Experiment: PYE with Paraquat dichloride 0.015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03778 and CCNA_03779 are separated by 84 nucleotides CCNA_03779 and CCNA_03780 are separated by 528 nucleotides CCNA_03780 and CCNA_03781 are separated by 170 nucleotides
CCNA_03778: CCNA_03778 - integral membrane protein, at 3,944,717 to 3,945,469
_03778
CCNA_03779: CCNA_03779 - hypothetical protein, at 3,945,554 to 3,945,886
_03779
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
Position (kb)
3946
3947
3948 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3945.417 kb on + strand at 3945.497 kb on + strand at 3945.596 kb on + strand, within CCNA_03779 at 3945.597 kb on + strand, within CCNA_03779 at 3945.597 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.626 kb on + strand, within CCNA_03779 at 3945.648 kb on - strand, within CCNA_03779 at 3945.744 kb on - strand, within CCNA_03779 at 3945.746 kb on + strand, within CCNA_03779 at 3945.867 kb on + strand at 3945.867 kb on + strand at 3945.867 kb on + strand at 3945.867 kb on + strand at 3945.867 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on - strand at 3945.875 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.884 kb on - strand at 3945.975 kb on - strand at 3945.989 kb on + strand at 3946.001 kb on + strand at 3946.025 kb on + strand at 3946.038 kb on - strand at 3946.058 kb on + strand at 3946.067 kb on + strand at 3946.067 kb on + strand at 3946.097 kb on - strand at 3946.119 kb on + strand at 3946.119 kb on + strand at 3946.119 kb on + strand at 3946.127 kb on - strand at 3946.127 kb on - strand at 3946.136 kb on + strand at 3946.146 kb on + strand at 3946.216 kb on - strand at 3946.242 kb on - strand at 3946.242 kb on - strand at 3946.306 kb on - strand at 3946.306 kb on - strand at 3946.306 kb on - strand at 3946.312 kb on + strand at 3946.338 kb on - strand at 3946.346 kb on - strand at 3946.368 kb on + strand at 3946.372 kb on + strand at 3946.375 kb on + strand at 3946.383 kb on - strand at 3946.390 kb on + strand at 3946.398 kb on - strand at 3946.434 kb on + strand at 3947.139 kb on + strand at 3947.147 kb on - strand at 3947.301 kb on - strand at 3947.327 kb on + strand at 3947.335 kb on - strand at 3947.335 kb on - strand at 3947.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml remove 3,945,417 + -2.7 3,945,497 + +0.8 3,945,596 + CCNA_03779 0.13 -3.3 3,945,597 + CCNA_03779 0.13 -0.1 3,945,597 + CCNA_03779 0.13 -0.0 3,945,607 + CCNA_03779 0.16 -1.0 3,945,615 - CCNA_03779 0.18 -0.4 3,945,615 - CCNA_03779 0.18 +0.4 3,945,626 + CCNA_03779 0.22 +0.0 3,945,648 - CCNA_03779 0.28 +0.6 3,945,744 - CCNA_03779 0.57 -0.5 3,945,746 + CCNA_03779 0.58 -0.1 3,945,867 + -0.4 3,945,867 + -0.1 3,945,867 + -1.4 3,945,867 + +0.8 3,945,867 + -0.0 3,945,875 + +0.3 3,945,875 + +0.2 3,945,875 + -0.9 3,945,875 + +1.9 3,945,875 + +1.4 3,945,875 + +0.1 3,945,875 - +0.2 3,945,875 - +0.6 3,945,883 - +0.2 3,945,883 - -2.8 3,945,883 - -0.7 3,945,883 - -2.9 3,945,883 - -0.4 3,945,884 - +0.8 3,945,975 - +0.1 3,945,989 + +1.6 3,946,001 + +0.7 3,946,025 + +1.1 3,946,038 - -1.4 3,946,058 + +1.3 3,946,067 + +1.7 3,946,067 + +1.0 3,946,097 - +0.1 3,946,119 + +1.4 3,946,119 + +0.8 3,946,119 + +0.8 3,946,127 - +0.8 3,946,127 - +0.1 3,946,136 + +1.2 3,946,146 + +1.0 3,946,216 - +0.3 3,946,242 - +0.4 3,946,242 - +0.9 3,946,306 - +1.7 3,946,306 - +0.1 3,946,306 - +0.8 3,946,312 + +1.0 3,946,338 - +1.0 3,946,346 - +0.7 3,946,368 + -0.3 3,946,372 + +0.1 3,946,375 + +0.4 3,946,383 - +0.2 3,946,390 + -0.5 3,946,398 - +1.0 3,946,434 + -1.0 3,947,139 + +0.1 3,947,147 - +1.5 3,947,301 - +1.8 3,947,327 + -1.5 3,947,335 - +1.7 3,947,335 - +1.5 3,947,335 - +2.1
Or see this region's nucleotide sequence