Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01218

Experiment: PYE with Paraquat dichloride 0.015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01217 and CCNA_01218 overlap by 82 nucleotidesCCNA_01218 and CCNA_01219 overlap by 4 nucleotidesCCNA_01219 and CCNA_01220 are separated by 68 nucleotides CCNA_01217: CCNA_01217 - phosphatidylglycerophosphate synthase, at 1,343,532 to 1,344,659 _01217 CCNA_01218: CCNA_01218 - sphingosine kinase/diacylglycerol kinase-related protein, at 1,344,578 to 1,345,570 _01218 CCNA_01219: CCNA_01219 - putative cytosolic protein, at 1,345,567 to 1,346,448 _01219 CCNA_01220: CCNA_01220 - 7-keto-8-aminopelargonate synthetase, at 1,346,517 to 1,347,731 _01220 Position (kb) 1344 1345 1346Strain fitness (log2 ratio) -2 -1 0 1 2at 1343.627 kb on + strandat 1343.638 kb on + strandat 1343.649 kb on + strand, within CCNA_01217at 1343.688 kb on - strand, within CCNA_01217at 1343.754 kb on + strand, within CCNA_01217at 1343.754 kb on + strand, within CCNA_01217at 1343.762 kb on - strand, within CCNA_01217at 1343.807 kb on + strand, within CCNA_01217at 1343.854 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.937 kb on + strand, within CCNA_01217at 1343.973 kb on + strand, within CCNA_01217at 1343.973 kb on + strand, within CCNA_01217at 1343.987 kb on + strand, within CCNA_01217at 1343.987 kb on + strand, within CCNA_01217at 1344.027 kb on + strand, within CCNA_01217at 1344.062 kb on - strand, within CCNA_01217at 1344.143 kb on + strand, within CCNA_01217at 1344.156 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.173 kb on + strand, within CCNA_01217at 1344.178 kb on + strand, within CCNA_01217at 1344.178 kb on + strand, within CCNA_01217at 1344.207 kb on + strand, within CCNA_01217at 1344.229 kb on - strand, within CCNA_01217at 1344.231 kb on + strand, within CCNA_01217at 1344.241 kb on + strand, within CCNA_01217at 1344.361 kb on + strand, within CCNA_01217at 1344.397 kb on + strand, within CCNA_01217at 1344.425 kb on + strand, within CCNA_01217at 1344.488 kb on + strand, within CCNA_01217at 1344.540 kb on + strand, within CCNA_01217at 1344.542 kb on + strand, within CCNA_01217at 1344.573 kb on + strandat 1344.573 kb on + strandat 1344.573 kb on + strandat 1344.581 kb on - strandat 1344.636 kb on + strandat 1344.664 kb on + strandat 1344.664 kb on + strandat 1344.672 kb on - strandat 1344.672 kb on - strandat 1344.691 kb on - strand, within CCNA_01218at 1344.750 kb on - strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.915 kb on + strand, within CCNA_01218at 1345.056 kb on - strand, within CCNA_01218at 1345.101 kb on + strand, within CCNA_01218at 1345.109 kb on - strand, within CCNA_01218at 1345.151 kb on + strand, within CCNA_01218at 1345.216 kb on + strand, within CCNA_01218at 1345.243 kb on - strand, within CCNA_01218at 1345.255 kb on + strand, within CCNA_01218at 1345.258 kb on - strand, within CCNA_01218at 1345.348 kb on - strand, within CCNA_01218at 1345.375 kb on - strand, within CCNA_01218at 1345.381 kb on + strand, within CCNA_01218at 1345.389 kb on - strand, within CCNA_01218at 1345.446 kb on - strand, within CCNA_01218at 1345.518 kb on - strandat 1345.540 kb on + strandat 1345.541 kb on + strandat 1345.587 kb on + strandat 1345.610 kb on - strandat 1345.869 kb on + strand, within CCNA_01219at 1345.924 kb on + strand, within CCNA_01219at 1346.190 kb on - strand, within CCNA_01219at 1346.223 kb on + strand, within CCNA_01219at 1346.223 kb on + strand, within CCNA_01219at 1346.260 kb on + strand, within CCNA_01219at 1346.280 kb on + strand, within CCNA_01219at 1346.350 kb on - strand, within CCNA_01219at 1346.412 kb on + strandat 1346.418 kb on + strandat 1346.418 kb on + strandat 1346.418 kb on + strandat 1346.418 kb on + strandat 1346.418 kb on + strandat 1346.426 kb on - strandat 1346.426 kb on - strandat 1346.473 kb on + strandat 1346.515 kb on + strandat 1346.530 kb on + strandat 1346.550 kb on + strandat 1346.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Paraquat dichloride 0.015 mg/ml
