Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03780

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03778 and CCNA_03779 are separated by 84 nucleotidesCCNA_03779 and CCNA_03780 are separated by 528 nucleotidesCCNA_03780 and CCNA_03781 are separated by 170 nucleotides CCNA_03778: CCNA_03778 - integral membrane protein, at 3,944,717 to 3,945,469 _03778 CCNA_03779: CCNA_03779 - hypothetical protein, at 3,945,554 to 3,945,886 _03779 CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149 _03780 CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007 _03781 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3945.417 kb on + strandat 3945.497 kb on + strandat 3945.596 kb on + strand, within CCNA_03779at 3945.597 kb on + strand, within CCNA_03779at 3945.597 kb on + strand, within CCNA_03779at 3945.607 kb on + strand, within CCNA_03779at 3945.615 kb on - strand, within CCNA_03779at 3945.615 kb on - strand, within CCNA_03779at 3945.626 kb on + strand, within CCNA_03779at 3945.648 kb on - strand, within CCNA_03779at 3945.744 kb on - strand, within CCNA_03779at 3945.746 kb on + strand, within CCNA_03779at 3945.867 kb on + strandat 3945.867 kb on + strandat 3945.867 kb on + strandat 3945.867 kb on + strandat 3945.867 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on + strandat 3945.875 kb on - strandat 3945.875 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.883 kb on - strandat 3945.884 kb on - strandat 3945.975 kb on - strandat 3945.989 kb on + strandat 3946.001 kb on + strandat 3946.025 kb on + strandat 3946.038 kb on - strandat 3946.058 kb on + strandat 3946.067 kb on + strandat 3946.067 kb on + strandat 3946.097 kb on - strandat 3946.119 kb on + strandat 3946.119 kb on + strandat 3946.119 kb on + strandat 3946.127 kb on - strandat 3946.127 kb on - strandat 3946.136 kb on + strandat 3946.146 kb on + strandat 3946.216 kb on - strandat 3946.242 kb on - strandat 3946.242 kb on - strandat 3946.306 kb on - strandat 3946.306 kb on - strandat 3946.306 kb on - strandat 3946.312 kb on + strandat 3946.338 kb on - strandat 3946.346 kb on - strandat 3946.368 kb on + strandat 3946.372 kb on + strandat 3946.375 kb on + strandat 3946.383 kb on - strandat 3946.390 kb on + strandat 3946.398 kb on - strandat 3946.434 kb on + strandat 3947.139 kb on + strandat 3947.147 kb on - strandat 3947.301 kb on - strandat 3947.327 kb on + strandat 3947.335 kb on - strandat 3947.335 kb on - strandat 3947.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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3,945,417 + -2.7
3,945,497 + +0.8
3,945,596 + CCNA_03779 0.13 -3.3
3,945,597 + CCNA_03779 0.13 -0.1
3,945,597 + CCNA_03779 0.13 -0.0
3,945,607 + CCNA_03779 0.16 -1.0
3,945,615 - CCNA_03779 0.18 -0.4
3,945,615 - CCNA_03779 0.18 +0.4
3,945,626 + CCNA_03779 0.22 +0.0
3,945,648 - CCNA_03779 0.28 +0.6
3,945,744 - CCNA_03779 0.57 -0.5
3,945,746 + CCNA_03779 0.58 -0.1
3,945,867 + -0.4
3,945,867 + -0.1
3,945,867 + -1.4
3,945,867 + +0.8
3,945,867 + -0.0
3,945,875 + +0.3
3,945,875 + +0.2
3,945,875 + -0.9
3,945,875 + +1.9
3,945,875 + +1.4
3,945,875 + +0.1
3,945,875 - +0.2
3,945,875 - +0.6
3,945,883 - +0.2
3,945,883 - -2.8
3,945,883 - -0.7
3,945,883 - -2.9
3,945,883 - -0.4
3,945,884 - +0.8
3,945,975 - +0.1
3,945,989 + +1.6
3,946,001 + +0.7
3,946,025 + +1.1
3,946,038 - -1.4
3,946,058 + +1.3
3,946,067 + +1.7
3,946,067 + +1.0
3,946,097 - +0.1
3,946,119 + +1.4
3,946,119 + +0.8
3,946,119 + +0.8
3,946,127 - +0.8
3,946,127 - +0.1
3,946,136 + +1.2
3,946,146 + +1.0
3,946,216 - +0.3
3,946,242 - +0.4
3,946,242 - +0.9
3,946,306 - +1.7
3,946,306 - +0.1
3,946,306 - +0.8
3,946,312 + +1.0
3,946,338 - +1.0
3,946,346 - +0.7
3,946,368 + -0.3
3,946,372 + +0.1
3,946,375 + +0.4
3,946,383 - +0.2
3,946,390 + -0.5
3,946,398 - +1.0
3,946,434 + -1.0
3,947,139 + +0.1
3,947,147 - +1.5
3,947,301 - +1.8
3,947,327 + -1.5
3,947,335 - +1.7
3,947,335 - +1.5
3,947,335 - +2.1

Or see this region's nucleotide sequence