Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03245

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Paraquat dichloride 0.015 mg/ml
3,410,059	+		CCNA_03243	0.89	-0.2
3,410,067	-		CCNA_03243	0.90	-0.4
3,410,107	-				+0.2
3,410,107	-				-1.0
3,410,111	-				-0.4
3,410,133	-				-0.5
3,410,150	+				+0.0
3,410,163	-				+0.6
3,410,173	-				-1.3
3,410,181	+				-2.1
3,410,192	+				-1.5
3,410,204	+				-0.8
3,410,205	+				+0.3
3,410,214	+				-0.1
3,410,222	-				+2.3
3,410,261	+				-2.4
3,410,261	+				+0.2
3,410,316	-				-1.3
3,410,365	+		CCNA_03244	0.13	-1.3
3,410,374	-		CCNA_03244	0.15	-0.4
3,410,428	+		CCNA_03244	0.23	-2.9
3,410,463	+		CCNA_03244	0.28	-2.2
3,410,525	-		CCNA_03244	0.37	-0.7
3,410,558	+		CCNA_03244	0.42	-1.5
3,410,566	-		CCNA_03244	0.43	+0.4
3,410,599	+		CCNA_03244	0.48	-2.6
3,410,599	+		CCNA_03244	0.48	-1.7
3,410,600	+		CCNA_03244	0.48	-2.5
3,410,600	+		CCNA_03244	0.48	-1.3
3,410,600	+		CCNA_03244	0.48	-0.3
3,410,600	+		CCNA_03244	0.48	-0.7
3,410,600	+		CCNA_03244	0.48	-0.7
3,410,607	-		CCNA_03244	0.49	-0.2
3,410,608	-		CCNA_03244	0.50	+0.2
3,410,655	+		CCNA_03244	0.57	+0.8
3,410,655	+		CCNA_03244	0.57	-0.1
3,410,663	-		CCNA_03244	0.58	+0.5
3,410,663	-		CCNA_03244	0.58	+0.2
3,410,663	-		CCNA_03244	0.58	-1.1
3,410,666	+		CCNA_03244	0.58	+0.3
3,410,666	+		CCNA_03244	0.58	-1.1
3,410,666	+		CCNA_03244	0.58	-1.1
3,410,666	+		CCNA_03244	0.58	-1.7
3,410,666	+		CCNA_03244	0.58	+0.0
3,410,666	+		CCNA_03244	0.58	+0.3
3,410,666	+		CCNA_03244	0.58	+0.5
3,410,666	+		CCNA_03244	0.58	-0.2
3,410,666	+		CCNA_03244	0.58	-1.6
3,410,666	+		CCNA_03244	0.58	-1.4
3,410,666	+		CCNA_03244	0.58	-0.7
3,410,666	+		CCNA_03244	0.58	+0.5
3,410,666	+		CCNA_03244	0.58	+1.3
3,410,674	-		CCNA_03244	0.59	-1.3
3,410,674	-		CCNA_03244	0.59	-0.1
3,410,674	-		CCNA_03244	0.59	-1.2
3,410,674	-		CCNA_03244	0.59	+1.2
3,410,674	-		CCNA_03244	0.59	-1.5
3,410,674	-		CCNA_03244	0.59	-0.1
3,410,674	-		CCNA_03244	0.59	+1.2
3,410,681	+		CCNA_03244	0.60	-1.1
3,410,681	+		CCNA_03244	0.60	-1.9
3,410,699	-		CCNA_03244	0.63	+0.0
3,410,749	-		CCNA_03244	0.71	+0.6
3,410,763	-		CCNA_03244	0.73	-0.3
3,410,848	+		CCNA_03244	0.85	-1.3
3,410,857	+		CCNA_03244	0.87	-0.4
3,410,869	+		CCNA_03244	0.88	-3.3
3,410,912	+				+1.8
3,410,912	+				-1.0
3,410,920	-				-0.7
3,410,947	-				-1.8
3,411,020	+				-1.4
3,411,028	-				-1.3
3,411,064	-				-1.0
3,411,107	+				-1.6