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1,343,627 + -1.1
1,343,638 + +0.6
1,343,649 + CCNA_01217 0.10 -0.3
1,343,688 - CCNA_01217 0.14 -0.2
1,343,754 + CCNA_01217 0.20 -1.3
1,343,754 + CCNA_01217 0.20 -0.2
1,343,762 - CCNA_01217 0.20 -1.6
1,343,807 + CCNA_01217 0.24 +1.2
1,343,854 + CCNA_01217 0.29 -1.1
1,343,901 + CCNA_01217 0.33 +0.3
1,343,901 + CCNA_01217 0.33 -0.9
1,343,901 + CCNA_01217 0.33 -1.1
1,343,901 + CCNA_01217 0.33 -2.7
1,343,901 + CCNA_01217 0.33 -0.4
1,343,901 + CCNA_01217 0.33 -1.6
1,343,901 + CCNA_01217 0.33 -0.4
1,343,901 + CCNA_01217 0.33 -0.9
1,343,901 + CCNA_01217 0.33 +0.2
1,343,901 + CCNA_01217 0.33 -0.1
1,343,901 + CCNA_01217 0.33 -1.3
1,343,901 + CCNA_01217 0.33 -0.8
1,343,901 + CCNA_01217 0.33 +0.4
1,343,901 + CCNA_01217 0.33 -0.7
1,343,901 + CCNA_01217 0.33 -0.8
1,343,901 + CCNA_01217 0.33 -1.4
1,343,901 + CCNA_01217 0.33 +0.3
1,343,901 + CCNA_01217 0.33 -1.8
1,343,901 + CCNA_01217 0.33 -1.4
1,343,901 + CCNA_01217 0.33 +0.1
1,343,901 + CCNA_01217 0.33 -1.7
1,343,901 + CCNA_01217 0.33 -0.2
1,343,901 + CCNA_01217 0.33 -1.2
1,343,901 + CCNA_01217 0.33 -0.5
1,343,909 - CCNA_01217 0.33 -0.2
1,343,909 - CCNA_01217 0.33 -1.3
1,343,909 - CCNA_01217 0.33 +0.8
1,343,909 - CCNA_01217 0.33 -2.3
1,343,909 - CCNA_01217 0.33 -0.1
1,343,909 - CCNA_01217 0.33 -0.2
1,343,909 - CCNA_01217 0.33 -0.4
1,343,909 - CCNA_01217 0.33 -0.2
1,343,937 + CCNA_01217 0.36 -2.0
1,343,973 + CCNA_01217 0.39 -0.9
1,343,973 + CCNA_01217 0.39 +1.4
1,343,987 + CCNA_01217 0.40 -1.1
1,343,987 + CCNA_01217 0.40 +0.1
1,344,027 + CCNA_01217 0.44 -0.1
1,344,062 - CCNA_01217 0.47 -0.3
1,344,143 + CCNA_01217 0.54 +0.7
1,344,156 + CCNA_01217 0.55 -0.0
1,344,168 + CCNA_01217 0.56 -0.7
1,344,168 + CCNA_01217 0.56 -0.6
1,344,168 + CCNA_01217 0.56 +0.3
1,344,173 + CCNA_01217 0.57 +0.4
1,344,178 + CCNA_01217 0.57 -0.1
1,344,178 + CCNA_01217 0.57 +0.3
1,344,207 + CCNA_01217 0.60 -1.7
1,344,229 - CCNA_01217 0.62 -1.9
1,344,231 + CCNA_01217 0.62 -0.1
1,344,241 + CCNA_01217 0.63 -0.6
1,344,361 + CCNA_01217 0.73 -0.5
1,344,397 + CCNA_01217 0.77 -2.1
1,344,425 + CCNA_01217 0.79 +0.1
1,344,488 + CCNA_01217 0.85 +0.2
1,344,540 + CCNA_01217 0.89 -1.4
1,344,542 + CCNA_01217 0.90 -0.3
1,344,573 + -0.8
1,344,573 + -1.9
1,344,573 + -0.6
1,344,581 - -0.8
1,344,636 + -0.6
1,344,664 + +0.6
1,344,664 + +1.1
1,344,672 - -0.8
1,344,672 - -0.1
1,344,691 - CCNA_01218 0.11 -1.8
1,344,750 - CCNA_01218 0.17 -1.1
1,344,800 + CCNA_01218 0.22 +1.8
1,344,800 + CCNA_01218 0.22 -1.2
1,344,800 + CCNA_01218 0.22 +1.6
1,344,800 + CCNA_01218 0.22 +0.5
1,344,808 - CCNA_01218 0.23 -2.0
1,344,915 + CCNA_01218 0.34 -0.5
1,345,056 - CCNA_01218 0.48 -1.9
1,345,101 + CCNA_01218 0.53 -0.6
1,345,109 - CCNA_01218 0.53 -1.1
1,345,151 + CCNA_01218 0.58 +0.8
1,345,216 + CCNA_01218 0.64 -0.6
1,345,243 - CCNA_01218 0.67 -0.6
1,345,255 + CCNA_01218 0.68 -0.2
1,345,258 - CCNA_01218 0.68 -0.9
1,345,348 - CCNA_01218 0.78 -1.1
1,345,375 - CCNA_01218 0.80 -0.7
1,345,381 + CCNA_01218 0.81 -0.4
1,345,389 - CCNA_01218 0.82 -1.5
1,345,446 - CCNA_01218 0.87 -0.7
1,345,518 - -0.7
1,345,540 + -1.0
1,345,541 + +0.4
1,345,587 + -0.4
1,345,610 - -1.4
1,345,869 + CCNA_01219 0.34 -0.1
1,345,924 + CCNA_01219 0.40 +0.6
1,346,190 - CCNA_01219 0.71 -0.6
1,346,223 + CCNA_01219 0.74 -1.0
1,346,223 + CCNA_01219 0.74 -2.0
1,346,260 + CCNA_01219 0.79 +0.2
1,346,280 + CCNA_01219 0.81 +1.4
1,346,350 - CCNA_01219 0.89 -0.1
1,346,412 + +0.2
1,346,418 + +1.9
1,346,418 + +0.8
1,346,418 + +0.6
1,346,418 + +0.9
1,346,418 + +0.2
1,346,426 - +0.4
1,346,426 - -1.5
1,346,473 + -0.2
1,346,515 + -0.9
1,346,530 + -0.2
1,346,550 + -0.6
1,346,558 - +2.1

Or see this region's nucleotide sequence