.2 3,946,390 + -0.5 3,946,398 - +1.0 3,946,434 + -1.0 3,947,139 + +0.1 3,947,147 - +1.5 3,947,301 - +1.8 3,947,327 + -1.5 3,947,335 - +1.7 3,947,335 - +1.5 3,947,335 - +2.1 3,950,024 - +0.3 3,950,034 - -1.2 3,950,034 - +0.5 3,950,111 - -0.5 3,950,181 + +0.3 3,950,500 + CCNA_03782 0.50 -1.1 3,950,500 + CCNA_03782 0.50 -1.2 3,950,570 + CCNA_03782 0.62 -0.5 3,950,586 + CCNA_03782 0.64 -0.4 3,950,614 + CCNA_03782 0.69 -0.1 3,950,617 - CCNA_03782 0.69 -1.2 3,950,636 + CCNA_03782 0.72 -0.7 3,950,636 + CCNA_03782 0.72 -0.1 3,950,686 + CCNA_03782 0.80 -1.1 3,950,698 + CCNA_03782 0.82 -0.2 3,950,736 + CCNA_03782 0.89 +0.2 3,950,786 + -0.9 3,950,794 - -1.1 3,950,838 + -1.5 3,950,906 - CCNA_03783 0.16 -1.5 3,950,911 - CCNA_03783 0.16 -0.6 3,950,931 + CCNA_03783 0.19 +0.0 3,950,939 - CCNA_03783 0.21 +0.4 3,950,973 + CCNA_03783 0.26 -1.9 3,950,976 - CCNA_03783 0.26 -0.6
Or see this region's nucleotide sequence