3,411,131	+				-0.6
3,411,141	+				-0.7
3,411,141	+				-1.1
3,411,141	+				-1.5
3,411,149	-		CCNA_03245	0.10	-1.2
3,411,149	-		CCNA_03245	0.10	-0.3
3,411,156	+		CCNA_03245	0.11	-1.1
3,411,164	-		CCNA_03245	0.11	-1.7
3,411,164	-		CCNA_03245	0.11	-1.6
3,411,174	+		CCNA_03245	0.12	+0.6
3,411,174	+		CCNA_03245	0.12	-2.0
3,411,174	+		CCNA_03245	0.12	+0.3
3,411,176	+		CCNA_03245	0.12	+1.3
3,411,233	-		CCNA_03245	0.16	-0.6
3,411,262	+		CCNA_03245	0.19	-1.4
3,411,262	+		CCNA_03245	0.19	-0.9
3,411,278	+				+1.3
3,411,317	-		CCNA_03245	0.23	+0.3
3,411,368	+		CCNA_03245	0.27	-2.3
3,411,378	+		CCNA_03245	0.27	+0.8
3,411,380	+		CCNA_03245	0.27	+0.6
3,411,386	-		CCNA_03245	0.28	-2.1
3,411,386	-		CCNA_03245	0.28	-1.1
3,411,386	-		CCNA_03245	0.28	-1.4
3,411,512	+		CCNA_03245	0.37	-0.2
3,411,556	+		CCNA_03245	0.41	-1.1
3,411,556	-		CCNA_03245	0.41	-0.5
3,411,564	-		CCNA_03245	0.41	-1.1
3,411,564	-		CCNA_03245	0.41	+1.3
3,411,564	-		CCNA_03245	0.41	-0.2
3,411,564	-		CCNA_03245	0.41	-1.7
3,411,575	+		CCNA_03245	0.42	-0.2
3,411,594	+		CCNA_03245	0.44	-0.5
3,411,594	+		CCNA_03245	0.44	-0.4
3,411,602	-		CCNA_03245	0.44	-1.2
3,411,602	-		CCNA_03245	0.44	-0.3
3,411,629	-		CCNA_03245	0.46	-0.5
3,411,727	-		CCNA_03245	0.54	-1.4
3,411,801	-		CCNA_03245	0.59	-0.7
3,411,801	-		CCNA_03245	0.59	-2.2
3,411,803	+		CCNA_03245	0.59	-1.2
3,411,803	+		CCNA_03245	0.59	-0.1
3,411,811	-		CCNA_03245	0.60	-0.5
3,411,811	-		CCNA_03245	0.60	-0.7
3,411,830	-		CCNA_03245	0.61	+0.2
3,411,851	+		CCNA_03245	0.63	-1.9
3,411,859	-		CCNA_03245	0.64	-0.2
3,411,869	-		CCNA_03245	0.64	+1.3
3,411,872	+		CCNA_03245	0.64	-0.5
3,411,875	-				+0.5
3,411,880	-		CCNA_03245	0.65	+0.0
3,411,890	-		CCNA_03245	0.66	-0.2
3,411,917	+		CCNA_03245	0.68	-2.1
3,411,925	-		CCNA_03245	0.68	-2.3
3,411,930	+		CCNA_03245	0.69	+2.3
3,411,969	+		CCNA_03245	0.72	-1.7
3,411,970	+		CCNA_03245	0.72	-0.2
3,411,970	-		CCNA_03245	0.72	+1.3
3,412,038	+		CCNA_03245	0.77	-1.7
3,412,067	+		CCNA_03245	0.79	+1.2
3,412,089	+		CCNA_03245	0.81	+1.4
3,412,094	-		CCNA_03245	0.81	-1.1
3,412,097	-		CCNA_03245	0.81	-0.8
3,412,101	+		CCNA_03245	0.82	-0.6
3,412,113	-		CCNA_03245	0.83	-1.6
3,412,140	-		CCNA_03245	0.85	-0.1
3,412,156	+		CCNA_03245	0.86	-1.2
3,412,156	+		CCNA_03245	0.86	-1.1
3,412,156	+		CCNA_03245	0.86	-1.6
3,412,156	+		CCNA_03245	0.86	-0.5
3,412,156	+		CCNA_03245	0.86	+0.2
3,412,159	-		CCNA_03245	0.86	+0.0
3,412,164	-		CCNA_03245	0.86	-2.2
3,412,164	-		CCNA_03245	0.86	-1.6
3,412,164	-		CCNA_03245	0.86	+0.8
3,412,164	-		CCNA_03245	0.86	+0.8
3,412,185	-		CCNA_03245	0.88	+0.3
3,412,202	+		CCNA_03245	0.89	-0.9
3,412,221	-				+0.8
3,412,227	+				-1.0
3,412,232	-				+1.0
3,412,235	-				-0.5
3,412,235	-				-1.0
3,412,235	-				-1.0
3,412,286	+				-0.6
3,412,294	-				-0.4
3,412,312	-				+0.4
3,412,323	+				+1.8
3,412,346	-				-0.1
3,412,346	-				-0.8
3,412,348	+				-1.5
3,412,356	-				+0.1
3,412,376	-				-0.6
3,412,376	-				-0.8
3,412,390	-				-2.8
3,412,481	-		CCNA_03246	0.10	-1.1
3,412,498	-		CCNA_03246	0.12	+1.0
3,412,503	+		CCNA_03246	0.12	-2.6
3,412,555	-		CCNA_03246	0.17	+0.8
3,412,570	+		CCNA_03246	0.19	+0.6
3,412,586	+		CCNA_03246	0.20	+0.5
3,412,598	+		CCNA_03246	0.21	-0.7
3,412,615	+		CCNA_03246	0.23	+0.1
3,412,632	+		CCNA_03246	0.25	-0.9
3,412,633	-		CCNA_03246	0.25	-1.7
3,412,641	-		CCNA_03246	0.25	+0.1
3,412,647	-		CCNA_03246	0.26	-1.0
3,412,673	+		CCNA_03246	0.28	-0.2
3,412,678	+		CCNA_03246	0.29	-0.1
3,412,680	-		CCNA_03246	0.29	+1.3
3,412,680	-		CCNA_03246	0.29	-1.6
3,412,733	-		CCNA_03246	0.34	+0.2
3,412,733	-		CCNA_03246	0.34	-0.3
3,412,824	+		CCNA_03246	0.43	-0.8
3,412,829	+		CCNA_03246	0.43	-2.2
3,412,829	+		CCNA_03246	0.43	+0.0
3,412,832	-		CCNA_03246	0.43	-0.5
3,412,837	-		CCNA_03246	0.44	-1.9
3,412,874	+		CCNA_03246	0.47	+0.5
3,412,943	+		CCNA_03246	0.54	-0.1
3,412,951	+		CCNA_03246	0.54	-0.5
3,412,951	-		CCNA_03246	0.54	-1.4
3,412,951	-		CCNA_03246	0.54	+0.2
3,412,963	+		CCNA_03246	0.56	-0.7
3,412,978	-		CCNA_03246	0.57	-0.7
3,412,979	-		CCNA_03246	0.57	-2.6
3,412,997	-		CCNA_03246	0.59	+2.7
3,413,010	-		CCNA_03246	0.60	-0.0
3,413,062	+		CCNA_03246	0.65	-2.4
3,413,084	+				+1.3
3,413,092	-		CCNA_03246	0.68	-0.6
3,413,092	-		CCNA_03246	0.68	-0.2
3,413,092	-		CCNA_03246	0.68	-0.7
3,413,107	+		CCNA_03246	0.69	-0.1
3,413,115	-		CCNA_03246	0.70	+0.5
3,413,122	+		CCNA_03246	0.71	-0.6
3,413,163	+		CCNA_03246	0.74	-1.9
3,413,183	+		CCNA_03246	0.76	+0.4
3,413,198	-		CCNA_03246	0.78	-0.9
3,413,225	-		CCNA_03246	0.80	+1.8
3,413,249	-		CCNA_03246	0.82	+1.8
3,413,263	+		CCNA_03246	0.84	-1.0
3,413,277	+		CCNA_03246	0.85	-0.5
3,413,296	-		CCNA_03246	0.87	+0.4
3,413,303	+		CCNA_03246	0.88	-2.0
3,413,310	+		CCNA_03246	0.88	+0.5
3,413,311	-		CCNA_03246	0.88	-0.6
3,413,311	-		CCNA_03246	0.88	+0.3
3,413,331	+				-0.6
3,413,339	-				-0.9